2610 Commits

Author SHA1 Message Date
dependabot[bot]
e96b480ee5
Bump numpy from 1.19.4 to 1.21.0 in /deploy
Bumps [numpy](https://github.com/numpy/numpy) from 1.19.4 to 1.21.0.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt)
- [Commits](https://github.com/numpy/numpy/compare/v1.19.4...v1.21.0)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-02-11 17:31:24 +00:00
Dan Funk
017b3df2f0
Merge pull request #453 from sartography/feature/spec_files_wthout_db
Feature/spec files wthout db
2022-02-11 12:30:26 -05:00
Dan
e9cf095810 Fixing a stupid mistake in the tests. 2022-02-11 11:54:46 -05:00
Dan
648383f2ea for some reason jenkins doesn't like the spec_category_reorder test, so just doing it a different way. 2022-02-11 11:37:25 -05:00
Dan
bf4f6909b9 Don't show the .git directory. 2022-02-11 11:06:26 -05:00
Dan
7a99859108 fixing some failing test 2022-02-11 11:00:42 -05:00
Dan
4f2602c2f8 Assure sync_file_root can be set from an environment variable. 2022-02-11 10:19:25 -05:00
Dan
1b993ea227 updating readme 2022-02-11 09:47:49 -05:00
Dan
3993297360 minor fixes to the study api to get things working locally when we pull down a database from testing. 2022-02-10 18:19:57 -05:00
Dan
1858cd314f Assure we can call get_spec and it can return the master spec correctly. 2022-02-10 18:04:32 -05:00
Dan
a047c63c32 Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db 2022-02-10 16:53:22 -05:00
Dan
1e4ec6f395 fixes to the workflow spec schema, so we can load null things without stuff blowing up. 2022-02-10 16:53:15 -05:00
alicia pritchett
b7893688ae tweak 2022-02-10 16:21:59 -05:00
Dan
edaf6e205e Not certain if this works, but this should help finding data maybe. 2022-02-10 16:10:35 -05:00
Dan
eb7760fa55 Adding the migration - very destructive, but required for running the app.
minor fixes - there is still some weird problems with study id and user id being null that I need to track down, but the issue is sporadic, and hard to track down.
2022-02-10 11:50:31 -05:00
Dan
3ebffeed33 Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db 2022-02-10 11:34:56 -05:00
Dan
4280fa6610 Assure the spec has the corect category id on it. 2022-02-10 11:34:50 -05:00
alicia pritchett
3ee95b3c39 gets master spec 2022-02-10 11:29:38 -05:00
Dan
9a9e90dc30 Assure the import test has reference files. 2022-02-10 10:49:15 -05:00
Dan
f73b29cda2 Removing all the old unused outdated specs in the static directory. 2022-02-10 10:47:05 -05:00
Dan
df3f67601c performance improvements. and last rements of load_example_data() 2022-02-09 23:29:39 -05:00
Dan
788e40a998 death to load_example_data() !!!!! 2022-02-09 22:13:02 -05:00
Dan
f12c4aba52 Refactor the workflow_spec_service so it doesn't cache anything, it always reads what it needs from the file system. 2022-02-09 21:06:55 -05:00
Dan
cf71f68ad9 all tests passing!!!!!!!!!!!!! 2022-02-09 15:30:07 -05:00
Dan
2cc20d4b9d really need to avoid any kind of caching in the WorkflowSpecService 2022-02-09 14:43:32 -05:00
mike cullerton
b2d2491b72 Now, we have a list of strings, so get the value directly 2022-02-09 13:59:31 -05:00
mike cullerton
77b1692e2f typo 2022-02-09 13:52:48 -05:00
mike cullerton
3b6f217443 specs, not workflows 2022-02-09 13:51:49 -05:00
alicia pritchett
c830c468b6 Merge remote-tracking branch 'origin/feature/spec_files_wthout_db' into feature/spec_files_wthout_db 2022-02-09 13:41:53 -05:00
alicia pritchett
b788bbf4f4 revert this back 2022-02-09 13:41:50 -05:00
Dan
89e02c6207 really need to avoid any kind of caching in the WorkflowSpecService 2022-02-09 13:37:57 -05:00
alicia pritchett
b5099cf5a2 Merge remote-tracking branch 'origin/feature/spec_files_wthout_db' into feature/spec_files_wthout_db 2022-02-09 13:09:49 -05:00
alicia pritchett
595b866f41 return empty list if you dont find standalones or libraries 2022-02-09 13:09:46 -05:00
mike cullerton
aaf20a4de7 specs, not workflows 2022-02-09 13:06:33 -05:00
Dan
7e7821a5e7 more test passing 2022-02-09 13:01:26 -05:00
Dan
db93f9be4e fixing the test_spec_files 2022-02-09 12:44:54 -05:00
Dan
02e496b0ef Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db 2022-02-09 12:36:21 -05:00
Dan
5773eb99f3 fixing study status. 2022-02-09 12:36:16 -05:00
mike cullerton
881ee78e68 Merge branch 'feature/spec_files_wthout_db' of https://github.com/sartography/cr-connect-workflow into feature/spec_files_wthout_db 2022-02-09 12:14:57 -05:00
mike cullerton
d46dfdec40 Fixed the bad order test 2022-02-09 12:14:37 -05:00
Dan
e9fd76ed99 lookup service tests passing, but I need to revist this. 2022-02-09 12:11:51 -05:00
Dan
de6d7eee84 nearly all study tests work. 2022-02-09 12:03:45 -05:00
Dan
f72b25d9be Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db 2022-02-09 11:37:58 -05:00
Dan
8e7c8c87c3 down to just 38 failed tests 2022-02-09 11:37:54 -05:00
alicia pritchett
5bd25b9f60 get all specs change 2022-02-09 11:34:17 -05:00
alicia pritchett
148796d311 fixes add_category 2022-02-09 11:24:41 -05:00
alicia pritchett
38d64b1ffd fixes a workflow model related test
yes i call a service from a service whoops
2022-02-09 11:07:09 -05:00
mike cullerton
1c033ce7f2 Merge branch 'feature/spec_files_wthout_db' of https://github.com/sartography/cr-connect-workflow into feature/spec_files_wthout_db 2022-02-09 10:55:19 -05:00
mike cullerton
9576089e84 Reorder categories 2022-02-09 10:55:02 -05:00
alicia pritchett
8c5f3a8cfb slight model change thing for categories 2022-02-09 10:27:46 -05:00