updating readme
This commit is contained in:
Dan
parent
3993297360
commit
1b993ea227
62
README.md
62
README.md
|
|
@ -95,9 +95,65 @@ and primary investigator to dhf8r - which is a user in the mock ldap service, an
|
|||
fire up the interface.
|
||||
|
||||
### Configuration
|
||||
1. `instance/config.py`: This will configure the application for your local instance, overriding the configuration
|
||||
in config/default
|
||||
|
||||
This covers both local configurations for development, and production settings.
|
||||
We will cover all the settings below, but perhaps the most important part of the configuration is setting
|
||||
the location of your workflow specifications. If you start up without setting a path, then it will
|
||||
use a few testing workflows as a default.
|
||||
|
||||
For CRConnect, there is a private repository that contains all the workflow specifications, so get this
|
||||
checked out, then in a file called /instance/config.py add the following setting:
|
||||
SYNC_FILE_ROOT = '/path/to/my/git/dir/crconnect-workflow-specs'
|
||||
|
||||
#### Local Configuration
|
||||
`instance/config.py`: This will configure the application for your local instance, overriding the configuration
|
||||
in config/default. Very handy for setting
|
||||
|
||||
#### Production Configuration
|
||||
We use environment variables with identical names to the variables in the default configuration file to configure the
|
||||
application for production deplyment in a docker container
|
||||
|
||||
#### Common Configuration Settings
|
||||
While these can be set in instance/config.py or as environment settings in docker, I'll present this as how you would
|
||||
define the Docker Container, as /config/default.py offers a good example of the former.
|
||||
```yaml
|
||||
cr-connect-backend-testing:
|
||||
container_name: cr-connect-backend-testing
|
||||
image: ghcr.io/sartography/cr-connect-workflow:master # We use GitHub's actions to publish images
|
||||
volumes:
|
||||
- /home/sartography/docker-volumes/testing:/var/lib/cr-connect/specs # where specs are located.
|
||||
ports:
|
||||
environment:
|
||||
- PRODUCTION=true # Should be set to true if you aren't running locally for development.
|
||||
- DEVELOPMENT=false # Should be the opposite of production.
|
||||
- PB_ENABLED=true # Generally true, we should connect to Protocol Builder
|
||||
- PREFERRED_URL_SCHEME=https # Generally you want to run on SSL, should be https
|
||||
- SERVER_NAME=testing.crconnect.uvadcos.io # The url used to access this app.
|
||||
- TOKEN_AUTH_SECRET_KEY=-0-0-0- TESTING SUPER SECURE -0-0-0- # Some random characters that seed our key gen.
|
||||
- APPLICATION_ROOT=/api # Appended to SERVER_NAME, is the full path to this service
|
||||
- ADMIN_UIDS=dhf8r,cah3us # A comma delimited list of people who can preform administrative tasks.
|
||||
- CORS_ALLOW_ORIGINS=testing.crconnect.uvadcos.io,shibidp.its.virginia.edu,sp.uvadcos.io # CORS stuff
|
||||
- FRONTEND=testing.crconnect.uvadcos.io # URL to reach the front end application.
|
||||
- BPMN=testing.crconnect.uvadcos.io/bpmn # URL to reach the configuration interface.
|
||||
- PB_BASE_URL=http://10.250.124.174:11022/pb/v2.0/ # URL for Protocol Builder
|
||||
- UPGRADE_DB=true # Will run all migrations on startup if set to true. Generally a good idea for production.
|
||||
- DB_USER=crc_user # Database user name
|
||||
- DB_NAME=crc_testing # Database passwprd
|
||||
- DB_HOST=10.250.124.186 # Domain/IP of database server.
|
||||
- DB_PORT=15432 # Port of database server.
|
||||
- DB_PASSWORD=XXXXX # Passwword for the database
|
||||
- MAIL_PASSWORD=XXXX # Mail Password
|
||||
- MAIL_USERNAME=XXXXX # Mail username
|
||||
- LDAP_URL=privopenldap.its.virginia.edu # URL for the LDAP Server
|
||||
- LDAP_PASS=XXXX # Password for the ldap server
|
||||
- LDAP_USER=cn=crcconnect,ou=Special Users,o=University of Virginia,c=US #LDAP settings for search, likely these.
|
||||
- SENTRY_ENVIRONMENT=testing.crconnect.uvadcos.io # Configuration for Sentry
|
||||
- GITHUB_TOKEN=XXXX # A token for GitHub so we can push and pull changes.
|
||||
- PORT0=11021 # The port on the server where this sytem should be avialable, could be 80, but we are behind a proxy.
|
||||
- SYNC_FILE_ROOT=/var/lib/cr-connect/specs # This should be the same as the volumes above, a location where the specs are checked out in git.
|
||||
```
|
||||
|
||||
|
||||
|
||||
|
||||
### Project Initialization
|
||||
1. Clone this repository.
|
||||
|
|
|
|||
|
|
@ -1,26 +0,0 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" id="Definitions_1v1rp1q" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.3">
|
||||
<bpmn:process id="empty_workflow" isExecutable="true">
|
||||
<bpmn:startEvent id="StartEvent_1">
|
||||
<bpmn:outgoing>SequenceFlow_0lvudp8</bpmn:outgoing>
|
||||
</bpmn:startEvent>
|
||||
<bpmn:sequenceFlow id="SequenceFlow_0lvudp8" sourceRef="StartEvent_1" targetRef="EndEvent_0q4qzl9" />
|
||||
<bpmn:endEvent id="EndEvent_0q4qzl9">
|
||||
<bpmn:incoming>SequenceFlow_0lvudp8</bpmn:incoming>
|
||||
</bpmn:endEvent>
|
||||
</bpmn:process>
|
||||
<bpmndi:BPMNDiagram id="BPMNDiagram_1">
|
||||
<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="empty_workflow">
|
||||
<bpmndi:BPMNEdge id="SequenceFlow_0lvudp8_di" bpmnElement="SequenceFlow_0lvudp8">
|
||||
<di:waypoint x="215" y="117" />
|
||||
<di:waypoint x="432" y="117" />
|
||||
</bpmndi:BPMNEdge>
|
||||
<bpmndi:BPMNShape id="_BPMNShape_StartEvent_2" bpmnElement="StartEvent_1">
|
||||
<dc:Bounds x="179" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
<bpmndi:BPMNShape id="EndEvent_0q4qzl9_di" bpmnElement="EndEvent_0q4qzl9">
|
||||
<dc:Bounds x="432" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
</bpmndi:BPMNPlane>
|
||||
</bpmndi:BPMNDiagram>
|
||||
</bpmn:definitions>
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
{
|
||||
"library": false,
|
||||
"standalone": false,
|
||||
"display_order": 2,
|
||||
"id": "workflow_one",
|
||||
"description": "Workflow One, is a workflow.",
|
||||
"is_master_spec": false,
|
||||
"libraries": [],
|
||||
"display_name": "Workflow One",
|
||||
"primary_file_name": "empty_workflow.bpmn",
|
||||
"primary_process_id": "empty_workflow"
|
||||
}
|
||||
|
|
@ -1,26 +0,0 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" id="Definitions_1v1rp1q" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.3">
|
||||
<bpmn:process id="empty_workflow" isExecutable="true">
|
||||
<bpmn:startEvent id="StartEvent_1">
|
||||
<bpmn:outgoing>SequenceFlow_0lvudp8</bpmn:outgoing>
|
||||
</bpmn:startEvent>
|
||||
<bpmn:sequenceFlow id="SequenceFlow_0lvudp8" sourceRef="StartEvent_1" targetRef="EndEvent_0q4qzl9" />
|
||||
<bpmn:endEvent id="EndEvent_0q4qzl9">
|
||||
<bpmn:incoming>SequenceFlow_0lvudp8</bpmn:incoming>
|
||||
</bpmn:endEvent>
|
||||
</bpmn:process>
|
||||
<bpmndi:BPMNDiagram id="BPMNDiagram_1">
|
||||
<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="empty_workflow">
|
||||
<bpmndi:BPMNEdge id="SequenceFlow_0lvudp8_di" bpmnElement="SequenceFlow_0lvudp8">
|
||||
<di:waypoint x="215" y="117" />
|
||||
<di:waypoint x="432" y="117" />
|
||||
</bpmndi:BPMNEdge>
|
||||
<bpmndi:BPMNShape id="_BPMNShape_StartEvent_2" bpmnElement="StartEvent_1">
|
||||
<dc:Bounds x="179" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
<bpmndi:BPMNShape id="EndEvent_0q4qzl9_di" bpmnElement="EndEvent_0q4qzl9">
|
||||
<dc:Bounds x="432" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
</bpmndi:BPMNPlane>
|
||||
</bpmndi:BPMNDiagram>
|
||||
</bpmn:definitions>
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
{
|
||||
"library": false,
|
||||
"standalone": false,
|
||||
"display_order": 3,
|
||||
"id": "workflow_three",
|
||||
"description": "Workflow Three, is a workflow.",
|
||||
"is_master_spec": false,
|
||||
"libraries": [],
|
||||
"display_name": "Workflow Three",
|
||||
"primary_file_name": "empty_workflow.bpmn",
|
||||
"primary_process_id": "empty_workflow"
|
||||
}
|
||||
|
|
@ -1,26 +0,0 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" id="Definitions_1v1rp1q" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.3">
|
||||
<bpmn:process id="empty_workflow" isExecutable="true">
|
||||
<bpmn:startEvent id="StartEvent_1">
|
||||
<bpmn:outgoing>SequenceFlow_0lvudp8</bpmn:outgoing>
|
||||
</bpmn:startEvent>
|
||||
<bpmn:sequenceFlow id="SequenceFlow_0lvudp8" sourceRef="StartEvent_1" targetRef="EndEvent_0q4qzl9" />
|
||||
<bpmn:endEvent id="EndEvent_0q4qzl9">
|
||||
<bpmn:incoming>SequenceFlow_0lvudp8</bpmn:incoming>
|
||||
</bpmn:endEvent>
|
||||
</bpmn:process>
|
||||
<bpmndi:BPMNDiagram id="BPMNDiagram_1">
|
||||
<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="empty_workflow">
|
||||
<bpmndi:BPMNEdge id="SequenceFlow_0lvudp8_di" bpmnElement="SequenceFlow_0lvudp8">
|
||||
<di:waypoint x="215" y="117" />
|
||||
<di:waypoint x="432" y="117" />
|
||||
</bpmndi:BPMNEdge>
|
||||
<bpmndi:BPMNShape id="_BPMNShape_StartEvent_2" bpmnElement="StartEvent_1">
|
||||
<dc:Bounds x="179" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
<bpmndi:BPMNShape id="EndEvent_0q4qzl9_di" bpmnElement="EndEvent_0q4qzl9">
|
||||
<dc:Bounds x="432" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
</bpmndi:BPMNPlane>
|
||||
</bpmndi:BPMNDiagram>
|
||||
</bpmn:definitions>
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
{
|
||||
"library": false,
|
||||
"standalone": false,
|
||||
"display_order": 3,
|
||||
"id": "workflow_two",
|
||||
"description": "Workflow Two, is a workflow.",
|
||||
"is_master_spec": false,
|
||||
"libraries": [],
|
||||
"display_name": "Workflow Two",
|
||||
"primary_file_name": "empty_workflow.bpmn",
|
||||
"primary_process_id": "empty_workflow"
|
||||
}
|
||||
|
|
@ -1,26 +0,0 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" id="Definitions_1v1rp1q" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.3">
|
||||
<bpmn:process id="empty_workflow_library" isExecutable="true">
|
||||
<bpmn:startEvent id="StartEvent_1">
|
||||
<bpmn:outgoing>SequenceFlow_0lvudp8</bpmn:outgoing>
|
||||
</bpmn:startEvent>
|
||||
<bpmn:sequenceFlow id="SequenceFlow_0lvudp8" sourceRef="StartEvent_1" targetRef="EndEvent_0q4qzl9" />
|
||||
<bpmn:endEvent id="EndEvent_0q4qzl9">
|
||||
<bpmn:incoming>SequenceFlow_0lvudp8</bpmn:incoming>
|
||||
</bpmn:endEvent>
|
||||
</bpmn:process>
|
||||
<bpmndi:BPMNDiagram id="BPMNDiagram_1">
|
||||
<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="empty_workflow">
|
||||
<bpmndi:BPMNEdge id="SequenceFlow_0lvudp8_di" bpmnElement="SequenceFlow_0lvudp8">
|
||||
<di:waypoint x="215" y="117" />
|
||||
<di:waypoint x="432" y="117" />
|
||||
</bpmndi:BPMNEdge>
|
||||
<bpmndi:BPMNShape id="_BPMNShape_StartEvent_2" bpmnElement="StartEvent_1">
|
||||
<dc:Bounds x="179" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
<bpmndi:BPMNShape id="EndEvent_0q4qzl9_di" bpmnElement="EndEvent_0q4qzl9">
|
||||
<dc:Bounds x="432" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
</bpmndi:BPMNPlane>
|
||||
</bpmndi:BPMNDiagram>
|
||||
</bpmn:definitions>
|
||||
|
|
@ -1,26 +0,0 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" id="Definitions_1v1rp1q" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.3">
|
||||
<bpmn:process id="empty_workflow" isExecutable="true">
|
||||
<bpmn:startEvent id="StartEvent_1">
|
||||
<bpmn:outgoing>SequenceFlow_0lvudp8</bpmn:outgoing>
|
||||
</bpmn:startEvent>
|
||||
<bpmn:sequenceFlow id="SequenceFlow_0lvudp8" sourceRef="StartEvent_1" targetRef="EndEvent_0q4qzl9" />
|
||||
<bpmn:endEvent id="EndEvent_0q4qzl9">
|
||||
<bpmn:incoming>SequenceFlow_0lvudp8</bpmn:incoming>
|
||||
</bpmn:endEvent>
|
||||
</bpmn:process>
|
||||
<bpmndi:BPMNDiagram id="BPMNDiagram_1">
|
||||
<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="empty_workflow">
|
||||
<bpmndi:BPMNEdge id="SequenceFlow_0lvudp8_di" bpmnElement="SequenceFlow_0lvudp8">
|
||||
<di:waypoint x="215" y="117" />
|
||||
<di:waypoint x="432" y="117" />
|
||||
</bpmndi:BPMNEdge>
|
||||
<bpmndi:BPMNShape id="_BPMNShape_StartEvent_2" bpmnElement="StartEvent_1">
|
||||
<dc:Bounds x="179" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
<bpmndi:BPMNShape id="EndEvent_0q4qzl9_di" bpmnElement="EndEvent_0q4qzl9">
|
||||
<dc:Bounds x="432" y="99" width="36" height="36" />
|
||||
</bpmndi:BPMNShape>
|
||||
</bpmndi:BPMNPlane>
|
||||
</bpmndi:BPMNDiagram>
|
||||
</bpmn:definitions>
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
{
|
||||
"library": false,
|
||||
"standalone": false,
|
||||
"is_master_spec": true,
|
||||
"display_name": "Top Level Workflow",
|
||||
"description": "Determines the status of other workflows in a study",
|
||||
"primary_file_name": "empty_workflow.bpmn",
|
||||
"primary_process_id": "empty_workflow",
|
||||
"libraries": [
|
||||
{ "id": "library_one" }
|
||||
]
|
||||
}
|
||||
|
|
@ -1,23 +0,0 @@
|
|||
{
|
||||
"libraries": [
|
||||
{
|
||||
"id": "library_one",
|
||||
"description": "The One Library",
|
||||
"primary_file_name": "empty_workflow_library.bpmn",
|
||||
"primary_process_id": "empty_workflow_library",
|
||||
"display_name": "The One Library"
|
||||
}
|
||||
],
|
||||
"categories": [
|
||||
{
|
||||
"admin": false,
|
||||
"display_order": 0,
|
||||
"display_name": "Category Number One",
|
||||
},
|
||||
{
|
||||
"admin": false,
|
||||
"display_order": 1,
|
||||
"display_name": "Category Number Two",
|
||||
}
|
||||
]
|
||||
}
|
||||
|
|
@ -97,4 +97,4 @@ MAIL_USERNAME = environ.get('MAIL_USERNAME', default='')
|
|||
MAIL_PASSWORD = environ.get('MAIL_PASSWORD', default='')
|
||||
|
||||
# Local file path
|
||||
SYNC_FILE_ROOT = './SPECS'
|
||||
SYNC_FILE_ROOT = 'tests/data/IMPORT_TEST'
|
||||
|
|
@ -2,5 +2,121 @@
|
|||
# loop over all the categories in the database
|
||||
# assure we have a directory with the correct name
|
||||
# assure it contains a valid json file called categories.json
|
||||
import json
|
||||
import os
|
||||
import pathlib
|
||||
import re
|
||||
import shutil
|
||||
|
||||
categories = db.
|
||||
from crc import db, app
|
||||
from crc.models.file import FileModel
|
||||
from crc.models.workflow import WorkflowSpecCategoryModel, WorkflowSpecCategoryModelSchema, WorkflowSpecModelSchema, \
|
||||
WorkflowSpecModel
|
||||
|
||||
LIBRARY_SPECS = "Library Specs"
|
||||
STAND_ALONE_SPECS = "Stand Alone"
|
||||
MASTER_SPECIFICATION = "Master Specification"
|
||||
REFERENCE_FILES = "Reference Files"
|
||||
SPECIAL_FOLDERS = [LIBRARY_SPECS, MASTER_SPECIFICATION, REFERENCE_FILES]
|
||||
CAT_JSON_FILE = "category.json"
|
||||
WF_JSON_FILE = "workflow.json"
|
||||
|
||||
|
||||
base_dir = '../SPECS'
|
||||
app_root = app.root_path
|
||||
path = os.path.join(app_root, '..', 'SPECS')
|
||||
CAT_SCHEMA = WorkflowSpecCategoryModelSchema()
|
||||
SPEC_SCHEMA = WorkflowSpecModelSchema()
|
||||
|
||||
|
||||
def remove_all_json_files(path):
|
||||
for json_file in pathlib.Path(path).glob('*.json'):
|
||||
print("removing ", json_file)
|
||||
os.remove(json_file)
|
||||
|
||||
|
||||
def update_workflows_for_category(path, schemas, category_id):
|
||||
for schema in schemas:
|
||||
orig_path = os.path.join(path, schema.display_name)
|
||||
new_path = os.path.join(path, schema.id)
|
||||
if (os.path.exists(orig_path)):
|
||||
os.rename(orig_path, new_path)
|
||||
print(new_path)
|
||||
update_spec(new_path, schema, category_id)
|
||||
|
||||
|
||||
def update_spec(path, schema, category_id):
|
||||
json_data = SPEC_SCHEMA.dump(schema)
|
||||
remove_all_json_files(path)
|
||||
|
||||
# Fixup the libraries
|
||||
lib_ids = list(map(lambda x: x['id'], json_data['libraries']))
|
||||
|
||||
# calculate the primary process id, and primary file name
|
||||
file = db.session.query(FileModel).\
|
||||
filter(FileModel.workflow_spec_id == schema.id).\
|
||||
filter(FileModel.primary == True).first()
|
||||
if(file):
|
||||
json_data['primary_file_name'] = file.name
|
||||
json_data['primary_process_id'] = file.primary_process_id
|
||||
else:
|
||||
print("This workflow doesn't have a primary process:", json_data)
|
||||
|
||||
json_data['category_id'] = category_id
|
||||
json_data.pop('category', None)
|
||||
json_data.pop('parents', None)
|
||||
if json_data['library'] is None:
|
||||
json_data['library'] = False
|
||||
|
||||
json_data['libraries'] = lib_ids
|
||||
if not os.path.exists(path):
|
||||
os.makedirs(path)
|
||||
json_file_name = os.path.join(path, 'workflow.json')
|
||||
with open(json_file_name, 'w') as wf_handle:
|
||||
json.dump(json_data, wf_handle, indent=4)
|
||||
|
||||
# Clean up json files
|
||||
remove_all_json_files(path)
|
||||
|
||||
# Clean up libraries
|
||||
lib_path = os.path.join(path, LIBRARY_SPECS)
|
||||
remove_all_json_files(lib_path)
|
||||
workflows = db.session.query(WorkflowSpecModel).filter(WorkflowSpecModel.library == True)
|
||||
update_workflows_for_category(lib_path, workflows, "")
|
||||
|
||||
# Clean up reference Files
|
||||
ref_path = os.path.join(path, REFERENCE_FILES)
|
||||
old_ref_path = os.path.join(path,'Reference')
|
||||
if os.path.exists(old_ref_path):
|
||||
os.rename(old_ref_path, ref_path)
|
||||
remove_all_json_files(ref_path)
|
||||
|
||||
# Clean up the master spec
|
||||
tlw = os.path.join(path, MASTER_SPECIFICATION, "Top Level Workflow")
|
||||
master_path = os.path.join(path, MASTER_SPECIFICATION)
|
||||
if os.path.exists(tlw):
|
||||
for src_file in pathlib.Path(tlw).glob('*.*'):
|
||||
shutil.copy(src_file, master_path)
|
||||
remove_all_json_files(master_path)
|
||||
schema = db.session.query(WorkflowSpecModel).filter(WorkflowSpecModel.is_master_spec == True).first()
|
||||
update_spec(master_path, schema, "")
|
||||
|
||||
|
||||
# Fix all the categories
|
||||
categories = db.session.query(WorkflowSpecCategoryModel).all()
|
||||
for category in categories:
|
||||
json_data = CAT_SCHEMA.dump(category)
|
||||
orig_path = os.path.join(path, category.display_name)
|
||||
new_name = re.sub(r'[^A-Za-z0-9]', '_', category.display_name).lower()
|
||||
new_path = os.path.join(path, new_name)
|
||||
json_data['id'] = new_name
|
||||
if (os.path.exists(orig_path)):
|
||||
os.rename(orig_path, new_path)
|
||||
|
||||
remove_all_json_files(new_path)
|
||||
json_file_name = os.path.join(new_path, 'category.json')
|
||||
with open(json_file_name, 'w') as f_handle:
|
||||
json.dump(json_data, f_handle, indent=4)
|
||||
|
||||
workflows = db.session.query(WorkflowSpecModel).filter(WorkflowSpecModel.category_id == category.id)
|
||||
update_workflows_for_category(new_path, workflows, new_name)
|
||||
|
|
@ -0,0 +1,6 @@
|
|||
{
|
||||
"admin": false,
|
||||
"display_name": "Library Specs",
|
||||
"id": "Library Specs",
|
||||
"display_order": 10000
|
||||
}
|
||||
Loading…
Reference in New Issue