620b9a5188
Fixing a regression. It's critical that Spiffworkflow's box implement deepcopy, as this is used by Jinga prior to generating a word document.
2021-05-05 21:36:57 -04:00
5a79b80f32
fixes #322 , do not error out deleting files that have assocaited data stores, just remove the data store.
2021-05-05 20:21:33 -04:00
7831bef050
Don't fail the sync completely when a remote file does not exist.
2021-05-05 15:59:00 -04:00
8f28970f92
Resolving an alembic conflict.
...
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
...
Irb info script #307
2021-05-04 11:40:52 -04:00
50cb078390
Merge pull request #303 from sartography/feature/performance-refactor
...
Performance Refactor
2021-05-04 11:31:10 -04:00
34759a2f3d
Merge branch 'dev' into feature/performance-refactor
2021-05-04 11:30:13 -04:00
4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get
...
Add default capability to file_data_get script
2021-05-04 11:28:40 -04:00
0747e2141e
Merge pull request #301 from sartography/310-task-event-timezone
...
310 task event timezone
2021-05-04 11:21:49 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
81467d6a8d
Merge pull request #299 from sartography/297-filename-in-documents
...
Add filename to files listing.
2021-05-04 11:19:59 -04:00
d68f319cf7
Merge pull request #298 from sartography/316-Shield-Test-Error
...
Emulate checks on keyword arguments and then return. Validate only sh…
2021-05-04 11:18:36 -04:00
77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
...
Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
7689281d68
Fixed typo. Response should be list, not dict.
2021-05-03 14:52:29 -04:00
576f3a661d
Removed print statement used while debugging.
2021-05-03 14:52:01 -04:00
c8446bfafd
Mock the Protocol Builder response in my test
2021-05-03 14:51:27 -04:00
804926dbac
Fixed problem where WorkflowService.make_test_workflow did not add a study to the workflow_model
2021-05-01 15:55:20 -04:00
9465b6408d
Test and workflow for new `get_irb_info` script
2021-05-01 15:53:43 -04:00
060ee5076d
New script to get IRB Info for a study
2021-05-01 15:52:41 -04:00
1bcf4ea02e
Test and mock data for new `get_irb_info` service in ProtocolBuilderService
2021-05-01 15:23:07 -04:00
22b3230243
Added service `get_irb_info` to `crc.services.protocol_builder.ProtocolBuilderService`
...
Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
2021-05-01 15:20:47 -04:00
a719cf4bf9
When retrieving the study, only update the status of underlying workflows if specifically requested.
...
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
7608a889fb
Add default capability to file_data_get
...
script
2021-04-30 10:11:50 -04:00
eb153c3ffc
Fixed column definition for standalone
2021-04-29 14:29:43 -04:00
24c818bf31
Added study_id to workflow_api
2021-04-29 14:29:21 -04:00
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
cc77a9182c
Add filename to files listing.
...
Fixes #297
2021-04-28 10:37:14 -04:00
dc6f1cc80d
Emulate checks on keyword arguments and then return. Validate only should have no side effects so the previous behavior was a bug.
2021-04-28 10:03:52 -04:00
c029dad688
Convert some datetime columns to include timezone
2021-04-28 10:00:22 -04:00
71a63c049d
Merge remote-tracking branch 'origin/dev' into dev
2021-04-27 12:16:36 -04:00
248ca6a33a
Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees)
...
todo: Create a ticket to assure we don't get in an infinite loading loop.
2021-04-27 12:14:37 -04:00
799747d638
Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane.
2021-04-27 12:13:49 -04:00
4946f77f58
adding a missing migration
2021-04-26 15:11:17 -04:00
09d8c8bcba
added missing test for update_workflow_spec_category
2021-04-26 12:57:08 -04:00
21e95b106d
Merge pull request #295 from sartography/299-document-datastore
...
Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
0aa3e8f586
added missing test for add_workflow_spec_category
2021-04-26 12:41:50 -04:00
047c68b2b5
Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models
2021-04-26 12:31:22 -04:00
b73c2ff1cb
Added missing test for `get_workflow_from_workflow_spec`
2021-04-26 12:00:06 -04:00
1a44f50de6
Added `standalone` argument to fix failing test.
2021-04-26 11:21:35 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
40ee20ecca
Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
...
Fixes #299
2021-04-26 09:55:28 -04:00
d3d7eeb309
Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
...
Fixes #299
2021-04-26 09:41:14 -04:00
7cca559747
Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests.
2021-04-26 08:58:09 -04:00
c002ef1e76
Added test for new api endpoint to get all standalone workflow_specs.
...
Modified test_add_new_workflow_specification to include new standalone argument
2021-04-26 08:56:21 -04:00
54ab7bd2f6
Test and workflow for launching a standalone workflow
2021-04-26 08:53:25 -04:00
e836242f10
Added standalone argument when adding a workflow_spec
2021-04-26 08:52:12 -04:00
a17e1bfaca
When completing a form in a test, check whether workflow is standalone.
...
Do not set study_id when workflow is standalone.
*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
2021-04-26 08:50:46 -04:00
6c98e8a2f4
removed duplicate code
2021-04-26 08:47:03 -04:00
077b68c1e2
When creating a workflow for a study, set the user_id to None
2021-04-26 08:46:19 -04:00
f17a9dc0f4
Modified `get_users_assigned_to_task`.
...
If we are running a standalone workflow, only return the current user.
2021-04-26 08:45:08 -04:00
Dan
mike cullerton
Kelly McDonald
Mike Cullerton