Commit Graph

345 Commits

Author SHA1 Message Date
Dan 7831bef050 Don't fail the sync completely when a remote file does not exist. 2021-05-05 15:59:00 -04:00
Dan 8f28970f92 Resolving an alembic conflict.
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens.  This seems to be working locally.
2021-05-04 13:39:49 -04:00
Dan Funk 34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk 77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
Dan a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested.
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
Kelly McDonald 2b9cee6b89 Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC 2021-04-29 10:25:28 -04:00
Kelly McDonald 799747d638 Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane. 2021-04-27 12:13:49 -04:00
Dan Funk 21e95b106d
Merge pull request #295 from sartography/299-document-datastore
Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
Dan 047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
Mike Cullerton 39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204 2021-04-26 10:27:32 -04:00
Kelly McDonald d3d7eeb309 Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
Fixes #299
2021-04-26 09:41:14 -04:00
mike cullerton fa818bd751 Code for the 2 new api endpoints
Also modified `update_task` so that it no longer requires a study_id
2021-04-26 08:31:12 -04:00
Dan dd7c5fd1c1 Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files. 2021-04-23 16:16:19 -04:00
Dan cf051a7d4f Merge branch 'dev' into 277-Document-pane
# Conflicts:
#	crc/api/file.py
2021-04-21 14:09:44 -04:00
Dan ecff7d20d3 Adding a test for the new endpoint and cleaning up the API documenation 2021-04-21 14:00:19 -04:00
Kelly McDonald 19e94da6b6 Fix slight bug in expansion code,
a non-expanded node was causing all parent levels to not expand.
2021-04-20 11:11:11 -04:00
Kelly McDonald e2197ddab9 Changes to support the frontend data pane
fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
Dan Funk 277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142
Auto set primary bpmn #142
2021-04-16 13:36:02 -04:00
mike cullerton 2374400542 Automatically set the first workflow for a workflow_spec to primary 2021-04-15 12:39:12 -04:00
mike cullerton 3332b9c7c0 Added delete_files argument to the restart_workflow api method, and pass it along to WorkflowProcessor.reset 2021-04-15 11:23:20 -04:00
Kelly McDonald 949f3be403 give an endpoint to return all files associated with a study 2021-04-12 12:23:33 -04:00
Dan Funk 14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
Bug/243 complete all
2021-03-14 12:34:55 -04:00
Dan 6f80d816cd My privous efforts didn't take into account the fact that we use dot notation in field names.
I've re-worked the workflow form endpoint, so that it only accepts the data that should be in the form, and ignores any other values that come back from the front end.  It seems Formly has some bugs that were introducing confusing information, and I want everything to behave consistently.
I had to re-work some of the tests, which were relying on an ability to set data through a form post without having a corresponding form to do so.
2021-03-14 12:20:39 -04:00
Dan 15c64c862e Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
mike cullerton ef26238127 added CustomBPMNScriptEngine back in 2021-03-11 14:33:35 -05:00
Mike Cullerton e7c78c8d0e
Merge branch 'dev' into study-associated-email-207-223 2021-03-11 12:38:47 -05:00
mike cullerton 80f1fc276f Modify api.tools.send_email to accommodate the changes to the api endpoint in api.yml
We now accept subject, address, body (the email message), and possible data.
We now use email_service to send the message, and wrap it with the CR Connect html formatting.

**** We import DEFAULT_SENDER from config.default. Will this be a problem on testing and production? ****
2021-03-11 11:19:02 -05:00
Dan 576aebab19 Sometimes a workflow can be completely broken and unloadable. For instance, it starts off with a engine step / script task that will not execute. So the failure happens the second it is processed. When calling reset on a workflow, we should catch the failure, and reset the workflow, so we aren't trapped in an unrecoverable state.
To do so, I changed the WorkflowProcessor's reset method to be static, it will try to instantiate the current workflow and execute a cancel_notify event, but if that fails, it will continue and always return a new workflow processor using the latest spec.
2021-03-09 11:52:55 -05:00
Dan 291216e081 Fixing a bug that prevented proper evaluation of a enum field where the default value was null or empty. 2021-03-08 14:00:03 -05:00
Dan 9e758c57d3 Merge branch 'dev' into bug/225_enum_lookup_same_field_name 2021-03-02 14:15:58 -05:00
Dan Funk 572eb3457a
Merge pull request #252 from sartography/customer-error-messages-192
Customer error messages 192
2021-03-02 13:45:38 -05:00
Dan aac3d5c16e Bug #255, this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature. 2021-03-01 14:54:04 -05:00
mike cullerton 9d804c36d5 Merge branch 'dev' into customer-error-messages-192.
Needed some sql changes from dev
2021-03-01 10:29:10 -05:00
Kelly McDonald c795dd7aea Merge branch 'dev' into 206-extend-study-access 2021-02-24 12:16:35 -05:00
Kelly McDonald 3dbe39c6fe initial checkin of changes for branch 2021-02-24 12:05:06 -05:00
Dan Funk 349c3d657a
Merge branch 'dev' into 201-changes-to-in-progress 2021-02-22 18:17:59 -05:00
Dan Funk 53fa49e668
Merge pull request #243 from sartography/183-remove-study-approval-code
Remove Approvals per ticket 183
2021-02-22 18:12:02 -05:00
mike cullerton 4fc2929356 Put the preamble back in to the error message. 2021-02-19 15:57:01 -05:00
Kelly McDonald 4fa0f9720a Allow frontend to honor 'view as' and fix problem with tests 2021-02-18 11:25:17 -05:00
Kelly McDonald 6fbaecf9b2 Change selection to include task events that are for someone else, but are on a study I own. 2021-02-18 08:09:13 -05:00
Kelly McDonald 003bf2f9b9 Remove Approvals per ticket 183 2021-02-16 09:05:29 -05:00
mike cullerton 39eb5c5c21 This is a decent beginning framework for customer error messages.
It is not complete, but is in a state where we can start to interact with the front end.
Two tests are failing.
Committing so I can work on an error for Alex.
2021-02-12 14:18:42 -05:00
Dan c44e784eb2 Fixing a bug with the user model. 2021-02-12 09:48:41 -05:00
Nile Walker 7eeb491dfa User str decode Removed 2021-02-12 09:30:18 -05:00
mike cullerton 8a2a8b1443 Still not in working order. Committing to work on another ticket. 2021-02-10 12:28:59 -05:00
mike cullerton 3e32cdedc4 New error handler for non Api errors. Ticket 187 2021-02-09 16:35:57 -05:00
mike cullerton fa34bee18a First commit for cleaning up error messages for customers.
This is *not* in a working state.
Committing this so I can work on another ticket.
2021-02-04 11:23:05 -05:00
Dan Funk effd11f947
Merge pull request #231 from sartography/cancellations-137
Cancellations 137
2021-02-03 16:31:18 -05:00
Dan Funk 1eba20f420
Merge pull request #229 from sartography/workflow-spec-order-74
Workflow spec order 74
2021-02-03 16:18:34 -05:00