993c7bc76e
fixed error on api.yml from search / replace
2020-12-11 08:29:37 -05:00
3f56dfe484
Move all workflow sync stuff into new file
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Make changes to api naming scheme
add some error checking around endpoints for missing/invalid endpoints
2020-12-10 10:46:23 -05:00
a8203ed01d
save changes before refactor
2020-12-10 10:06:21 -05:00
e377a05dea
Add some punctuation
2020-12-09 13:50:52 -05:00
c57b17df1e
Add a robust way of adding an API key, update examples and documentation for swagger API and add the ability to completely sync the local system from the remote system.
2020-12-09 12:13:17 -05:00
32c5060a31
No longer use eval on the email address. It is already parsed.
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Tests for single and multiple emails, and email error checking.
Still need to figure out how to implement multiple emails.
2020-12-09 12:11:46 -05:00
0e1aa59fa1
Make a change to make sure that if there is a new file locally that is not present remotely when we pull from the remote, the new local file gets deleted.
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Also: add several things to the requirements.txt that should have been there in the first place.
2020-12-08 13:42:01 -05:00
730d0ca18f
Email script now uses an email address instead of a UVA LDAP user_id.
2020-12-07 16:23:41 -05:00
44c72115ae
Make sure we get the file we intended
2020-12-07 08:50:20 -05:00
f26a8615a4
Get more file details so we can fill out everything locally and also add a method to download the file by md5_hash
2020-12-07 08:49:38 -05:00
93b12a8e82
updates using new navigation from spiff workflow's navigation branch, all tests passing.
2020-12-04 17:56:12 -05:00
cad613cf63
Fix problem when method is run for a workflow that is non-existant locally
2020-12-04 12:00:02 -05:00
d41d018fe3
For a given workflow - find the files that are different from a remote endpoint for the same workflow
2020-12-04 11:49:07 -05:00
3e8d4ca7c9
Add some inline documentation to make the process more clear
2020-12-04 10:23:03 -05:00
10dce542ec
documentation change
2020-12-03 15:27:45 -05:00
0f59d3de09
add endpoint that gets a record for all changed /new workflow_specs at a remote endpoint
2020-12-03 14:45:57 -05:00
bcb45a59c8
allow cors
2020-12-03 08:46:34 -05:00
0e8913434a
refactor a bit
2020-12-03 08:44:15 -05:00
92aa1b971d
commit before removing big long SQL
2020-12-02 16:04:00 -05:00
aca1fb366b
Fixing a failing test and updating the personnel.
2020-12-01 15:47:27 -05:00
e15130e09c
Merge pull request #203 from sartography/151-data-store-exclusive-branch-expression
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Added the ability to use the custom functions within a decision/flow …
2020-12-01 14:44:27 -05:00
801c5df75e
Merge pull request #201 from sartography/verify-end-event-#105
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Verify end event #105
2020-12-01 14:24:12 -05:00
e0c28cbc7d
Make it easer to start things up.
2020-12-01 11:17:07 -05:00
94662c560e
Added the ability to use the custom functions within a decision/flow coming off of an exclusive join
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Altered previous test to test this feature
2020-12-01 09:13:12 -05:00
73e01b347b
Ticket #105 . Verify End Event Documentation. Added explicit call to _process_documentation at end of crc.services.workflow_service.test_spec for the end event
2020-11-24 16:51:18 -05:00
071c98d72e
Some minor config tweaks to try and deal with some database timeout issues.
2020-11-19 11:25:58 -05:00
b8a91a513b
Merge pull request #196 from sartography/128-data-store
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128 data store
2020-11-18 18:55:33 -05:00
b83ab1bcd1
Move data store base into its own file.
2020-11-18 15:34:50 -05:00
d198f124d7
Committing a merge from dev
2020-11-18 15:33:44 -05:00
66693d9f3a
Removing datastore script, as it isn't used in the api at all.
2020-11-18 15:06:28 -05:00
c62b73a539
drop some of the test-only api endpints and rework the tests so they aren't needed
2020-11-18 15:04:36 -05:00
16313609ec
removed call to signal (changed to cancel_notify)
2020-11-18 13:55:30 -05:00
72ade3c367
Add crosstalk test
2020-11-17 10:29:49 -05:00
e9979efb0d
Add some tests
2020-11-17 09:33:29 -05:00
a2dc3c4812
Use Cancel Event
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New title 'New Title'
2020-11-16 09:59:22 -05:00
70425eee0d
Add last_updated field - change the api signature to be closer to what we need going forward, but retain the old methods for testing the script get/set through the API
2020-11-13 12:03:29 -05:00
7c2c725840
save before changing how API works
2020-11-13 09:58:21 -05:00
acaf633b45
Added ID as pk
2020-11-11 11:36:25 -05:00
9a4d167dcd
Add in api changes
2020-11-11 09:44:58 -05:00
cef221be32
Refactor to reuse code
2020-11-10 11:32:59 -05:00
3ba11f5e6b
add user_data_get/set and alter test so that it ensures that we don't grab study_data stuff from the user_data calls
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change the test to mock up the user.
2020-11-10 10:32:37 -05:00
245124779e
Add mostly-working elements of the data-store, compare with dev to see why db is not working after running tests
2020-11-10 08:21:46 -05:00
e598994d34
Change the study_sponsors script so that we can actually call it :
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var = study_info('sponsors')
to keep it more in line with other scripts that we have
2020-11-05 10:31:47 -05:00
1815a4b657
Merge branch '117-save-restore' into dev
2020-11-05 08:24:18 -05:00
a78af4eab8
Run cancel task during interrupt. Currently this uses Signal event. We may change this to the Cancel event.
2020-11-04 14:37:53 -05:00
2931f45187
Add 'sponsors' to study_info call
2020-11-04 14:34:10 -05:00
849a4e9f94
Made changes to how soft_reset works so it is backward compatible - essentially, we use the file if we are doing a soft-reset or a new workflow. NB, this may actually still have problems if we have a workflow with P/SMI and we do a soft-reset on it even if there are no structural changes.
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Also, change how default_value is interpreted, looking at the object attribute rather than the properties list.
2020-10-09 11:00:33 -04:00
8b23cdc05c
commit changes before switching branches
2020-10-09 08:46:14 -04:00
b2aede2b8d
Glob on windows seems to return directories where in linux it does not, so now assuring we don't try to add files from the sub-directory.
2020-10-05 17:35:35 -04:00
014a4d9757
Fixing a failing test and updating the personnel.
2020-09-02 08:24:48 -04:00
b544334f45
1. Updating Personnel BPMN diagram to debug some issues.
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2. Disabling the token timeout for now, to see if this corrects the issues Alex is having with lost work.
3. Raising more thoughtful error messages for unknown lookup options.
4. Providing better validation of default values and injecting the correct value for defaults related to enum lists of all types.
5. Bumping Spiffworkflow library which contains some better error messages and checks.
2020-09-01 15:58:50 -04:00
1052dff549
Merge remote-tracking branch 'origin/dev' into feature/python_eval
2020-08-27 14:33:16 -04:00
5dacc46600
Adding some additional bpmns from Staging server to include in tests.
2020-08-27 14:00:45 -04:00
53d09303d8
Validating that field properties are valid - they must exist as constants on the Task model.
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Making all the lookup field names consistent.
Fixing the lookup service which was failing at times trying to find the correct field to use for building the lookup table.
Updating validation to check for additional fields and properties.
When connexion level errors occur, wrapping it in an API Error to be consistent.
2020-08-27 14:00:14 -04:00
1a713bd140
updating bpmn files from the staging server.
2020-08-27 13:55:27 -04:00
d31fd47837
Merge branch 'dev' into feature/python_eval
2020-08-25 11:08:42 -04:00
5be35e8bab
Adding a study sponsors script to return details about study sponsors
2020-08-25 10:30:46 -04:00
182e375fdc
Adds a test for string manipulation
2020-08-21 13:46:10 -04:00
4dc98a6b6b
Injects current user into task data.
2020-08-21 13:34:37 -04:00
66e49a347a
Minor tweaks to the eval endpoint, which should take both the expression and the data as one data structure.
2020-08-20 16:13:48 -04:00
7f60a19d55
Merge pull request #189 from sartography/feature/documents_publishing
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Update github routines to use branches
2020-08-17 15:52:47 -04:00
8f5488d910
Don't raise an error when validating workflows that use the ldap script.
2020-08-17 15:45:37 -04:00
35b1b20960
Merge remote-tracking branch 'origin/dev' into feature/documents_publishing
2020-08-17 15:19:24 -04:00
dfaffc22b5
Merge remote-tracking branch 'origin/dev' into fix/returning_failed_name_message
2020-08-17 15:18:17 -04:00
d4c5e297cc
Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint
2020-08-17 15:09:11 -04:00
32d47c1417
Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint
2020-08-17 15:08:44 -04:00
c09441d019
Merge branch 'dev' into fix/delete_workflow_endpoint
2020-08-17 15:07:58 -04:00
85ad477b2b
Some minor cleanup on the study status and automatic events. I wanted to avoid having one database model automatically generating other database models as a side effect. The study service now has full responsiblity to recording study events.
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To help in running tests, adding __init__.py methods to all the test directories.
2020-08-17 14:56:00 -04:00
2bd906e96d
Update github routines to use branches
2020-08-14 11:04:22 -06:00
304ca77e3e
Fixing exception within NameError handler
2020-08-14 09:01:15 -06:00
369fe4bb35
Automatic events refactoring
2020-08-14 08:36:46 -06:00
aa010272cc
Automatic event creation in study creation
2020-08-14 08:36:10 -06:00
c57ac6d302
Merge pull request #185 from sartography/feature/107_current_user_info
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calling ldap with no argument will return information about the curre…
2020-08-14 09:18:10 -04:00
08c24b7441
Merge pull request #184 from sartography/PMI_fix
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Pmi fix
2020-08-14 09:17:58 -04:00
c12e2b97f3
calling ldap with no argument will return information about the current user.
2020-08-13 21:09:52 -04:00
1a963cf940
Merge branch 'dev' into PMI_fix
2020-08-13 20:49:45 -04:00
9a5c1d7cfb
I may have finally wrapped my head around full text search in python. Now properly using an index based on simple rather than english dictionary which has far fewer stop words and stemming processes and plays much better to the type ahead search we are trying to provide.
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Stop words are no longer excluded, so "other" is a valid search and gets a result.
2020-08-13 18:13:41 -04:00
e8067fe34e
adding additional data to the study details returned during validation/shield testing.
2020-08-12 17:04:59 -04:00
7bfcdd53cd
Merge branch 'dev' into cr-workflow-108
2020-08-12 10:50:19 -04:00
c4a15be90c
Change dmn files to python standard,
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NB: this means mostly false=>False and true=>True
We may have to decide if we want to add false and true as extensions in the python namespace.
2020-08-12 10:48:59 -04:00
9a31d591ae
Adds user uid and cascades study event in study model. Fixes migration to properly downgrade enums.
2020-08-12 10:13:23 -04:00
79c14ad23c
Unlinking file from workflow instead of trying to delete it
2020-08-10 22:23:20 -06:00
3cfcd74a6a
Just finding a few more edge cases, all tests should pass now.
2020-08-10 15:16:53 -04:00
b53d033400
Cleaning up the delete workflow method in study service so we don't try to delete the same thing more than once)
2020-08-10 14:56:33 -04:00
56b161a234
Fixing the failing tests by passing in workflow.id rather than workflow to the delete workflow endpoint
2020-08-10 13:51:05 -04:00
d3462d2e15
Deleting all dependencies for a workflow
2020-08-10 07:42:56 -06:00
a561a5cddc
Adjusting study events attribute
2020-08-08 18:25:01 -06:00
1ab765b50b
Add test for PMI problem
2020-08-06 10:29:14 -04:00
bf3dae1885
Collecting user generated study changes
2020-08-05 20:29:05 -06:00
c25536dcca
Makes Sonar happy.
2020-08-04 16:42:35 -04:00
2846bf9451
Fleshes out fake PB response, so workflows that pull from PB actually trigger validation errors
2020-08-04 15:50:29 -04:00
b4595b345a
Raises ApiError for 'display_name' extension property exception
2020-08-04 13:59:50 -04:00
04399eec2a
Accepting None for primary_investigator_id
2020-08-04 11:38:46 -06:00
cd9376cf8e
Adding back ability to update studies
2020-08-04 09:13:24 -06:00
50b207307a
Merge branch 'dev' into feature/update_study_status_latest
2020-07-31 14:26:24 -06:00
4fcba113b8
Fixing tests
2020-07-31 11:49:04 -06:00
2c2967e633
Normalizing enum values
2020-07-31 11:19:50 -06:00
5d23223e51
New study status update
2020-07-30 21:03:11 -06:00
73699e66bd
Merge branch 'dev' into feature/admin_impersonations
2020-07-30 17:36:20 -04:00
9704cbcb26
Modifications to the ldap scripts to bring them back in line with what Kelly is doing with the evaluation process.
2020-07-30 13:35:20 -04:00
Kelly McDonald
mike cullerton
Dan
Aaron Louie
Carlos Lopez