Created separate api files for spec_files and reference_files
This commit is contained in:
mike cullerton
parent
ca54b850cd
commit
76b09a418e
28
crc/api.yml
28
crc/api.yml
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@ -1021,7 +1021,7 @@ paths:
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/reference_file:
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get:
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operationId: crc.api.file.get_reference_files
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operationId: crc.api.reference_file.get_reference_files
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summary: Provides a list of existing reference files that are available in the system.
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tags:
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- Files
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@ -1035,7 +1035,7 @@ paths:
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items:
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$ref: "#/components/schemas/File"
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post:
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operationId: crc.api.file.add_reference_file
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operationId: crc.api.reference_file.add_reference_file
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summary: Add a new reference file.
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tags:
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- Files
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@ -1064,7 +1064,7 @@ paths:
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schema:
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type: string
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get:
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operationId: crc.api.file.get_reference_file_info
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operationId: crc.api.reference_file.get_reference_file_info
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summary: Returns the file info for a reference file
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tags:
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- Files
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@ -1078,7 +1078,7 @@ paths:
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format: binary
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example: '<?xml version="1.0" encoding="UTF-8"?><bpmn:definitions></bpmn:definitions>'
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put:
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operationId: crc.api.file.update_reference_file_info
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operationId: crc.api.reference_file.update_reference_file_info
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summary: Update the file_info of a named reference file.
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tags:
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- Files
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@ -1095,7 +1095,7 @@ paths:
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schema:
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$ref: "#/components/schemas/File"
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delete:
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operationId: crc.api.file.delete_reference_file
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operationId: crc.api.reference_file.delete_reference_file
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summary: Remove an existing reference file.
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tags:
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- Files
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@ -1111,7 +1111,7 @@ paths:
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schema:
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type: string
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get:
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operationId: crc.api.file.get_reference_file_data
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operationId: crc.api.reference_file.get_reference_file_data
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summary: Returns only the reference file content
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tags:
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- Files
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@ -1124,7 +1124,7 @@ paths:
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type: string
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format: binary
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put:
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operationId: crc.api.file.update_reference_file_data
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operationId: crc.api.reference_file.update_reference_file_data
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summary: Update the contents of a reference file
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tags:
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- Files
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@ -1157,7 +1157,7 @@ paths:
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schema:
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type: string
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get:
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operationId: crc.api.file.get_spec_files
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operationId: crc.api.spec_file.get_spec_files
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summary: Provide a list of workflow spec files for the given workflow_spec_id. IMPORTANT, only includes metadata, not the file content.
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tags:
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- Files
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@ -1171,7 +1171,7 @@ paths:
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items:
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$ref: "#/components/schemas/File"
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post:
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operationId: crc.api.file.add_spec_file
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operationId: crc.api.spec_file.add_spec_file
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summary: Add a new workflow spec file
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tags:
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- Files
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@ -1200,7 +1200,7 @@ paths:
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schema:
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type: integer
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get:
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operationId: crc.api.file.get_spec_file_info
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operationId: crc.api.spec_file.get_spec_file_info
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summary: Returns metadata about the file
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tags:
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- Files
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@ -1212,7 +1212,7 @@ paths:
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schema:
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$ref: "#components/schemas/File"
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put:
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operationId: crc.api.file.update_spec_file_info
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operationId: crc.api.spec_file.update_spec_file_info
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summary: Update existing spec file with the given parameters.
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tags:
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- Files
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@ -1229,7 +1229,7 @@ paths:
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schema:
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$ref: "#/components/schemas/File"
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delete:
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operationId: crc.api.file.delete_spec_file
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operationId: crc.api.spec_file.delete_spec_file
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summary: Removes an existing workflow spec file.
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tags:
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- Files
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@ -1245,7 +1245,7 @@ paths:
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schema:
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type: integer
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get:
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operationId: crc.api.file.get_spec_file_data
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operationId: crc.api.spec_file.get_spec_file_data
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summary: Returns only the spec file content
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tags:
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- Files
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@ -1258,7 +1258,7 @@ paths:
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type: string
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format: binary
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put:
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operationId: crc.api.file.update_spec_file_data
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operationId: crc.api.spec_file.update_spec_file_data
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summary: Update the contents of a spec file
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tags:
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- Files
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169
crc/api/file.py
169
crc/api/file.py
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@ -1,5 +1,4 @@
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import io
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import os
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from datetime import datetime
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import connexion
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@ -8,8 +7,7 @@ from flask import send_file
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from crc import session
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from crc.api.common import ApiError
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from crc.api.user import verify_token
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from crc.models.file import FileSchema, FileModel, File, FileModelSchema, FileDataModel, FileType, CONTENT_TYPES
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from crc.models.workflow import WorkflowSpecModel
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from crc.models.file import FileSchema, FileModel, File, FileModelSchema, FileDataModel
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from crc.services.document_service import DocumentService
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from crc.services.file_service import FileService
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from crc.services.reference_file_service import ReferenceFileService
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@ -43,23 +41,6 @@ def get_files(workflow_id=None, form_field_key=None,study_id=None):
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return FileSchema(many=True).dump(files)
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def get_spec_files(workflow_spec_id, include_libraries=False):
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if workflow_spec_id is None:
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raise ApiError(code='missing_spec_id',
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message='Please specify the workflow_spec_id.')
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file_models = SpecFileService.get_spec_files(workflow_spec_id=workflow_spec_id,
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include_libraries=include_libraries)
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files = [to_file_api(model) for model in file_models]
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return FileSchema(many=True).dump(files)
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def get_reference_files():
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"""Gets a list of all reference files"""
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results = ReferenceFileService.get_reference_files()
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files = (to_file_api(model) for model in results)
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return FileSchema(many=True).dump(files)
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def add_file(workflow_id=None, task_spec_name=None, form_field_key=None):
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file = connexion.request.files['file']
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if workflow_id:
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@ -79,95 +60,6 @@ def add_file(workflow_id=None, task_spec_name=None, form_field_key=None):
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return FileSchema().dump(to_file_api(file_model))
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def add_spec_file(workflow_spec_id):
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if workflow_spec_id:
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file = connexion.request.files['file']
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# check if we have a primary already
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have_primary = FileModel.query.filter(FileModel.workflow_spec_id==workflow_spec_id, FileModel.type==FileType.bpmn, FileModel.primary==True).all()
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# set this to primary if we don't already have one
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if not have_primary:
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primary = True
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else:
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primary = False
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workflow_spec = session.query(WorkflowSpecModel).filter_by(id=workflow_spec_id).first()
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file_model = SpecFileService.add_workflow_spec_file(workflow_spec, file.filename, file.content_type,
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file.stream.read(), primary=primary)
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return FileSchema().dump(to_file_api(file_model))
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else:
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raise ApiError(code='missing_workflow_spec_id',
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message="You must include a workflow_spec_id")
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def get_reference_file_data(name):
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file_extension = FileService.get_extension(name)
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content_type = CONTENT_TYPES[file_extension]
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file_data = ReferenceFileService().get_reference_file_data(name)
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return send_file(
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io.BytesIO(file_data.data),
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attachment_filename=name,
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mimetype=content_type,
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cache_timeout=-1 # Don't cache these files on the browser.
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)
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def get_reference_file_info(name):
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"""Return metadata for a reference file"""
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file_model = session.query(FileModel).\
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filter_by(name=name).with_for_update().\
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filter_by(archived=False).with_for_update().\
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first()
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if file_model is None:
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# TODO: Should this be 204 or 404?
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raise ApiError('no_such_file', f'The reference file name you provided ({name}) does not exist', status_code=404)
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return FileSchema().dump(to_file_api(file_model))
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def update_reference_file_data(name):
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"""Uses the file service to manage reference-files. They will be used in script tasks to compute values."""
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if 'file' not in connexion.request.files:
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raise ApiError('invalid_file',
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'Expected a file named "file" in the multipart form request', status_code=400)
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file = connexion.request.files['file']
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name_extension = FileService.get_extension(name)
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file_extension = FileService.get_extension(file.filename)
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if name_extension != file_extension:
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raise ApiError('invalid_file_type',
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"The file you uploaded has an extension '%s', but it should have an extension of '%s' " %
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(file_extension, name_extension))
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file_model = session.query(FileModel).filter(FileModel.name==name).first()
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if not file_model:
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raise ApiError(code='file_does_not_exist',
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message=f"The reference file {name} does not exist.")
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else:
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ReferenceFileService().update_reference_file(file_model, file.stream.read())
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return FileSchema().dump(to_file_api(file_model))
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# TODO: do we need a test for this?
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def update_reference_file_info(name, body):
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if name is None:
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raise ApiError(code='missing_parameter',
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message='Please provide a reference file name')
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file_model = session.query(FileModel).filter(FileModel.name==name).first()
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if file_model is None:
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raise ApiError(code='no_such_file',
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message=f"No reference file was found with name: {name}")
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new_file_model = ReferenceFileService.update_reference_file_info(file_model, body)
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return FileSchema().dump(to_file_api(new_file_model))
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def add_reference_file():
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file = connexion.request.files['file']
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file_model = ReferenceFileService.add_reference_file(name=file.filename,
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content_type=file.content_type,
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binary_data=file.stream.read())
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return FileSchema().dump(to_file_api(file_model))
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def update_file_data(file_id):
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file_model = session.query(FileModel).filter_by(id=file_id).with_for_update().first()
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file = connexion.request.files['file']
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@ -177,23 +69,6 @@ def update_file_data(file_id):
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return FileSchema().dump(to_file_api(file_model))
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def update_spec_file_data(file_id):
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file_model = session.query(FileModel).filter_by(id=file_id).with_for_update().first()
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if file_model is None:
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raise ApiError('no_such_file', f'The file id you provided ({file_id}) does not exist')
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if file_model.workflow_spec_id is None:
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raise ApiError(code='no_spec_id',
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message=f'There is no workflow_spec_id for file {file_id}.')
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workflow_spec_model = session.query(WorkflowSpecModel).filter(WorkflowSpecModel.id==file_model.workflow_spec_id).first()
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if workflow_spec_model is None:
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raise ApiError(code='missing_spec',
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message=f'The workflow spec for id {file_model.workflow_spec_id} does not exist.')
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file = connexion.request.files['file']
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SpecFileService().update_spec_file_data(workflow_spec_model, file_model.name, file.stream.read())
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return FileSchema().dump(to_file_api(file_model))
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def get_file_data_by_hash(md5_hash):
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filedatamodel = session.query(FileDataModel).filter(FileDataModel.md5_hash == md5_hash).first()
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return get_file_data(filedatamodel.file_model_id, version=filedatamodel.version)
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@ -216,25 +91,6 @@ def get_file_data(file_id, version=None):
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raise ApiError('missing_file_model', f'The file id you provided ({file_id}) does not exist')
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def get_spec_file_data(file_id):
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file_model = session.query(FileModel).filter(FileModel.id==file_id).first()
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if file_model is not None:
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file_data_model = SpecFileService().get_spec_file_data(file_id)
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if file_data_model is not None:
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return send_file(
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io.BytesIO(file_data_model.data),
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attachment_filename=file_model.name,
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mimetype=file_model.content_type,
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cache_timeout=-1 # Don't cache these files on the browser.
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)
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else:
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raise ApiError(code='missing_data_model',
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message=f'The data model for file {file_id} does not exist.')
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else:
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raise ApiError(code='missing_file_model',
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message=f'The file model for file_id {file_id} does not exist.')
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def get_file_data_link(file_id, auth_token, version=None):
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if not verify_token(auth_token):
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raise ApiError('not_authenticated', 'You need to include an authorization token in the URL with this')
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@ -264,10 +120,6 @@ def get_file_info(file_id):
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return FileSchema().dump(to_file_api(file_model))
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def get_spec_file_info(file_id):
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return get_file_info(file_id)
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def update_file_info(file_id, body):
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if file_id is None:
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raise ApiError('no_such_file', 'Please provide a valid File ID.')
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@ -283,29 +135,10 @@ def update_file_info(file_id, body):
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return FileSchema().dump(to_file_api(file_model))
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def update_spec_file_info(file_id, body):
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if file_id is None:
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raise ApiError('no_such_file', 'Please provide a valid File ID.')
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file_model = session.query(FileModel).filter(FileModel.id==file_id).first()
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if file_model is None:
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raise ApiError('unknown_file_model', 'The file_model "' + file_id + '" is not recognized.')
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new_file_model = SpecFileService().update_spec_file_info(file_model, body)
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return FileSchema().dump(to_file_api(new_file_model))
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def delete_file(file_id):
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FileService.delete_file(file_id)
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def delete_spec_file(file_id):
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SpecFileService.delete_spec_file(file_id)
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def delete_reference_file(name):
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ReferenceFileService().delete_reference_file(name)
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def dmn_from_ss():
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file = connexion.request.files['file']
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result = FileService.dmn_from_spreadsheet(file)
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@ -0,0 +1,94 @@
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from crc import session
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from crc.api.common import ApiError
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from crc.api.file import to_file_api
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from crc.models.file import FileModel, FileSchema, CONTENT_TYPES
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from crc.services.file_service import FileService
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from crc.services.reference_file_service import ReferenceFileService
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from flask import send_file
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import io
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import connexion
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def get_reference_files():
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"""Gets a list of all reference files"""
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results = ReferenceFileService.get_reference_files()
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files = (to_file_api(model) for model in results)
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return FileSchema(many=True).dump(files)
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def get_reference_file_data(name):
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file_extension = FileService.get_extension(name)
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content_type = CONTENT_TYPES[file_extension]
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file_data = ReferenceFileService().get_reference_file_data(name)
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return send_file(
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io.BytesIO(file_data.data),
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attachment_filename=name,
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mimetype=content_type,
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cache_timeout=-1 # Don't cache these files on the browser.
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)
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def get_reference_file_info(name):
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"""Return metadata for a reference file"""
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file_model = session.query(FileModel).\
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filter_by(name=name).with_for_update().\
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filter_by(archived=False).with_for_update().\
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first()
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if file_model is None:
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# TODO: Should this be 204 or 404?
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raise ApiError('no_such_file', f'The reference file name you provided ({name}) does not exist', status_code=404)
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return FileSchema().dump(to_file_api(file_model))
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def update_reference_file_data(name):
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"""Uses the file service to manage reference-files. They will be used in script tasks to compute values."""
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if 'file' not in connexion.request.files:
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raise ApiError('invalid_file',
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'Expected a file named "file" in the multipart form request', status_code=400)
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file = connexion.request.files['file']
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name_extension = FileService.get_extension(name)
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file_extension = FileService.get_extension(file.filename)
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if name_extension != file_extension:
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raise ApiError('invalid_file_type',
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"The file you uploaded has an extension '%s', but it should have an extension of '%s' " %
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(file_extension, name_extension))
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file_model = session.query(FileModel).filter(FileModel.name==name).first()
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if not file_model:
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raise ApiError(code='file_does_not_exist',
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message=f"The reference file {name} does not exist.")
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else:
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ReferenceFileService().update_reference_file(file_model, file.stream.read())
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|
||||
return FileSchema().dump(to_file_api(file_model))
|
||||
|
||||
|
||||
# TODO: do we need a test for this?
|
||||
def update_reference_file_info(name, body):
|
||||
if name is None:
|
||||
raise ApiError(code='missing_parameter',
|
||||
message='Please provide a reference file name')
|
||||
file_model = session.query(FileModel).filter(FileModel.name==name).first()
|
||||
if file_model is None:
|
||||
raise ApiError(code='no_such_file',
|
||||
message=f"No reference file was found with name: {name}")
|
||||
new_file_model = ReferenceFileService.update_reference_file_info(file_model, body)
|
||||
return FileSchema().dump(to_file_api(new_file_model))
|
||||
|
||||
|
||||
def add_reference_file():
|
||||
file = connexion.request.files['file']
|
||||
file_model = ReferenceFileService.add_reference_file(name=file.filename,
|
||||
content_type=file.content_type,
|
||||
binary_data=file.stream.read())
|
||||
return FileSchema().dump(to_file_api(file_model))
|
||||
|
||||
|
||||
def delete_reference_file(name):
|
||||
ReferenceFileService().delete_reference_file(name)
|
||||
|
||||
|
||||
|
|
@ -0,0 +1,97 @@
|
|||
from crc import session
|
||||
from crc.api.common import ApiError
|
||||
from crc.api.file import to_file_api, get_file_info
|
||||
from crc.models.file import FileModel, FileSchema, FileType
|
||||
from crc.models.workflow import WorkflowSpecModel
|
||||
from crc.services.spec_file_service import SpecFileService
|
||||
|
||||
from flask import send_file
|
||||
|
||||
import io
|
||||
import connexion
|
||||
|
||||
|
||||
def get_spec_files(workflow_spec_id, include_libraries=False):
|
||||
if workflow_spec_id is None:
|
||||
raise ApiError(code='missing_spec_id',
|
||||
message='Please specify the workflow_spec_id.')
|
||||
file_models = SpecFileService.get_spec_files(workflow_spec_id=workflow_spec_id,
|
||||
include_libraries=include_libraries)
|
||||
files = [to_file_api(model) for model in file_models]
|
||||
return FileSchema(many=True).dump(files)
|
||||
|
||||
|
||||
def add_spec_file(workflow_spec_id):
|
||||
if workflow_spec_id:
|
||||
file = connexion.request.files['file']
|
||||
# check if we have a primary already
|
||||
have_primary = FileModel.query.filter(FileModel.workflow_spec_id==workflow_spec_id, FileModel.type==FileType.bpmn, FileModel.primary==True).all()
|
||||
# set this to primary if we don't already have one
|
||||
if not have_primary:
|
||||
primary = True
|
||||
else:
|
||||
primary = False
|
||||
workflow_spec = session.query(WorkflowSpecModel).filter_by(id=workflow_spec_id).first()
|
||||
file_model = SpecFileService.add_workflow_spec_file(workflow_spec, file.filename, file.content_type,
|
||||
file.stream.read(), primary=primary)
|
||||
return FileSchema().dump(to_file_api(file_model))
|
||||
else:
|
||||
raise ApiError(code='missing_workflow_spec_id',
|
||||
message="You must include a workflow_spec_id")
|
||||
|
||||
|
||||
def update_spec_file_data(file_id):
|
||||
file_model = session.query(FileModel).filter_by(id=file_id).with_for_update().first()
|
||||
if file_model is None:
|
||||
raise ApiError('no_such_file', f'The file id you provided ({file_id}) does not exist')
|
||||
if file_model.workflow_spec_id is None:
|
||||
raise ApiError(code='no_spec_id',
|
||||
message=f'There is no workflow_spec_id for file {file_id}.')
|
||||
workflow_spec_model = session.query(WorkflowSpecModel).filter(WorkflowSpecModel.id==file_model.workflow_spec_id).first()
|
||||
if workflow_spec_model is None:
|
||||
raise ApiError(code='missing_spec',
|
||||
message=f'The workflow spec for id {file_model.workflow_spec_id} does not exist.')
|
||||
|
||||
file = connexion.request.files['file']
|
||||
SpecFileService().update_spec_file_data(workflow_spec_model, file_model.name, file.stream.read())
|
||||
return FileSchema().dump(to_file_api(file_model))
|
||||
|
||||
|
||||
def get_spec_file_data(file_id):
|
||||
file_model = session.query(FileModel).filter(FileModel.id==file_id).first()
|
||||
if file_model is not None:
|
||||
file_data_model = SpecFileService().get_spec_file_data(file_id)
|
||||
if file_data_model is not None:
|
||||
return send_file(
|
||||
io.BytesIO(file_data_model.data),
|
||||
attachment_filename=file_model.name,
|
||||
mimetype=file_model.content_type,
|
||||
cache_timeout=-1 # Don't cache these files on the browser.
|
||||
)
|
||||
else:
|
||||
raise ApiError(code='missing_data_model',
|
||||
message=f'The data model for file {file_id} does not exist.')
|
||||
else:
|
||||
raise ApiError(code='missing_file_model',
|
||||
message=f'The file model for file_id {file_id} does not exist.')
|
||||
|
||||
|
||||
def get_spec_file_info(file_id):
|
||||
return get_file_info(file_id)
|
||||
|
||||
|
||||
def update_spec_file_info(file_id, body):
|
||||
if file_id is None:
|
||||
raise ApiError('no_such_file', 'Please provide a valid File ID.')
|
||||
file_model = session.query(FileModel).filter(FileModel.id==file_id).first()
|
||||
if file_model is None:
|
||||
raise ApiError('unknown_file_model', 'The file_model "' + file_id + '" is not recognized.')
|
||||
|
||||
new_file_model = SpecFileService().update_spec_file_info(file_model, body)
|
||||
return FileSchema().dump(to_file_api(new_file_model))
|
||||
|
||||
|
||||
def delete_spec_file(file_id):
|
||||
SpecFileService.delete_spec_file(file_id)
|
||||
|
||||
|
||||
Loading…
Reference in New Issue