b0c723f021
Merge remote-tracking branch 'origin/feature/get-spec-script-613' into chore/variables-in-forms-550
2022-02-17 10:35:06 -05:00
8d49e2bfbb
Merge branch 'dev' into chore/variables-in-forms-550
2022-02-17 10:32:40 -05:00
7885481b84
Ignore hidden files
2022-02-16 15:55:42 -05:00
fca6eb1582
Script to get workflow spec information from a workflow spec id
2022-02-16 15:54:30 -05:00
0ad9843569
Dealing with some changes in SpiffWorkflow's latest release. I think this gets all tests passing again, and behaving as expected.
2022-02-16 10:46:46 -05:00
cc6f80bea9
fixing some paths.
2022-02-15 16:25:52 -05:00
c0af75a010
Merge branch 'dev' into feature/upgrade_spiff
2022-02-15 16:25:13 -05:00
093741fa90
By default the system will start up the scheduled tasks, which is usually what you want, but in development
...
it can be kind of irritating for this stuff to be spinning up when you are trying to debug something, so just set
PROCESS_WAITING_TASKS to false in instance/config.py and voila!!
2022-02-15 14:07:09 -05:00
7a91363db1
By default the system will start up the scheduled tasks, which is usually what you want, but in development
...
it can be kind of irritating for this stuff to be spinning up when you are trying to debug something, so just set
PROCESS_WAITING_TASKS to false in instance/config.py and voila!!
2022-02-15 11:06:11 -05:00
63de48ccb6
Merge branch 'feature/spec_files_wthout_db' into git-integration-fixes-596
2022-02-11 12:57:57 -05:00
de797c4f32
Added examples for changes and untracked
2022-02-11 12:45:29 -05:00
0e51def09f
Cleanup - removed old unused methods
2022-02-11 12:18:20 -05:00
88b662ea38
modified get_remote_url to use configuration, instead of hard-coding the remote host
2022-02-11 12:17:32 -05:00
648383f2ea
for some reason jenkins doesn't like the spec_category_reorder test, so just doing it a different way.
2022-02-11 11:37:25 -05:00
bf4f6909b9
Don't show the .git directory.
2022-02-11 11:06:26 -05:00
7a99859108
fixing some failing test
2022-02-11 11:00:42 -05:00
1b993ea227
updating readme
2022-02-11 09:47:49 -05:00
3993297360
minor fixes to the study api to get things working locally when we pull down a database from testing.
2022-02-10 18:19:57 -05:00
1858cd314f
Assure we can call get_spec and it can return the master spec correctly.
2022-02-10 18:04:32 -05:00
a047c63c32
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-10 16:53:22 -05:00
1e4ec6f395
fixes to the workflow spec schema, so we can load null things without stuff blowing up.
2022-02-10 16:53:15 -05:00
b7893688ae
tweak
2022-02-10 16:21:59 -05:00
edaf6e205e
Not certain if this works, but this should help finding data maybe.
2022-02-10 16:10:35 -05:00
eb7760fa55
Adding the migration - very destructive, but required for running the app.
...
minor fixes - there is still some weird problems with study id and user id being null that I need to track down, but the issue is sporadic, and hard to track down.
2022-02-10 11:50:31 -05:00
3ebffeed33
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-10 11:34:56 -05:00
4280fa6610
Assure the spec has the corect category id on it.
2022-02-10 11:34:50 -05:00
3ee95b3c39
gets master spec
2022-02-10 11:29:38 -05:00
f73b29cda2
Removing all the old unused outdated specs in the static directory.
2022-02-10 10:47:05 -05:00
df3f67601c
performance improvements. and last rements of load_example_data()
2022-02-09 23:29:39 -05:00
f12c4aba52
Refactor the workflow_spec_service so it doesn't cache anything, it always reads what it needs from the file system.
2022-02-09 21:06:55 -05:00
cf71f68ad9
all tests passing!!!!!!!!!!!!!
2022-02-09 15:30:07 -05:00
2cc20d4b9d
really need to avoid any kind of caching in the WorkflowSpecService
2022-02-09 14:43:32 -05:00
77b1692e2f
typo
2022-02-09 13:52:48 -05:00
c830c468b6
Merge remote-tracking branch 'origin/feature/spec_files_wthout_db' into feature/spec_files_wthout_db
2022-02-09 13:41:53 -05:00
b788bbf4f4
revert this back
2022-02-09 13:41:50 -05:00
89e02c6207
really need to avoid any kind of caching in the WorkflowSpecService
2022-02-09 13:37:57 -05:00
b5099cf5a2
Merge remote-tracking branch 'origin/feature/spec_files_wthout_db' into feature/spec_files_wthout_db
2022-02-09 13:09:49 -05:00
595b866f41
return empty list if you dont find standalones or libraries
2022-02-09 13:09:46 -05:00
7e7821a5e7
more test passing
2022-02-09 13:01:26 -05:00
db93f9be4e
fixing the test_spec_files
2022-02-09 12:44:54 -05:00
e9fd76ed99
lookup service tests passing, but I need to revist this.
2022-02-09 12:11:51 -05:00
de6d7eee84
nearly all study tests work.
2022-02-09 12:03:45 -05:00
f72b25d9be
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-09 11:37:58 -05:00
8e7c8c87c3
down to just 38 failed tests
2022-02-09 11:37:54 -05:00
5bd25b9f60
get all specs change
2022-02-09 11:34:17 -05:00
148796d311
fixes add_category
2022-02-09 11:24:41 -05:00
38d64b1ffd
fixes a workflow model related test
...
yes i call a service from a service whoops
2022-02-09 11:07:09 -05:00
1c033ce7f2
Merge branch 'feature/spec_files_wthout_db' of https://github.com/sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-09 10:55:19 -05:00
9576089e84
Reorder categories
2022-02-09 10:55:02 -05:00
8c5f3a8cfb
slight model change thing for categories
2022-02-09 10:27:46 -05:00
cc915ac25a
refactoring the study service.
2022-02-09 08:50:00 -05:00
4058078c12
index, not index_of
2022-02-08 17:45:14 -05:00
2e4bab9d04
Add TODO
2022-02-08 15:04:47 -05:00
65d6728be7
pass specs to _add_all_workflow_specs_to_study
2022-02-08 15:03:00 -05:00
420f50f44a
Defaults for WorkflowSpecInfo
2022-02-08 14:40:33 -05:00
f1a75ca6bf
getting default display_order working correctly
2022-02-08 14:10:56 -05:00
25ecc1593a
test_workflow_spec_api passing.
2022-02-08 13:35:27 -05:00
df85e5cd7f
Merge branch 'feature/spec_files_wthout_db' of https://github.com/sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-08 12:57:10 -05:00
916418dcf3
For Dan
2022-02-08 12:53:20 -05:00
082ba18c2d
got one more test to work.
2022-02-08 11:34:07 -05:00
6c0e38c0a5
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-08 11:31:56 -05:00
dc040f190e
got one more test to work.
2022-02-08 11:30:13 -05:00
38c30adbfc
i think this fixes adding and removing libraries to a spec
2022-02-08 11:27:20 -05:00
3f856355e2
Merge branch 'git-integration-596' into feature/spec_files_wthout_db
...
# Conflicts:
# config/testing.py
# crc/services/lookup_service.py
2022-02-08 10:38:03 -05:00
7b031c26dc
small change to libraries in workflow.py
2022-02-08 10:06:20 -05:00
265381f48c
Delete TODO comment. Done
2022-02-07 16:44:59 -05:00
3444a34527
Merge branch 'feature/spec_files_wthout_db' of https://github.com/sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-07 16:34:03 -05:00
2bd833446e
get_spec not static
2022-02-07 16:33:42 -05:00
df67572549
puts specs into categories
2022-02-07 16:27:45 -05:00
2bd0647cd4
No longer pass category_name
2022-02-07 16:13:38 -05:00
80322b392f
Get category_name from fields
2022-02-07 16:09:51 -05:00
aa9807a543
heres the categories
2022-02-07 15:45:09 -05:00
f40fb26a8f
a few more tests passing
2022-02-07 15:17:32 -05:00
1d7ecad51f
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-07 14:58:42 -05:00
4b8d193fb9
a few more tests passing
2022-02-07 14:58:25 -05:00
6c2690d27f
rm duplicate method
2022-02-07 14:12:29 -05:00
d4b04f5b80
fixes the import thing for real
2022-02-07 14:10:10 -05:00
e24a81b924
Merge branch 'feature/spec_files_wthout_db' of https://github.com/sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-07 13:35:51 -05:00
d64853fa5b
two passing tests around the WorkflowSpecService
2022-02-07 13:34:13 -05:00
b6d6e21360
Merge branch 'feature/spec_files_wthout_db' of https://github.com/sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-07 13:01:36 -05:00
056f901f9a
WIP - its just caos right now.
2022-02-07 12:59:48 -05:00
ad095aaaf5
don't try to load the workflowspecservice too early.
2022-02-07 12:38:00 -05:00
abc17a8aff
load the workflow_spec_service from app to avoid frequent file scans.
2022-02-07 12:30:20 -05:00
e4f7e14a4d
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-07 12:18:36 -05:00
1c384a78e9
the tests kind of try and run now ...
2022-02-07 12:18:32 -05:00
c78140e60c
fixed spec_file.py
2022-02-07 12:17:49 -05:00
2a6578b785
fixed workflow.py
2022-02-07 12:10:57 -05:00
2a6e8315a1
*** WIP ***
...
Committing to deal w/ the migration
2022-02-07 11:22:45 -05:00
8ec39bca15
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-07 11:00:28 -05:00
ed07907ee2
at least allow the tests to spin up, even if they all fail.
2022-02-07 11:00:19 -05:00
66906c3786
fix a couple things
2022-02-07 10:57:34 -05:00
1abb2490e5
Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db
2022-02-07 10:33:28 -05:00
4ba122fff3
WIP - completely broken.
2022-02-07 09:12:11 -05:00
699d0ab797
updated method calls in workflow.py
...
except for reordering
2022-02-04 15:31:36 -05:00
2383c7d76d
WIP - lots of random changes, trying to swtich over
2022-02-04 14:50:31 -05:00
2fb6746f6b
new methods
2022-02-04 14:45:52 -05:00
36911d35ac
Added description of the service
2022-02-04 14:03:37 -05:00
6765afbd02
WIP - Move the categories and specifications out of the database.
2022-02-04 13:51:39 -05:00
2706632cda
Fix origin/origin problem
2022-02-03 07:14:16 -05:00
6fa729900c
Bug? origin/origin/brach, rather than origin/branch
2022-02-03 07:10:38 -05:00
64ffbde3d9
Remove unused code
2022-02-03 06:47:41 -05:00
2d48151976
Fix when checkout branch does not exist yet
...
First attempt at merge
2022-02-03 06:47:02 -05:00
e9c7f3d9b6
Force checkout of branch when loading repo
2022-02-02 14:48:47 -05:00
21b5d034e2
authentication
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variable name changes for readability
removed unused code
2022-02-02 14:11:41 -05:00
e103845218
fixing failing tests around default primary processes
...
Removing a ton of ununsed code from example_data.
2022-02-02 13:30:54 -05:00
a45c5959ef
First attempt at adding credentials
2022-02-02 13:24:54 -05:00
4ec6e403f5
1. Created a UserFileService, so it's clear what we use when for File Services, UserFiles, SpecFiles, and ReferenceFiles each function differently.
...
2. Reference Files and Spec Files are written to disk, they do not exist in the database at all.
2022-02-02 12:59:56 -05:00
6f233a9b79
removed unused code
2022-02-02 12:51:14 -05:00
35e2a53b09
Actually use the model
2022-02-02 12:35:08 -05:00
55697c6c88
Return the schema
2022-02-02 12:04:28 -05:00
ec054bbdf1
set tracking on the active branch
2022-02-02 11:48:05 -05:00
558d6f47e2
removed unused code from get_repo
...
started pull_from_remote
2022-02-02 11:30:05 -05:00
2a0d71aab6
Status was removed from the model
2022-02-02 10:04:52 -05:00
1cb6465f22
Return the schema
2022-02-02 10:04:02 -05:00
8a8c3de8c4
clone repo if it doesn't exist
2022-02-01 16:25:46 -05:00
c1a5032014
WIP modifying workflow service to remove value expression
2022-02-01 15:44:55 -05:00
070c3cfd5d
*** WIP ***
...
New API endpoints, and associated methods.
Services for the new endpoints
Minimal test
2022-02-01 10:49:35 -05:00
c07c429ae1
Fix for new version of Pandas. They check data type now.
2022-02-01 10:42:18 -05:00
c9b7d95a83
*** WIP ***
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Beginning of Git integration
- added gitpython to Pipfile
- started additions for api, model, service, and a test
2022-01-28 16:11:36 -05:00
4c00a5762f
partial commit - new spec_file_service, and new spec_file_api endpoints that use spec and file name, not file id.
...
removed worklow_sync
cleaned up file and workflow models
most of the test are broken.
2022-01-28 06:42:37 -05:00
97c29bf77c
Merge pull request #449 from sartography/files-to-filesystem-572
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Files to filesystem 572
2022-01-26 10:11:26 -05:00
d82367ab2a
Move temp_migration_service code into migration 7225d990740e
...
Delete test_files_to_filesystem and test_files_from_filesystem--they were only used to give me access to the migration methods
2022-01-26 09:58:46 -05:00
f3637ee6a0
resolving todos, as they are done, and removing commented out code that is no longer in use.
2022-01-25 16:37:17 -05:00
8529465322
Removed the method get_spec_data_files completly - using get_spec_files and get_spec_data to get this information instead.
...
Only load the spec data files if you are creating a new workflow, otherwise just deserialize the json.
Removed the stuff about calculaing the version of the spec, as we don't use it.
2022-01-25 16:10:54 -05:00
ae86ab4790
Make erroring workflows visible
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The `process_erroring_workflows` method is called by our scheduler in __init__.py
2022-01-25 12:18:29 -05:00
58b3378fbf
Merge pull request #448 from sartography/get-spec-from-workflow-id-589
...
Get spec from workflow id #589
2022-01-24 16:40:53 -05:00
9690ebf883
minor minor stuff.
2022-01-24 14:43:36 -05:00
1fe65ff6b7
Script to get a workflow spec from a workflow id.
2022-01-24 12:40:50 -05:00
662014d378
Merge branch 'fix-login-590' into missing-bpmn-534
2022-01-21 15:31:13 -05:00
7da2fa2171
Fix for failing tests
2022-01-21 15:13:05 -05:00
65345a8e91
We can now set our own user_id in instance.config so that user dhf8r isn't always logged in.
2022-01-21 14:42:36 -05:00
91fa44b2ab
** WIP **
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Committing so I can work on another ticket.
2022-01-21 14:37:11 -05:00
58658d9507
Create separate tags for reference files and spec files
2022-01-20 15:58:31 -05:00
bc65f1c64a
Limit modifying reference files to admins
2022-01-20 15:43:32 -05:00
76b09a418e
Created separate api files for spec_files and reference_files
2022-01-20 15:22:47 -05:00
ca54b850cd
UNDO my previous commit regarding `get_files needs to have workflow_spec_id`
...
We need to call `get_spec_files` instead now
2022-01-20 14:57:32 -05:00
f815add699
1. Add a default directory for the location of SYNC files.
...
2. Added a last_updated column to the lookup table
3. The Lookup service now uses the above, and compares it to the actual file date, we can then rebuild the lookup if needed.
4. That 755 migration loads up the models, so when you change the models, the migration starts to fail. Not really sure what to do here, but modify the migration while we are in process.
2022-01-20 13:05:58 -05:00
9ea1399578
get_files needs to have workflow_spec_id
2022-01-20 09:54:22 -05:00
68820c67cb
Removed (almost) all references to WorkflowSpecDependencyFile
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(There is still a call in the lookup service, but we need to decide how to fix that)
2022-01-19 16:12:54 -05:00
16a9a18c5b
Fixed get reference file info, and added test
2022-01-19 15:17:35 -05:00
091d71eb0f
Cleaned up code around differences between file info and file data
...
Cleaned up some api code around differences between file, spec_file, and reference_file
Cleaned up some api code around differences between file info and file data
Fixed some tests for file api
2022-01-19 13:47:14 -05:00
d83f28e1a7
Pushed so Dan can play
2022-01-18 15:55:49 -05:00
68ac056457
Merge branch 'dev' into files-to-filesystem-572
2022-01-18 08:18:14 -05:00
6da6e05171
*** WIP ***
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code for updating spec files
some cleanup
tests pass, but we don't have all the tests we need.
2022-01-13 15:24:29 -05:00
b99ed73951
Remove unused imports
2022-01-12 15:00:26 -05:00
cfa9f00bf3
*** WIP ***
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Moved reference files to their own service
2022-01-12 14:37:33 -05:00
b6b9482a64
*** WIP ***
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Incremental commit. Mainly cleaning up failing tests.
2022-01-12 13:16:09 -05:00
e67a1554ea
Always but always but ALWAYS, use server_default=func.now() when setting up a datetime field we autopopulate.
2022-01-12 12:33:59 -05:00
c2a11a7d95
fixing an error where I accidentally deleted a bit of the API.
2022-01-12 09:58:34 -05:00
d346589e07
1. added the ability to filter on level and user.
...
2. added a total to the response, so you can see what the total count of users is.
3. adding user_uid to the task_log table.
2022-01-12 08:58:50 -05:00
9cc91f92c3
*** WIP ***
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cleanup - removing commented code
2022-01-11 15:55:08 -05:00
4df2ed6ce4
*** WIP ***
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Failing tests, and missing functionality.
Committing to get stuff on Github.
2022-01-11 15:30:22 -05:00
7176452fe3
forgot the migration, also fixing an error in the TaskLogQuerySchema.
2022-01-10 13:26:16 -05:00
962d05c875
1. Created a TaskLoggingService to encapsulate what we are doing with Task Logging through BPMN Script calls and API calls from the front end.
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2. Added two api endpoints that will allow us to get all the logs for a specific workflow or study.
3. Assured that requests for logs are paginated, sortable, and can be limited to a specific code if needed.
4. Assure that we only use logging levels that match the log levels of Python.
2022-01-10 13:16:54 -05:00
f537fd7fbf
*** WIP ***
2022-01-07 15:58:23 -05:00
dc27f795c8
*** WIP ***
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Committing because it is Friday afternoon, and my computer is acting flaky
2022-01-07 15:34:51 -05:00
86a6039dc8
*** WIP ***
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**Many** tests are failing!
Committing so I can merge dev into this branch
2022-01-06 11:46:54 -05:00
110e2c56f8
cli entry point for temp_migration_service.
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Ultimately, this will call the real service.
2022-01-04 07:28:23 -05:00
7f9519736c
fixed some issues with how we look up records. Try to depend on the data_obj
2022-01-04 07:26:12 -05:00
2cd0f84a47
Merge branch 'dev' into files-to-filesystem-572
2022-01-03 08:06:17 -05:00
1446302a04
A quick fix for an error we are seeing in testing.
2021-12-30 15:27:31 -05:00
3480e1c8ab
use a signal, in addition to firing off a cancel notify when a workflow is restarted.
2021-12-23 15:30:09 -05:00
bd3176eea6
Fixes #578 - issue with us displaying an incorrect end event in some cases.
2021-12-22 16:27:52 -05:00
c83b047881
Fixing some bugs I introduced with the latest fix.
2021-12-21 16:22:41 -05:00
f129509802
Looks like reording the deletes allows us to remove workflow specs a little easier. Tested this with libraries, and seems to work ok.
2021-12-20 14:36:45 -05:00
3fa5505970
Cleanup - remove print statements
2021-12-17 12:30:10 -05:00
6073412d82
Clean up imports
2021-12-17 12:03:45 -05:00
aa27df7840
Process the spec files and their metadata
2021-12-17 11:46:21 -05:00
a81f25f0ee
Just kidding. We should make deepcopy and put in fake data 4 valdiation
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see above. previously i deleted this, because i didnt want unitializsed data in task data. well heres a hint. don't put it in task data. make a deep copy and hold on to that for validation pursposes
2021-12-16 14:47:04 -05:00
5c90ce01a6
*** WIP ***
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Temp services `ToFilesystemService` and `FromFilesystemService` for migrating files To and From the filesystem - Not sure where these classes will end up
Tests to call the two services.
upgrade method in migration that writes workflow spec files and metadata to filesystem
2021-12-16 14:22:37 -05:00
338352017b
*** WIP ***
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Moving files to the filesystem
Tools for reading/writing metadata for categories and specs
2021-12-16 08:41:49 -05:00
421e4fd9aa
Fixes related to resent commit to SpiffWorkflow that provides better handling for workflows that loop back on themselves.
2021-12-15 16:00:31 -05:00
e62a99af96
Merge pull request #438 from sartography/bug/fix-task-data
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Bug/fix task data
2021-12-13 13:31:37 -05:00
b5f2fe05dc
Merge pull request #439 from sartography/workflow-spec-delete-217
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Problem deleting workflow spec #217
2021-12-13 13:19:56 -05:00
c46800171d
Merge remote-tracking branch 'origin/dev' into bug/fix-task-data
2021-12-13 13:18:00 -05:00
ad9a480f93
Merge remote-tracking branch 'origin/dev' into waiting-workflow-errors-566
2021-12-13 13:05:02 -05:00
0bb06f380a
Merge pull request #436 from sartography/more-study-statuses-562
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More study statuses #562
2021-12-13 13:02:57 -05:00
407cc8dd69
Merge pull request #435 from sartography/bug/scheduler_task_recursion_depth
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#557 - scheduler recursion because each call to 'process_witing_tasks…
2021-12-13 13:01:31 -05:00
cdaad5dcc0
Allow 'none' for progress_status
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Well this fixes tests but also, I dont think you necessarily have this right off the bat if you havent done anything in a study, which i handle on the frontend. so null is fine
2021-12-13 12:34:32 -05:00
8b27423172
Updating study model schema to include Progress Status
2021-12-13 12:29:15 -05:00
daebf42a30
Move some of the work in `crc.api.workflow.delete_workflow_specification` to separate workflow_service methods
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Added a session.commit to `delete_workflow_spec_task_events`
2021-12-13 11:04:28 -05:00
acbb8898e4
Merge branch 'more-study-statuses-562' into waiting-workflow-errors-566
2021-12-10 16:52:07 -05:00
f748fa3db8
Removed unused imports
2021-12-10 16:48:28 -05:00
d30405226e
Script to get the new progress_status value
2021-12-10 16:16:33 -05:00
100e822f2e
Fixes for set_study_progress_status to use new ProgressStatus enum
2021-12-10 16:15:49 -05:00
9cd5022bf0
Set progress_status to in_progress when creating a new study.
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-- I'm not sure if this is what we want.
2021-12-10 16:00:33 -05:00
6d09aa1817
We moved the new statuses to a new column and created a separate enum class for them.
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They really are sub_statuses of the in_progress status
2021-12-10 15:57:02 -05:00
61975093f9
Renamed some files to include the word `progress`
2021-12-10 15:47:34 -05:00
f9fbb32641
Take this garbage out
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I can say that because I originally wrote that garbage
2021-12-10 12:10:08 -05:00
962cf7c32c
Fixes problem with initializing some task data fields
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we had a problem where sometimes, task data gets some values set in its fields to None, which conflicts with default values. this fixes that
2021-12-10 11:33:26 -05:00
52baf25459
In `WorkflowService.do_waiting`, if a workflow causes an exception, change its status from `waiting` to `erroring` so we don't continue to call it in `do_waiting`.
2021-12-09 15:33:39 -05:00
06960644fa
#557 - scheduler recursion because each call to 'process_witing_tasks' would kick off an additional scheduler by settting up a new app_context.
2021-12-09 08:54:44 -05:00
23fa28bc23
Merge pull request #434 from sartography/bug/ldap_service_rollback_expoded_the_world
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The LDAP service didn't do a good enough check to see if the record w…
2021-12-09 06:42:02 -05:00
412290f2ab
The LDAP service didn't do a good enough check to see if the record was already in the database. This caused an error, which left the workflow in a waiting state. And that waiting state meant the error would just happen a million times over again until we pushed up this code change.
2021-12-09 06:33:30 -05:00
6db9cdabc7
New study statuses
2021-12-08 10:50:30 -05:00
0cfa59bfea
Merge pull request #429 from sartography/chore/clear-form-data-553
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Fixes #553 - Don't load Form data
2021-12-08 10:37:44 -05:00
b28ddef842
Merge pull request #430 from sartography/study-status-scripts-556
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Study status scripts #556
2021-12-08 10:36:53 -05:00
ffafc1674a
assure we don't overwrite task data with a previous form submission if that data already exists.
2021-12-07 17:04:20 -05:00
8813098190
Updated to use new ProtocolBuilderCreatorStudy model and schema
2021-12-06 14:37:42 -05:00
db1f3ba6ab
Model and schema for new StudyCreator api endpoint
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Update StudyModel to use new model
2021-12-06 14:36:34 -05:00
791328d520
Don't need to ask the question twice
2021-12-03 12:18:17 -05:00
6be9529b22
Fixed the class names
2021-12-03 11:53:21 -05:00
34b4913542
Restructured `do_task`
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Fixed up `do_task_validate_only`
2021-12-03 11:45:02 -05:00
52bfa848ac
*** WIP ***
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Script to set study status
2021-12-02 17:11:28 -05:00
8c66a3d2ef
Script to get the status of the current script
2021-12-02 15:30:47 -05:00
5cf011f1d9
Quick fix for ldap.
2021-12-02 12:19:36 -05:00
7524e97c9a
Fixes #553 - Don't load Form data
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adds an extension so that you can opt to clear out form data on a given task
2021-12-01 16:11:52 -05:00
ad93b5fae6
We were not correctly handing the possibility of there only being a waiting task (and no ready tasks).
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We also had a problem with the validator throwing a 500 when it was trying tell us it would never finish validation.
2021-11-30 12:44:35 -05:00
ec9d8f8a5c
Merge pull request #425 from sartography/bug/slow_ldap
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Remove wild-card from uid search, it performs very badly. Add a bit …
2021-11-30 11:09:42 -05:00
8cc581611e
Merge pull request #426 from sartography/feature/performance_improvement
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Performance upgrades - study dashboard in less than 2 seconds now
2021-11-30 11:09:28 -05:00
8c30df011b
Merge pull request #427 from sartography/workflow-status-script-548
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Workflow status script #548
2021-11-30 10:51:57 -05:00
c8c8c8b244
Merge pull request #424 from sartography/xls-xlsx-issue-540
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Xls xlsx issue #540
2021-11-30 10:50:33 -05:00
0f1ccd7db5
New script to check workflow status.
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Includes test and test workflow
2021-11-30 08:54:15 -05:00
455c1035f1
Performance upgrade to script.py - reduce the number of times we generate the augmented list of script functions for running python evals.
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Performance upgrade to study_service.py - Don't query on the whole WorkflowModel, just get the status that we need. Saves lots of complex joins.
Performance upgrade to SpiffWorkflow - don't convert to box unless we have to do so.
2021-11-29 17:48:05 -05:00
e5b1daa3d9
Remove wild-card from uid search, it performs very badly. Add a bit of logging so we can easily see performance in the future.
2021-11-29 11:03:14 -05:00
8ec58fd6d7
Assure better error messages when parsing word documents with jinja syntax.
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I also have a pull request into the folks that run the python docx library to improve their error messages that we depend on here.
2021-11-23 14:38:48 -05:00
4a1285b8e0
When validating a workflow, don't run the master workflow multiple times, its a huge waste of time.
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Provide decent data when calling get_study_associate(s) scripts.
2021-11-22 17:17:19 -05:00
5bb7dbfb19
Improve the error messages returned from jinja template processing. Try to find the actual line with an error in it.
2021-11-22 14:46:33 -05:00
12b78c1f99
Value Errors should also alert us that we can't serialize the json.
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Enum Label was depending on the options attribute not existing in some situtations, which is a bad assumption. Rather, check for specific properties, and call back to using options as the default.
2021-11-22 12:37:10 -05:00
4d1f4429ff
Fixing a bug in enum_label that was not working when lookup up an select list from a spreadsheet.
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Assure we raise more thoughtful error messages when running getting exceptions in engine tasks.
Field Options should always be available now due to a fix in Spiffworkflow.
2021-11-22 12:26:30 -05:00
7b02f46403
During validation, options were not being handled correctly for certain types of lookups.
2021-11-17 13:38:41 -05:00
cb77db26a3
Minor edit, for clarity
2021-11-16 12:05:20 -05:00
9f18484ebb
Grab exception when reading older xls spreadsheet into pandas
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Renamed `xls` variable to `xlsx`, so it makes more sense
Added a hint to error_service for validation
2021-11-16 11:54:31 -05:00
8c166bd029
Merge pull request #423 from sartography/test-protocol-builder-519
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Test protocol builder #519
2021-11-11 11:49:57 -05:00
f4f3842059
Fixing a stupid mistake.
2021-11-11 11:45:35 -05:00
197b75c6bf
Quickfix - validation was failing if we had a date object in the task data, but this isn't really a problem. We now use the same JSON serializer as flask does, when doing validations, to better verify behavior with the front end.
2021-11-11 11:18:58 -05:00
c7147274f0
Resolving issues from code review
2021-11-10 17:43:34 -05:00
a8b7cd8bba
Merge branch 'dev' into test-protocol-builder-519
2021-11-10 16:32:34 -05:00
037692f42b
Merge pull request #422 from sartography/chore/group-repeating-validation-536
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Fixes #536 - Group + Repeating property validation
2021-11-10 15:28:04 -05:00
e764bf937d
Merge pull request #421 from sartography/bug/validation_of_enum_label_failing_in_sub_workflows
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Validation was failing for enum_label() expressions when called withi…
2021-11-10 15:26:03 -05:00
81f8aed68b
Merge pull request #420 from sartography/drop-tasklog-on-delete
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Delete Task log model when deleting a study
2021-11-10 15:20:11 -05:00
84f364ce37
Merge branch 'dev' into chore/view-as-382
2021-11-10 15:16:20 -05:00
accdd281fa
Fixes #536 - Group + Repeating property validation
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For now, we should not allow both group and repeat properties on a field together.
2021-11-09 13:21:44 -05:00
5cf742d955
remove unused import
2021-11-09 13:07:01 -05:00
d1eae3c15a
Validation was failing for enum_label() expressions when called within a sub-process. Possible (but unlikely) that this would occur outside validation.
2021-11-09 12:55:06 -05:00
aa1ba59bb1
Delete Task log model when deleting a study
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just a minor fix
2021-11-09 10:42:47 -05:00
b193f56f35
Minor cleanup for readability.
2021-11-08 10:13:07 -05:00
6f09b0d7dd
Added comment to _is_valid_study.
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Fixed get_required_docs. The data returned for get_required_dcs from UVA PB was *very* different than what we had.
2021-11-05 14:37:41 -04:00
d186b24de3
UVA PB returns the info in a list. We want the dictionary in the list
2021-11-05 14:26:21 -04:00
271d4da5ff
Merge branch 'dev' into test-protocol-builder-519
2021-11-05 10:29:20 -04:00
6d548c2a74
*** WIP ***
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Committing to work on another ticket
There are TODOs in study_service
2021-11-05 09:59:14 -04:00
9376d3deaf
Don't error out trying to send an error about invalid review types.
2021-11-04 13:32:57 -04:00
3a36a48b88
Merge pull request #418 from sartography/convert-timestamp-499
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Added ordered arguments to the get_localtime script #499
2021-11-03 14:28:57 -04:00
b03e596dcf
One thing at a time; remove HSRNUMBER for now
2021-11-03 12:58:03 -04:00
9c8ae36ba3
UVA IRB passes back `Q_COMPLETE` and `HSRNUMBER`
2021-11-03 12:40:43 -04:00
7f163285c3
Test w/Alex's ID
2021-11-03 11:56:07 -04:00
8be9a1968b
configure logging
2021-11-03 11:21:39 -04:00
50d4159168
info log didn't show up. Maybe debug?
2021-11-03 10:36:27 -04:00
8b6c8f9518
Logging to troubleshoot API call
2021-11-03 10:14:11 -04:00
1f9c80d70d
Added ordered arguments to the get_localtime script
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Modified the workflow so the first task is a form with booleans that allows me to test all the permutations.
Modified tests to cover all the permutations for calling the script
2021-11-03 08:36:24 -04:00
alicia pritchett
mike cullerton
Dan
Mike Cullerton