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cr-connect-workflow
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fixing failed run

This commit is contained in:
Dan Funk 2020-01-14 15:39:54 -05:00
parent 7ce48e8deb
commit 900819e647
2 changed files with 22 additions and 22 deletions
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42
crc/api.yml
View File

@ -10,7 +10,7 @@ paths:
# /v1.0/study
/study:
get:
operationId: api.study.all_studies
operationId: crc.api.study.all_studies
summary: Provides a list of studies related to the current user.
tags:
- Studies
@ -28,7 +28,7 @@ paths:
schema:
$ref: "#/components/schemas/Error"
post:
operationId: api.study.add_study
operationId: crc.api.study.add_study
summary: Creates a new study with the given parameters.
tags:
- Studies
@ -52,7 +52,7 @@ paths:
$ref: "#/components/schemas/Error"
/study/{study_id}:
get:
operationId: api.study.get_study
operationId: crc.api.study.get_study
summary: Provides a single study
tags:
- Studies
@ -78,7 +78,7 @@ paths:
schema:
$ref: "#/components/schemas/Error"
post:
operationId: api.study.update_study
operationId: crc.api.study.update_study
summary: Updates an existing study with the given parameters.
tags:
- Studies
@ -110,7 +110,7 @@ paths:
$ref: "#/components/schemas/Error"
/study-update/{study_id}:
post:
operationId: api.study.post_update_study_from_protocol_builder
operationId: crc.api.study.post_update_study_from_protocol_builder
summary: If the study is up-to-date with Protocol Builder, returns a 304 Not Modified. If out of date, return a 202 Accepted and study state changes to updating.
tags:
- Study Status
@ -135,7 +135,7 @@ paths:
$ref: "#/components/schemas/Error"
/study/{study_id}/workflows:
get:
operationId: api.study.get_study_workflows
operationId: crc.api.study.get_study_workflows
summary: Provides a list of workflows to be completed for the given study.
tags:
- Studies
@ -163,7 +163,7 @@ paths:
schema:
$ref: "#/components/schemas/Error"
post:
operationId: api.study.add_workflow_to_study
operationId: crc.api.study.add_workflow_to_study
summary: Starts a new workflow for the given study using the provided spec. This is atypical, and should be left to the protocol builder.
tags:
- Studies
@ -197,7 +197,7 @@ paths:
$ref: "#/components/schemas/Error"
/workflow-specification:
get:
operationId: api.workflow.all_specifications
operationId: crc.api.workflow.all_specifications
summary: Provides a list of workflows specifications that can be added to a study manually. Please note that Protocol Builder will handle this most of the time.
tags:
- Workflows and Tasks
@ -217,7 +217,7 @@ paths:
schema:
$ref: "#/components/schemas/Error"
post:
operationId: api.workflow.add_workflow_specification
operationId: crc.api.workflow.add_workflow_specification
summary: Creates a new workflow specification with the given parameters.
tags:
- Workflows and Tasks
@ -241,7 +241,7 @@ paths:
$ref: "#/components/schemas/Error"
/workflow-specification/{spec_id}:
put:
operationId: api.workflow.update_workflow_specification
operationId: crc.api.workflow.update_workflow_specification
summary: Modifies an existing workflow specification with the given parameters.
tags:
- Workflows and Tasks
@ -279,7 +279,7 @@ paths:
schema:
type: string
get:
operationId: api.file.get_files
operationId: crc.api.file.get_files
summary: Provides a list of files that match the given parameters (such as a spec id) IMPORTANT, only includes metadata, not the file content.
tags:
- Files
@ -299,7 +299,7 @@ paths:
schema:
$ref: "#/components/schemas/Error"
post:
operationId: api.file.add_file
operationId: crc.api.file.add_file
summary: Add a new file
tags:
- Files
@ -330,7 +330,7 @@ paths:
schema:
type: integer
get:
operationId: api.file.get_file_info
operationId: crc.api.file.get_file_info
summary: Returns metadata about a file.
tags:
- Files
@ -342,7 +342,7 @@ paths:
schema:
$ref: "#/components/schemas/File"
put:
operationId: api.file.update_file
operationId: crc.api.file.update_file
summary: Update a file
tags:
- Files
@ -365,7 +365,7 @@ paths:
schema:
$ref: "#/components/schemas/File"
delete:
operationId: api.file.delete_file
operationId: crc.api.file.delete_file
summary: Removes an existing file
tags:
- Files
@ -381,7 +381,7 @@ paths:
schema:
type: integer
get:
operationId: api.file.get_file
operationId: crc.api.file.get_file
summary: Returns only the file contents
tags:
- Files
@ -405,7 +405,7 @@ paths:
type: integer
format: int32
get:
operationId: api.workflow.get_workflow
operationId: crc.api.workflow.get_workflow
summary: Detailed information for a specific workflow instance
tags:
- Workflows and Tasks
@ -423,7 +423,7 @@ paths:
schema:
$ref: "#/components/schemas/Error"
delete:
operationId: api.workflow.delete
operationId: crc.api.workflow.delete
summary: Removes an existing workflow
tags:
- Workflows and Tasks
@ -432,7 +432,7 @@ paths:
description: The workflow was removed
/workflow/{workflow_id}/tasks:
get:
operationId: api.workflow.get_tasks
operationId: crc.api.workflow.get_tasks
summary: Return a list of all tasks for this workflow
tags:
- Workflows and Tasks
@ -477,7 +477,7 @@ paths:
type: string
format: uuid
get:
operationId: api.workflow.get_task
operationId: crc.api.workflow.get_task
summary: Get details of specific task in specific workflow instance
tags:
- Workflows and Tasks
@ -511,7 +511,7 @@ paths:
type: string
format: uuid
put:
operationId: api.workflow.update_task
operationId: crc.api.workflow.update_task
summary: Exclusively for User Tasks, submits form data as a flat set of key/values.
tags:
- Workflows and Tasks

2
crc/api/workflow.py
View File

@ -1,6 +1,6 @@
import uuid
from api.common import ApiError, ApiErrorSchema
from crc.api.common import ApiError, ApiErrorSchema
from crc import session
from crc.models.workflow import WorkflowModel, WorkflowModelSchema, WorkflowSpecModelSchema, WorkflowSpecModel, \
Task, TaskSchema