Carlos Lopez
72b59deeaf
Completing tests
2020-05-26 10:21:36 -06:00
Dan Funk
a14168362a
Merge branch 'feature/support_ui_dashboard' into dev
2020-05-25 21:31:16 -04:00
Carlos Lopez
727274ae33
Using full approval payload to update record
2020-05-25 15:40:24 -06:00
Dan Funk
6cd4ef64d1
Fixing add_study api endpoint, so you can actually add a new "Study" with just some basic information.
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Using the LDAP service for checking user details in development mode - even if you are using the back door.
Added a new Flask fucntion load-example-rrt-data that loads the rrt workflow, and not the CRC wrokflows.
Modified the "load-example-data" in the tests to use some test data, rather than loading up all the workflows[
in CRC each time, with a parameter to load crc data if that is required - which is enabled for just a handful of tests.
(Tests run in 1/4 the time now)
2020-05-25 12:29:05 -04:00
Carlos Lopez
e9bd19b112
Fixing broken test
2020-05-24 01:22:14 -06:00
Carlos Lopez
49eb4b3f98
Making working endpoints for approvals
2020-05-23 23:53:48 -06:00
Aaron Louie
4eaee57076
Apparently, APPLICATION_ROOT does something.
2020-05-24 00:05:13 -04:00
Aaron Louie
68084a84cf
Adds base href environment variable. Sets base path for API and all routes from BASE_HREF environment variable.
2020-05-23 22:07:22 -04:00
Dan Funk
d5c91e575f
stuff that might be broken.
2020-05-23 15:21:30 -04:00
Aaron Louie
6c14248ef9
Adds 'v1.0/' to login route
2020-05-23 14:49:02 -04:00
Dan Funk
49c322177b
Merge pull request #76 from sartography/feature/rrp-endpoints
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Feature/rrp endpoints
2020-05-22 19:38:26 -04:00
Dan Funk
148e86bb42
Building out the boilerplate code to make pushing forward on this a little friendlier.
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There is an approval api file, and approval model file and an approval test file.
2020-05-22 18:25:00 -04:00
Dan Funk
571c1d7d24
Merge branch 'feature/rrp-endpoints' into feature/disable_protocol_builder
2020-05-22 16:18:33 -04:00
Dan Funk
1017bb1897
On the tools/render_docx api, allow sending the json data in the body, rather than as a ludicrous long get parameter. Silly Dan.
2020-05-22 15:30:22 -04:00
Dan Funk
503c1c8f18
Allow disabling the Protocol Builder
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PB_ENABLED can be set to false in the configuration (either in a file called instance/config.py, or as an environment variable)
Added a check in the base_test, to assure that we are always running tests with the test configuration, and bail out otherwise. Setting TESTING=true as an environment variable will get this, but so well the correct ordering of imports. Just be dead certain the first file every test file imports is base_test.py.
Aaron was right, and we call the Protocol Builder in all kinds of awful places. But we don't do this now. So Carlos, you should have the ability to reuse a lot of the logic in the study_service now.
I dropped the poorly named "study-update" endpoint completely. We weren't using it. POST and PUT to Study still work just fine for doing exactly that.
All the tests now run and pass with the Protocol builder disabled. Tests that specifically check PB behavior turn it back on for the test, or mock it out.
2020-05-22 14:37:49 -04:00
Carlos Lopez
a0c884499e
Merge branch 'feature/rrp-endpoints' of github.com:sartography/cr-connect-workflow into feature/rrp-endpoints
2020-05-22 09:46:25 -06:00
Carlos Lopez
1ed7930aab
Endpoint for studies with files
2020-05-22 09:46:03 -06:00
Dan Funk
b490005af7
dropping the remaining config stuff for flask_sso.
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updaing the user 'sso' endpoint to provide additional information for debugging.
Pulling information from ldap to stay super consistent on where we get our information.
2020-05-22 09:50:18 -04:00
Dan Funk
4627318818
Dropping flask_sso library in favor of reading from the headers directly. Updating login to read from ldap once it has the user_id. Adding more information to the sso endpoint.
2020-05-22 07:55:58 -04:00
Dan Funk
0265db7146
adding an /sso endpoint for testing.
2020-05-21 16:02:45 -04:00
Dan Funk
4628834106
just a few more logging details.
2020-05-21 12:11:35 -04:00
Dan Funk
951710d762
ldap lookup.
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Refactored calls into a new lookup_service to keep things tidy.
New keys for all enum/auto-complete fields:
PROP_OPTIONS_FILE = "spreadsheet.name"
PROP_OPTIONS_VALUE_COLUMN = "spreadsheet.value.column"
PROP_OPTIONS_LABEL_COL = "spreadsheet.label.column"
PROP_LDAP_LOOKUP = "ldap.lookup"
FIELD_TYPE_AUTO_COMPLETE = "autocomplete"
2020-05-19 16:11:43 -04:00
Dan Funk
fc080ce7a8
Don't reset the token to something that already has a token. Terrible things happen and we hit a recursion.
2020-05-17 13:29:36 -04:00
Dan Funk
43bf8f5337
Fixing a bug with navigation where elements went missing past exclusive gateways on subsequent forks.
2020-05-16 15:33:06 -04:00
Dan Funk
7d3f139633
Merge branch 'feature/navigation' of github.com:sartography/cr-connect-workflow into feature/navigation
2020-05-15 16:39:25 -04:00
Dan Funk
de435bd961
the heck with camel case, what the heck TypeScript? Get a grip. This is a python API.
2020-05-15 16:38:37 -04:00
Aaron Louie
0f1fbd0249
Merge branch 'dev' into feature/navigation
2020-05-15 16:10:40 -04:00
Dan Funk
53255ef35e
massive overhaul of the Workflow API endpoint.
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No Previous Task, No Last Task, No Task List. Just the current task, and the Navigation.
Use the token endpoint to set the current task, even if it is a "READY" task in the api.
Previous Task can be set by identifying the prior task in the Navigation (I'm hoping)
Prefering camel case to snake case on all new apis. Maybe clean the rest up later.
2020-05-15 15:54:53 -04:00
Dan Funk
b63ee8159e
We now only return the ready user tasks, not all tasks, and even then the ready user tasks don't come back with the forms and details, just the bare minimum. Speeds things up considerably, and most of this information wasn't used anyway.
2020-05-14 17:13:47 -04:00
Dan Funk
f2c9fd5fc4
adding a default url. And some debugging information to see if we hit he endpoint in the logs.
2020-05-14 15:07:05 -04:00
Dan Funk
55a1850e7c
adding a navigation component to the Workflow Model.
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running all extension/properties through the Jinja template processor so you can have custom display names using data, very helpful for building multi-instance displays.
Properties was returned as an array of key/value pairs, which is just mean. Switched this to a dictionary.
2020-05-14 13:43:23 -04:00
Dan Funk
e723992fde
Found a number of bugs with the parallel multi-instance - pulling in some recent changes from Spiffworkflow to open things up a bit more to allow functional jumping between tasks.
2020-05-12 12:23:43 -04:00
Aaron Louie
9afcd753c4
No longer requires task_id
2020-05-06 14:27:28 -04:00
Dan Funk
1571986c0e
I had to give up and live with the idea that we can only render documentation on the current task, not on the previous or next tasks. I think this is ok. If you want to view a task, you need to make it the active task to assure all the parts and pieces are in place.
2020-05-06 13:01:38 -04:00
Dan Funk
2699f5c65c
Refactor the stats models, and assure they are very correct across all tests with the workflow api.
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I noticed we were saving the workflow every time we loaded it up, rather than only when we were making changes to it. Refactored this to be a little more careful.
Centralized the saving of the workflow into one location in the processor, so we can make sure we update all the details about that workflow every time we save.
The workflow service has a method that will log any task action taken in a consistent way.
The stats models were removed from the API completely. Will wait for a use case for dealing with this later.
2020-05-04 10:57:09 -04:00
Dan Funk
1f5002680a
Initial work on a "Previous" task.
2020-05-01 12:11:39 -04:00
Dan Funk
bec59a71d7
Deleteing stuff is a damn mess, but this is a little cleaner.
2020-04-29 16:07:39 -04:00
Dan Funk
13333fb306
Adding an API endpoint that allows setting the token on the workflow to a specific task.
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Added error checking such that attempting to submit data for a task that is not in the "READY" state throws an error message.
For some reason I'm getting lots of errors in the tests as they try to hit API endpoints they were not hitting before, so adding a number of mocks to some of the study service tests.
2020-04-28 17:25:53 -04:00
Dan Funk
12eb039bc9
Server isn't erroring out, but can't find the lookup table id in the database, so trying to use the in-memory model instead, to give things time to get to the database. Really unsure what is happening here. Hard to see in the database.
2020-04-24 07:01:32 -04:00
Dan Funk
3aeb7ad116
Server isn't erroring out, but can't find the lookup table id in the database, so trying to use the in-memory model instead, to give things time to get to the database. Really unsure what is happening here. Hard to see in the database.
2020-04-23 14:58:17 -04:00
Dan Funk
b5b46b7c2c
better overall search results for type ahead. Still dealing with stop words failing.
2020-04-23 12:05:08 -04:00
Dan Funk
65b29e1a9d
Don't just bomb out as soon as someone types an empty string.
2020-04-23 09:44:11 -04:00
Dan Funk
7b085c9c9d
Adding an API Endpoint that will return a list of LookupValues that match a given query - can be used to populate an auto-complete table.
2020-04-22 19:40:40 -04:00
Dan Funk
fd0adb1d43
Updated the study status to use a different enumeration. Migration correctly handles modifying the enum.
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INCOMPLETE = 'Incomplete in Protocol Builder',
ACTIVE = 'Active / Ready to roll',
HOLD = 'On Hold',
OPEN = 'Open - this study is in progress',
ABANDONED = 'Abandoned, it got deleted in Protocol Builder'
2020-04-21 17:13:30 -04:00
Dan Funk
c8b817e98a
Be careful not to clean out all the data when a form is submitted, just merge the data in as it comes.
2020-04-17 13:51:48 -04:00
Dan Funk
dc2895cb05
Allow configurators to upload xls files into a workflow for defining enumrations of values for dropdown lists in forms. Fixing lots of tests.
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Found a problem where the documentation for elements was being processed BEFORE data was loaded from a script. There still may be some issues here.
Ran into an issue with circular dependencies - handling it with a new workflow_service, and pulling computational logic out of the api_models - it was the right thing to do.
2020-04-15 11:13:32 -04:00
Dan Funk
316b9e6e8d
Fixing a stupid mistake - must have typed a ' mark during commit.
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Script should inherit from object.
Updating the ids so I could more easily test and assure things were working correctly.
2020-04-08 13:39:42 -04:00
Dan Funk
c79415a794
throw a sensible error when study is not found on get_study (don't 500)
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some ugly fixes in the file_service for improving panda output from spreadsheet processing that I need to revist.
now that the spiff-workflow handles multi-instance, we can't have random multi-instance tasks around.
Improved tests around study deletion.
2020-04-08 13:28:43 -04:00
Aaron Louie
519a034d87
Updates last_updated when file data is saved. Returns last_updated as lastModified in response header for file data endpoint.
2020-04-08 12:58:55 -04:00
Dan Funk
534e8493a4
Deleting was broken because statistics were causing an integrity constraint.
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Updating IDS bpmn to the latest for testing.
Adding a TODO
2020-04-02 12:58:52 -04:00
Dan Funk
34b6ec92bf
updating the API
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Removing the call for study/workflows - as workflow information is returned with the study by default.
Fixing a bug in the workflow spec model schema.
2020-03-30 10:12:10 -04:00
Dan Funk
4a916c1ee3
Created a "StudyService" and moved all complex logic around study manipulation out of the study api, and this service, as things were getting complicated. The Workflow Processor no longer creates the WorkflowModel, the study object handles that, and only passes the model into the workflow processor when it is ready to start the workflow.
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Created a Study object (seperate from the StudyModel) that can cronstructed on request, and contains a different data structure than we store in the DB. This allows us to return underlying Categories and Workflows in a clean way.
Added a new status to workflows called "not_started", meaning we have not yet instantiated a processor or created a BPMN, they have no version yet and no stored data, just the possiblity of being started.
The Top Level Workflow or "Master" workflow is now a part of the sample data, and loaded at all times.
Removed the ability to "add a workflow to a study" and "remove a workflow from a study", a study contains all possible workflows by definition.
Example data no longer creates users or studies, it just creates the specs.
2020-03-30 08:00:16 -04:00
Dan Funk
57f1fa670e
fixing a stupid mistake.
2020-03-27 14:55:53 -04:00
Dan Funk
907e1cbbb3
minor fixes that were breaking when connecting to the front end.
2020-03-27 14:27:50 -04:00
Dan Funk
b61a35f956
Merge remote-tracking branch 'origin/master' into feature/status_refactor
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Fixing adding a study so all workflows are again added, will add status on those workflows based on output from the master bpmn diagram, which is coming shortly.
2020-03-27 11:55:36 -04:00
Dan Funk
c7d2c28178
Vastly more informative ApiError model that provides details on the underlying task where the error occured.
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Added a validate_workflow_specification endpoint that allows you to check if the workflow will execute from beginning to end using random data.
Minor fixes to existing bpmns to allow them to pass.
All scripts must include a "do_task_validate_only" that restricts external calls and database modifications, but performs as much logic as possible.
2020-03-27 08:29:31 -04:00
Dan Funk
e2c408b70d
Removed all self-referential calls in the study_api. One api endpoint should never call another api endpoint. Moved the logic for updating a study to the study Model, rather than checking and setting dictionary values which will become very hard to maintain.
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The protocol builder service now returns real models, not dictionaries, forcing proper validation and fail-fast behavior.
Changed the name of the "status" spec, to "top_level_workflow" and removing any connection a workflow or study has with this specification. It is only unused to determine status in real time, and is not reused or tracked.
Modified the required documents script to return a dictionary and not an array, making it easier to speak to specific values in the BPMN and DMN.
Working on new ways to test the top_level_workflow in the context of updates, this is still a work in progress.
Making use of several modifications to the Spiff library that enables more complex expressions in DMN models. This is evident in the new DMN models for the top_level_workflow
2020-03-26 12:51:53 -04:00
Dan Funk
f4342fc785
It became impossible to use the Swagger ui when we started adding authentication to all of the calls. I discovered Connexion and Swagger have a default way of handing JTW authentication and this cleans up our code quite a bit, moves the securing of endpoints into the API Definition, which is quite nice, and removes a whole library dependency (I never get to do that!) I added a SWAGGER_AUTH_KEY that can be used in non-production environments to allow users to quickly authenticate from the Swagger ui. I also removed all api calls to simple little happy api services, because that is just mean and pointless.
2020-03-24 14:15:21 -04:00
Dan Funk
0cd584880f
Fixing a bug where the workflow specification can not be deleted.
2020-03-23 12:48:31 -04:00
Dan Funk
967ac65d0e
Just raise the ApiError, no need to marshal it.
2020-03-23 12:22:26 -04:00
Dan Funk
b35427523d
Merge remote-tracking branch 'origin/master' into feature/reference_files
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# Conflicts:
# crc/models/file.py
# crc/services/file_service.py
# tests/data/reference/irb_documents.xlsx
# tests/test_files_api.py
2020-03-20 11:07:55 -04:00
Dan Funk
6e3b6c2635
Assure that files uploaded through web forms and files generated from templates can be cross-referenced to known document requirements from the protocol builder. Configurators can control this by managing an XLS Spreadsheet called "irb_documents.xslx".
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Required Documents is becoming complicated, so making this it's own script task, removing it from study_info.py
The file_service is now very aware of this irb_documents file, so it will always need to exist. We seed this file
during setup, but it can be overwritten by the configurator.
2020-03-19 17:14:20 -04:00
Aaron Louie
ac7c7b42c4
Revert "Merge remote-tracking branch 'origin/feature/reference_files' into feature/workflow_spec_categories"
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This reverts commit 9a26fc8e80
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2020-03-18 17:05:13 -04:00
Aaron Louie
9a26fc8e80
Merge remote-tracking branch 'origin/feature/reference_files' into feature/workflow_spec_categories
2020-03-18 16:58:57 -04:00
Aaron Louie
f0678b43d4
Minor fixes
2020-03-18 16:58:50 -04:00
Dan Funk
02be8ede75
Merge remote-tracking branch 'origin/master' into feature/reference_files
2020-03-18 15:16:34 -04:00
Aaron Louie
532d6b5dd6
Adds CRUD endpoints for workflow spec categories
2020-03-16 16:30:56 -04:00
Aaron Louie
4db456dcea
Adds workflow spec category methods
2020-03-16 16:12:39 -04:00
Aaron Louie
f9dbbefe89
Adds status spec to study when workflow is added.
2020-03-16 08:05:30 -04:00
Aaron Louie
bdd07685c6
Adds status spec when adding a study, and adds/removes workflows from study based on output data from status spec.
2020-03-15 15:54:13 -04:00
Dan Funk
779674ab60
Add the ability to upload and request general reference files by name. These will be used across workflows and will frequently contain lookup tables that can be referenced by various script tasks.
2020-03-13 15:03:57 -04:00
Aaron Louie
f177e33ad6
Tiny tweak
2020-03-11 15:31:23 -04:00
Aaron Louie
3262833102
Requires login
2020-03-11 15:27:22 -04:00
Aaron Louie
e977ee9e0d
Updates task counts when getting workflow
2020-03-11 15:16:42 -04:00
Aaron Louie
bbfe9291e0
Adds endpoint to get workflow stats. Adds a test for the endpoint.
2020-03-11 14:28:53 -04:00
Aaron Louie
be17c2159c
Adds workflow stats and task events models and schemas. Updates workflow stats and logs task completion when task data is updated.
2020-03-10 21:29:57 -04:00
Aaron Louie
f1b6718068
Adds task counts
2020-03-10 15:46:14 -04:00
Dan Funk
e91d7aff2f
Fixes #11 : adding a delete endpoint for studies. It won't delete studies that have workflows, you have to delete those first)
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Removing the "default" error response from the api.yml, it was all noise.
2020-03-09 15:12:40 -04:00
Aaron Louie
acad0023d2
Fixes a bug in get_study_workflows and adds a test covering it
2020-03-06 10:52:41 -05:00
Dan Funk
9fcd6f38f4
Merge remote-tracking branch 'origin/master' into feature/pb_services
2020-03-05 17:13:41 -05:00
Dan Funk
906bacff6a
Expose a flag on the workflow model in the api to shown if it is using the latest spec. Added a soft_reset and hard_reset onto the workflow endpoint that will allow you to cause a hard or soft reset.
2020-03-05 16:45:44 -05:00
Dan Funk
697d930eab
Modify the workflow processor to accept a workflow model - so it can take on more of the responsibilities of updating this model and managing versions.
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Changing the version information so that it includes the numbers of the files used to generate the serialized workflow.
2020-03-05 13:25:28 -05:00
Dan Funk
70611e2c1d
Adding the version of the specification used to create a workflow to the workflow api endpoint. Though the exact content of this version is likely to change.
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Split the API specific models out from the workflow models to help me keep this straight.
Added tests to help me understand the errors thrown the and resolution path when a workflow specification changes in the midst of a running workflow.
2020-03-05 11:18:20 -05:00
Dan Funk
c5cee4761e
Improve version handling of files. Consolidate more of this logic in FileService. Place the version on the actual data model, not the file model, so the file model remains the same, and we just version the data associated with it.
2020-03-04 13:40:25 -05:00
Aaron Louie
f258090a0b
Fixes broken unit test
2020-03-04 09:54:00 -05:00
Aaron Louie
8cbd6f892f
WIP: Mocks study details PB endpoint response
2020-03-03 20:56:46 -05:00
Aaron Louie
01720a8bbf
Replaces migration and fixes broken tests
2020-03-03 16:02:01 -05:00
Aaron Louie
93168482c2
Merge remote-tracking branch 'origin/master'
2020-03-03 15:46:24 -05:00
Aaron Louie
668de6c4dc
Edits Protocol Builder statuses
2020-03-03 15:46:20 -05:00
Dan Funk
94f828dfd6
Adding a simple endpoint that describes what scripts are currently available, along with a brief description.
2020-03-03 15:30:42 -05:00
Dan Funk
7194d7d374
Standardizing the script tasks that can be executed on the server, adding tons of error messages for when things go wrong. All scripts must exist in side of the crc/scripts directory.
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Adding a new script that script tasks can use to add in data about the study.
Moving all the test workflow specifications out of the main load.
fixing a pile of tests so they can find workflow specs that are now moved into the test directory.
2020-03-03 13:52:45 -05:00
Dan Funk
5e3fdaaa94
New set of "Tools" api endpoints, that provides a way to quickly render markdown or word documents by uploading json data and a template to populate.
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Improved Error messages / Error processing. You can now just throw an APIError anywhere, and it will be properly serialized and returned.
2020-02-29 17:22:38 -05:00
Aaron Louie
8611a23ad3
Renaming to snake case for consistency
2020-02-28 11:54:11 -05:00
Aaron Louie
4534b0c2df
Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.
2020-02-28 11:14:30 -05:00
Aaron Louie
0cc59d0974
Adds study inactive flag. Sets study to inactive if not found in Protocol Builder.
2020-02-27 11:17:58 -05:00
Aaron Louie
f3068e68db
Adds user to example data. Requires login before adding/updating a study.
2020-02-27 10:30:16 -05:00
Aaron Louie
27d7afb656
Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.
2020-02-27 09:54:46 -05:00
Aaron Louie
3ef4860391
Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
2020-02-26 18:06:51 -05:00
Aaron Louie
002207cbca
Adds redirect URL to login handler
2020-02-24 16:59:16 -05:00
Aaron Louie
443d38a9a1
Prevents duplication of study on update.
2020-02-21 11:24:51 -05:00
Aaron Louie
eb6354db6e
Moves sso_backdoor parameters to query string. Prevents duplication of user on update.
2020-02-21 11:24:39 -05:00
Aaron Louie
a6e0809183
Adds SSO attributes. Prevents uid duplication errors.
2020-02-20 17:23:10 -05:00
Aaron Louie
0cda7c66e5
Merge remote-tracking branch 'origin/master'
2020-02-20 15:43:34 -05:00
Aaron Louie
581434b453
Adds SSO header attributes
2020-02-20 15:43:29 -05:00
Dan Funk
2cc6010c8d
Protocol builder connections
2020-02-20 13:30:04 -05:00
Dan Funk
1a9b5b50e5
Merge branch 'master' of github.com:sartography/cr-connect-workflow
2020-02-18 16:39:11 -05:00
Dan Funk
a642593e3d
Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
2020-02-18 16:38:56 -05:00
Aaron Louie
b0b1a6e5e8
Saves form field key
2020-02-11 15:03:25 -05:00
Dan Funk
709bae76b2
Removing a rogue comma that was causing havoc. Also, don't fail if a mock already exists in the test database.
2020-02-11 11:11:21 -05:00
Dan Funk
1d24ebe382
Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
2020-02-10 16:19:23 -05:00
Aaron Louie
f142d02a30
Adds workflow_spec_id back in to WorkflowApi
2020-02-07 12:36:08 -05:00
Dan Funk
9bd93748be
Returning better cleaner information about workflow with the workflow endpoint. Removes the get_all_tasks and get_user_tasks endpoints as tasks are returned with the workflow. Workflow endpoint also includes the last task and next_task, which may or may not be user tasks. The task "type" returned is now the class name of the task_spec, rather than just the word "task".
2020-02-07 11:34:44 -05:00
Aaron Louie
5a6d589e6d
Adds form_field_key to API
2020-02-05 15:06:19 -05:00
Aaron Louie
e1e866a2b3
Gets docker-compose working.
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You'll need to add a .env file to the same directory as the docker-compose.yml file that sets the values for DB_USER and DB_PASS.
2020-02-04 21:42:09 -05:00
Dan Funk
ec4df2b3fa
Cleaning up the tests and making it easier to test workflows without adding them to the example data structure.
2020-02-04 16:49:28 -05:00
Dan Funk
b1a81957ef
Merge branch 'feature/update-task-data' of github.com:sartography/cr-connect-workflow into feature/update-task-data
2020-02-04 15:45:05 -05:00
Dan Funk
9e6fbfee79
Followup on Postgres - had some failing tests that needed cleaning up now that we are using a real database.
2020-02-04 15:44:06 -05:00
Aaron Louie
3ee0426ba9
Adds workflow_id to file endpoints.
2020-02-04 14:26:53 -05:00
Aaron Louie
098ecb3e87
Wipes out old migrations, since changing foreign key constraints in SQLite requires a full database reset anyways.
2020-02-04 09:57:02 -05:00
Aaron Louie
0368657549
Adds ability to get FileModel records by study and task
2020-02-03 21:56:18 -05:00
Dan Funk
8fbbed4feb
You must all "do engine steps" when completing a task so that it will kick off any automatic tasks/decisions/etc... this will update remaining tasks. Added some tests for parallel, since I wrote them trying to debug this.
2020-02-03 15:15:36 -05:00
Aaron Louie
e4b2a7a641
Adds endpoint to retrieve all user tasks for a workflow, regardless of state
2020-01-31 12:40:08 -05:00
Aaron Louie
a0e60ddd77
Renames endpoint methods for clarity. Adds endpoint for just updating file info.
2020-01-31 10:39:19 -05:00
Dan Funk
3fb831bae4
When you create a study, all possible workflows are then associated with that study.
2020-01-30 09:11:17 -05:00
Dan Funk
acca1523b7
adding an api call for getting a single workflow spec.
2020-01-28 10:14:06 -05:00
Aaron Louie
a3b6e4fc7f
Fixes import paths
2020-01-24 11:52:52 -05:00
Aaron Louie
50dfa561a9
Fixes import paths, which were screwing up stuff.
2020-01-24 09:29:50 -05:00
Aaron Louie
6faabea8a4
Deletes related files and workflows when a workflow spec is deleted.
2020-01-24 09:26:17 -05:00
Aaron Louie
6aa3d711ce
Adds endpoint to delete workflow spec
2020-01-23 16:05:09 -05:00
Aaron Louie
91e33a1768
Deletes associated file_data records when deleting a file.
2020-01-23 12:17:58 -05:00
Aaron Louie
6158243053
Fixes modify workflow method
2020-01-21 15:24:17 -05:00
Dan Funk
900819e647
fixing failed run
2020-01-14 15:39:54 -05:00
Aaron Louie
054bd88760
Fixes path to api methods
2020-01-14 14:55:10 -05:00
Aaron Louie
790b0dfc3a
Adds endpoint for modifying existing workflow spec
2020-01-14 14:10:53 -05:00
Aaron Louie
fe15799ee1
Adds type hinting to db and session to fix Pycharm autocomplete. Replaces db.session with session.
2020-01-14 11:45:12 -05:00
Dan Funk
6361e94af5
Allow submitting data and progressing to the next task in a workflow.
2020-01-14 11:02:44 -05:00
Aaron Louie
75881bf1d3
Adds endpoint for adding a workflow specification
2020-01-13 21:43:09 -05:00
Dan Funk
a3d7ba8114
WIP
2020-01-07 13:23:46 -05:00
Aaron Louie
872f3fca1b
Returns workflow spec id with Workflow schema
2020-01-06 09:18:13 -05:00
Aaron Louie
e75da611ca
Adds endpoints for creating and updating a Study.
2020-01-03 11:44:24 -05:00
Dan Funk
c4cbaeb64e
Refactor models into seperate directories
2019-12-31 16:32:47 -05:00
Dan Funk
9a195bedad
Fixing some caching issues and places where the updates were not being processed completed. And updates to the docker file.
2019-12-31 11:31:30 -05:00
Dan Funk
fb465531ca
Add the ability to delete a workflow.
2019-12-30 13:15:39 -05:00
Dan Funk
91a91e9677
Read workflow configuration from the database, and not from a file.
...
And dropping the API call in the Fact Service so we aren't hitting external apis for the time being.
2019-12-30 11:07:26 -05:00
Dan Funk
0b71833946
Adding file management. Files are stored in the database along with basic meta data.
2019-12-27 13:50:03 -05:00