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Merge pull request #184 from sartography/PMI_fix 

Pmi fix
This commit is contained in:
Dan Funk 2020-08-14 09:17:58 -04:00 committed by GitHub
parent ec2d1dcefb 1a963cf940
commit 08c24b7441
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GPG Key ID: 4AEE18F83AFDEB23
3 changed files with 273 additions and 93 deletions
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139
crc/static/bpmn/irb_api_personnel/irb_api_personnel.bpmn
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@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:camunda="http://camunda.org/schema/1.0/bpmn" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" id="Definitions_06pyjz2" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="4.0.0">
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:camunda="http://camunda.org/schema/1.0/bpmn" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" id="Definitions_06pyjz2" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.0">
<bpmn:process id="Process_01143nb" isExecutable="true">
<bpmn:startEvent id="StartEvent_1">
<bpmn:outgoing>Flow_0kcrx5l</bpmn:outgoing>
@ -27,7 +27,7 @@
#### {{ pi.PI.display_name }}
##### Title: {{ pi.PI.title }}
##### Department: {{ PI_department }}
##### Department: {{ pi.PI.department }}
##### Affiliation: {{ pi.PI.affiliation }}</bpmn:documentation>
<bpmn:extensionElements>
<camunda:formData>
@ -43,23 +43,24 @@
<camunda:property name="display_name" value="pi.PI.label" />
</camunda:properties>
</bpmn:extensionElements>
<bpmn:incoming>Flow_07f7kkd</bpmn:incoming>
<bpmn:incoming>Flow_147b9li</bpmn:incoming>
<bpmn:outgoing>Flow_1mplloa</bpmn:outgoing>
</bpmn:userTask>
<bpmn:sequenceFlow id="Flow_0kcrx5l" sourceRef="StartEvent_1" targetRef="ScriptTask_LoadPersonnel" />
<bpmn:sequenceFlow id="Flow_1mplloa" sourceRef="Activity_EditPI" targetRef="Activity_0r8pam5" />
<bpmn:sequenceFlow id="Flow_1dcsioh" sourceRef="ScriptTask_LoadPersonnel" targetRef="Activity_0bg56lv" />
<bpmn:sequenceFlow id="Flow_17uqguj" sourceRef="Activity_0bg56lv" targetRef="Gateway_CheckForPI" />
<bpmn:scriptTask id="Activity_0bg56lv" name="Check for PI">
<bpmn:incoming>Flow_1dcsioh</bpmn:incoming>
<bpmn:outgoing>Flow_1vgepkq</bpmn:outgoing>
<bpmn:outgoing>Flow_17uqguj</bpmn:outgoing>
<bpmn:script>pi = {x:investigators[x] for x in investigators.keys() if x[:2] == 'PI'}</bpmn:script>
</bpmn:scriptTask>
<bpmn:exclusiveGateway id="Gateway_CheckForPI" name="PI Cnt">
<bpmn:incoming>Flow_1vgepkq</bpmn:incoming>
<bpmn:incoming>Flow_17uqguj</bpmn:incoming>
<bpmn:outgoing>Flow_147b9li</bpmn:outgoing>
<bpmn:outgoing>Flow_00prawo</bpmn:outgoing>
</bpmn:exclusiveGateway>
<bpmn:sequenceFlow id="Flow_147b9li" name="1 PI from PB" sourceRef="Gateway_CheckForPI" targetRef="Activity_DeterminePI_Department">
<bpmn:sequenceFlow id="Flow_147b9li" name="1 PI from PB" sourceRef="Gateway_CheckForPI" targetRef="Activity_EditPI">
<bpmn:conditionExpression xsi:type="bpmn:tFormalExpression">len(pi.keys()) == 1</bpmn:conditionExpression>
</bpmn:sequenceFlow>
<bpmn:sequenceFlow id="Flow_00prawo" name="No PI from PB" sourceRef="Gateway_CheckForPI" targetRef="Activity_1qwzwyi">
@ -92,122 +93,80 @@
##### Title: {{ sc.title }}
##### Department: {{ sc.department }}
##### Affiliation: {{ sc.affiliation }}</bpmn:documentation>
<bpmn:extensionElements>
<camunda:formData>
<camunda:formField id="sc.access" label="Should this Study Coordinator have full editing access in the system?" type="boolean" defaultValue="true" />
<camunda:formField id="sc.emails" label="Should this Study Coordinator receive automated email notifications?" type="boolean" defaultValue="true" />
<camunda:formField id="sc.access" label="Should this Study Coordinator have full editing access in the system?" type="boolean" />
<camunda:formField id="sc.emails" label="Should this Study Coordinator receive automated email notifications?" type="boolean" defaultValue="yes" />
</camunda:formData>
<camunda:properties>
<camunda:property name="display_name" value="sc.label" />
</camunda:properties>
</bpmn:extensionElements>
<bpmn:incoming>Flow_0xifvai</bpmn:incoming>
<bpmn:outgoing>Flow_1n0k4pd</bpmn:outgoing>
<bpmn:multiInstanceLoopCharacteristics isSequential="true" camunda:collection="scs" camunda:elementVariable="sc" />
<bpmn:multiInstanceLoopCharacteristics camunda:collection="scs" camunda:elementVariable="sc" />
</bpmn:userTask>
<bpmn:sequenceFlow id="Flow_1oqem42" name="No Study Coordinators" sourceRef="Gateway_0jykh6r" targetRef="EndEvent_1qor16n">
<bpmn:conditionExpression xsi:type="bpmn:tFormalExpression">len(scs.keys()) == 0</bpmn:conditionExpression>
</bpmn:sequenceFlow>
<bpmn:sequenceFlow id="Flow_14ti38o" sourceRef="Activity_1qwzwyi" targetRef="Activity_0r8pam5" />
<bpmn:scriptTask id="Activity_DeterminePI_Department" name="Determine PI E0 Department">
<bpmn:incoming>Flow_147b9li</bpmn:incoming>
<bpmn:outgoing>Flow_1grahhv</bpmn:outgoing>
<bpmn:script>LDAP_dept = pi.PI.department
length_LDAP_dept = len(LDAP_dept)
E0_start = LDAP_dept.find("E0:") + 3
E0_slice = LDAP_dept[E0_start:length_LDAP_dept]
E0_first_hyphen = E0_slice.find("-")
E0_dept_start = E0_first_hyphen + 1
E0_school = E0_slice[0:E0_first_hyphen]
isSpace = " " in E0_slice
E0_spec = ""
E0_dept = ""
if isSpace:
E0_first_space = E0_slice.find(" ")
E0_spec_start = E0_first_space + 1
E0_spec_end = len(E0_slice)
E0_dept = E0_slice[E0_dept_start:E0_first_space]
E0_spec = E0_slice[E0_spec_start:E0_spec_end]
</bpmn:script>
</bpmn:scriptTask>
<bpmn:sequenceFlow id="Flow_1vgepkq" sourceRef="Activity_0bg56lv" targetRef="Gateway_CheckForPI" />
<bpmn:sequenceFlow id="Flow_1grahhv" sourceRef="Activity_DeterminePI_Department" targetRef="Activity_1aeas6q" />
<bpmn:sequenceFlow id="Flow_07f7kkd" sourceRef="Activity_1aeas6q" targetRef="Activity_EditPI" />
<bpmn:businessRuleTask id="Activity_1aeas6q" name="Determine PI Department" camunda:decisionRef="Decision_PI_Dept">
<bpmn:incoming>Flow_1grahhv</bpmn:incoming>
<bpmn:outgoing>Flow_07f7kkd</bpmn:outgoing>
</bpmn:businessRuleTask>
</bpmn:process>
<bpmndi:BPMNDiagram id="BPMNDiagram_1">
<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="Process_01143nb">
<bpmndi:BPMNEdge id="Flow_07f7kkd_di" bpmnElement="Flow_07f7kkd">
<di:waypoint x="990" y="120" />
<di:waypoint x="1130" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1grahhv_di" bpmnElement="Flow_1grahhv">
<di:waypoint x="830" y="120" />
<di:waypoint x="890" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1vgepkq_di" bpmnElement="Flow_1vgepkq">
<di:waypoint x="500" y="120" />
<di:waypoint x="565" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_14ti38o_di" bpmnElement="Flow_14ti38o">
<di:waypoint x="1230" y="240" />
<di:waypoint x="1340" y="240" />
<di:waypoint x="1340" y="160" />
<di:waypoint x="800" y="240" />
<di:waypoint x="910" y="240" />
<di:waypoint x="910" y="160" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1oqem42_di" bpmnElement="Flow_1oqem42">
<di:waypoint x="1480" y="145" />
<di:waypoint x="1480" y="270" />
<di:waypoint x="1830" y="270" />
<di:waypoint x="1830" y="138" />
<di:waypoint x="1050" y="145" />
<di:waypoint x="1050" y="270" />
<di:waypoint x="1400" y="270" />
<di:waypoint x="1400" y="138" />
<bpmndi:BPMNLabel>
<dc:Bounds x="1625" y="236" width="64" height="27" />
<dc:Bounds x="1195" y="236" width="64" height="27" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1n0k4pd_di" bpmnElement="Flow_1n0k4pd">
<di:waypoint x="1720" y="120" />
<di:waypoint x="1812" y="120" />
<di:waypoint x="1290" y="120" />
<di:waypoint x="1382" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_0xifvai_di" bpmnElement="Flow_0xifvai">
<di:waypoint x="1505" y="120" />
<di:waypoint x="1620" y="120" />
<di:waypoint x="1075" y="120" />
<di:waypoint x="1190" y="120" />
<bpmndi:BPMNLabel>
<dc:Bounds x="1510" y="86" width="79" height="27" />
<dc:Bounds x="1080" y="86" width="79" height="27" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_0elbjpd_di" bpmnElement="Flow_0elbjpd">
<di:waypoint x="1390" y="120" />
<di:waypoint x="1455" y="120" />
<di:waypoint x="960" y="120" />
<di:waypoint x="1025" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_00prawo_di" bpmnElement="Flow_00prawo">
<di:waypoint x="590" y="145" />
<di:waypoint x="590" y="240" />
<di:waypoint x="1130" y="240" />
<di:waypoint x="570" y="145" />
<di:waypoint x="570" y="240" />
<di:waypoint x="700" y="240" />
<bpmndi:BPMNLabel>
<dc:Bounds x="688" y="222" width="71" height="14" />
<dc:Bounds x="590" y="222" width="71" height="14" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_147b9li_di" bpmnElement="Flow_147b9li">
<di:waypoint x="615" y="120" />
<di:waypoint x="730" y="120" />
<di:waypoint x="595" y="120" />
<di:waypoint x="700" y="120" />
<bpmndi:BPMNLabel>
<dc:Bounds x="615" y="103" width="63" height="14" />
<dc:Bounds x="608" y="102" width="63" height="14" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_17uqguj_di" bpmnElement="Flow_17uqguj">
<di:waypoint x="500" y="120" />
<di:waypoint x="545" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1dcsioh_di" bpmnElement="Flow_1dcsioh">
<di:waypoint x="350" y="120" />
<di:waypoint x="400" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1mplloa_di" bpmnElement="Flow_1mplloa">
<di:waypoint x="1230" y="120" />
<di:waypoint x="1290" y="120" />
<di:waypoint x="800" y="120" />
<di:waypoint x="860" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_0kcrx5l_di" bpmnElement="Flow_0kcrx5l">
<di:waypoint x="188" y="120" />
@ -220,37 +179,31 @@ if isSpace:
<dc:Bounds x="250" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="EndEvent_1qor16n_di" bpmnElement="EndEvent_1qor16n">
<dc:Bounds x="1812" y="102" width="36" height="36" />
<dc:Bounds x="1382" y="102" width="36" height="36" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_0d622qi_di" bpmnElement="Activity_EditPI">
<dc:Bounds x="1130" y="80" width="100" height="80" />
<dc:Bounds x="700" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_1dq6tzx_di" bpmnElement="Activity_0bg56lv">
<dc:Bounds x="400" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Gateway_0qzf1r3_di" bpmnElement="Gateway_CheckForPI" isMarkerVisible="true">
<dc:Bounds x="565" y="95" width="50" height="50" />
<dc:Bounds x="545" y="95" width="50" height="50" />
<bpmndi:BPMNLabel>
<dc:Bounds x="574" y="71" width="31" height="14" />
<dc:Bounds x="554" y="71" width="31" height="14" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_0neg931_di" bpmnElement="Activity_1qwzwyi">
<dc:Bounds x="1130" y="200" width="100" height="80" />
<dc:Bounds x="700" y="200" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_1ktvk27_di" bpmnElement="Activity_0r8pam5">
<dc:Bounds x="1290" y="80" width="100" height="80" />
<dc:Bounds x="860" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Gateway_0jykh6r_di" bpmnElement="Gateway_0jykh6r" isMarkerVisible="true">
<dc:Bounds x="1455" y="95" width="50" height="50" />
<dc:Bounds x="1025" y="95" width="50" height="50" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_1nz85vv_di" bpmnElement="Activity_1bcnjyq">
<dc:Bounds x="1620" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_1z05bvn_di" bpmnElement="Activity_DeterminePI_Department">
<dc:Bounds x="730" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_0uz6yhu_di" bpmnElement="Activity_1aeas6q">
<dc:Bounds x="890" y="80" width="100" height="80" />
<dc:Bounds x="1190" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
</bpmndi:BPMNPlane>
</bpmndi:BPMNDiagram>

206
tests/data/irb_api_personnel/irb_api_personnel.bpmn Normal file
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@ -0,0 +1,206 @@
<?xml version="1.0" encoding="UTF-8"?>
<bpmn:definitions xmlns:bpmn="http://www.omg.org/spec/BPMN/20100524/MODEL" xmlns:bpmndi="http://www.omg.org/spec/BPMN/20100524/DI" xmlns:dc="http://www.omg.org/spec/DD/20100524/DC" xmlns:camunda="http://camunda.org/schema/1.0/bpmn" xmlns:di="http://www.omg.org/spec/DD/20100524/DI" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" id="Definitions_06pyjz2" targetNamespace="http://bpmn.io/schema/bpmn" exporter="Camunda Modeler" exporterVersion="3.7.0">
<bpmn:process id="Process_01143nb" isExecutable="true">
<bpmn:startEvent id="StartEvent_1">
<bpmn:outgoing>Flow_0kcrx5l</bpmn:outgoing>
</bpmn:startEvent>
<bpmn:scriptTask id="ScriptTask_LoadPersonnel" name="Load IRB Personnel">
<bpmn:incoming>Flow_0kcrx5l</bpmn:incoming>
<bpmn:outgoing>Flow_1dcsioh</bpmn:outgoing>
<bpmn:script>investigators = study_info('investigators')</bpmn:script>
</bpmn:scriptTask>
<bpmn:endEvent id="EndEvent_1qor16n">
<bpmn:documentation>## The following information was gathered:
{% if pi|length == 1 %}
### PI: {{ pi.PI.display_name }}
* Edit Acess? {{ pi.edit_access }}
* Send Emails? {{ pi.emails }}
* Experience: {{ pi.experience }}
{% else %}
### No PI in PB
{% endif %}</bpmn:documentation>
<bpmn:incoming>Flow_1n0k4pd</bpmn:incoming>
<bpmn:incoming>Flow_1oqem42</bpmn:incoming>
</bpmn:endEvent>
<bpmn:userTask id="Activity_EditPI" name="Update PI Info" camunda:formKey="PI_AccessEmailsExperience">
<bpmn:documentation>### Please provide supplemental information for:
#### {{ pi.PI.display_name }}
##### Title: {{ pi.PI.title }}
##### Department: {{ pi.PI.department }}
##### Affiliation: {{ pi.PI.affiliation }}</bpmn:documentation>
<bpmn:extensionElements>
<camunda:formData>
<camunda:formField id="pi.edit_access" label="Should the Principal Investigator have full editing access in the system?" type="boolean" defaultValue="true" />
<camunda:formField id="pi.emails" label="Should the Principal Investigator receive automated email notifications?" type="boolean" defaultValue="true" />
<camunda:formField id="pi.experience" label="Investigator&#39;s Experience" type="textarea">
<camunda:properties>
<camunda:property id="rows" value="5" />
</camunda:properties>
</camunda:formField>
</camunda:formData>
<camunda:properties>
<camunda:property name="display_name" value="pi.PI.label" />
</camunda:properties>
</bpmn:extensionElements>
<bpmn:incoming>Flow_147b9li</bpmn:incoming>
<bpmn:outgoing>Flow_1mplloa</bpmn:outgoing>
</bpmn:userTask>
<bpmn:sequenceFlow id="Flow_0kcrx5l" sourceRef="StartEvent_1" targetRef="ScriptTask_LoadPersonnel" />
<bpmn:sequenceFlow id="Flow_1mplloa" sourceRef="Activity_EditPI" targetRef="Activity_0r8pam5" />
<bpmn:sequenceFlow id="Flow_1dcsioh" sourceRef="ScriptTask_LoadPersonnel" targetRef="Activity_0bg56lv" />
<bpmn:sequenceFlow id="Flow_17uqguj" sourceRef="Activity_0bg56lv" targetRef="Gateway_CheckForPI" />
<bpmn:scriptTask id="Activity_0bg56lv" name="Check for PI">
<bpmn:incoming>Flow_1dcsioh</bpmn:incoming>
<bpmn:outgoing>Flow_17uqguj</bpmn:outgoing>
<bpmn:script>pi = {x:investigators[x] for x in investigators.keys() if x[:2] == 'PI'}</bpmn:script>
</bpmn:scriptTask>
<bpmn:exclusiveGateway id="Gateway_CheckForPI" name="PI Cnt" default="Flow_147b9li">
<bpmn:incoming>Flow_17uqguj</bpmn:incoming>
<bpmn:outgoing>Flow_147b9li</bpmn:outgoing>
<bpmn:outgoing>Flow_00prawo</bpmn:outgoing>
</bpmn:exclusiveGateway>
<bpmn:sequenceFlow id="Flow_147b9li" name="1 PI from PB" sourceRef="Gateway_CheckForPI" targetRef="Activity_EditPI" />
<bpmn:sequenceFlow id="Flow_00prawo" name="No PI from PB" sourceRef="Gateway_CheckForPI" targetRef="Activity_1qwzwyi">
<bpmn:conditionExpression xsi:type="bpmn:tFormalExpression">len(pi.keys()) == 0</bpmn:conditionExpression>
</bpmn:sequenceFlow>
<bpmn:manualTask id="Activity_1qwzwyi" name="Show No PI">
<bpmn:documentation>No PI entered in PB</bpmn:documentation>
<bpmn:incoming>Flow_00prawo</bpmn:incoming>
<bpmn:outgoing>Flow_14ti38o</bpmn:outgoing>
</bpmn:manualTask>
<bpmn:sequenceFlow id="Flow_0elbjpd" sourceRef="Activity_0r8pam5" targetRef="Gateway_0jykh6r" />
<bpmn:scriptTask id="Activity_0r8pam5" name="Check for Study Coordinators">
<bpmn:incoming>Flow_1mplloa</bpmn:incoming>
<bpmn:incoming>Flow_14ti38o</bpmn:incoming>
<bpmn:outgoing>Flow_0elbjpd</bpmn:outgoing>
<bpmn:script>scs = {x:investigators[x] for x in investigators.keys() if x[:3] == 'SC_'}</bpmn:script>
</bpmn:scriptTask>
<bpmn:exclusiveGateway id="Gateway_0jykh6r" default="Flow_0xifvai">
<bpmn:incoming>Flow_0elbjpd</bpmn:incoming>
<bpmn:outgoing>Flow_0xifvai</bpmn:outgoing>
<bpmn:outgoing>Flow_1oqem42</bpmn:outgoing>
</bpmn:exclusiveGateway>
<bpmn:sequenceFlow id="Flow_0xifvai" name="1 or more Study Coordinators" sourceRef="Gateway_0jykh6r" targetRef="Activity_1bcnjyq" />
<bpmn:sequenceFlow id="Flow_1n0k4pd" sourceRef="Activity_1bcnjyq" targetRef="EndEvent_1qor16n" />
<bpmn:userTask id="Activity_1bcnjyq" name="Update SC Info" camunda:formKey="SC_AccessEmails">
<bpmn:documentation>### Please provide supplemental information for:
#### {{ sc.display_name }}
##### Title: {{ sc.title }}
##### Department: {{ sc.department }}
##### Affiliation: {{ sc.affiliation }}</bpmn:documentation>
<bpmn:extensionElements>
<camunda:formData>
<camunda:formField id="sc.access" label="Should this Study Coordinator have full editing access in the system?" type="boolean" />
<camunda:formField id="sc.emails" label="Should this Study Coordinator receive automated email notifications?" type="boolean" defaultValue="yes" />
</camunda:formData>
</bpmn:extensionElements>
<bpmn:incoming>Flow_0xifvai</bpmn:incoming>
<bpmn:outgoing>Flow_1n0k4pd</bpmn:outgoing>
<bpmn:multiInstanceLoopCharacteristics camunda:collection="scs" camunda:elementVariable="sc" />
</bpmn:userTask>
<bpmn:sequenceFlow id="Flow_1oqem42" name="No Study Coordinators" sourceRef="Gateway_0jykh6r" targetRef="EndEvent_1qor16n">
<bpmn:conditionExpression xsi:type="bpmn:tFormalExpression">len(scs.keys()) == 0</bpmn:conditionExpression>
</bpmn:sequenceFlow>
<bpmn:sequenceFlow id="Flow_14ti38o" sourceRef="Activity_1qwzwyi" targetRef="Activity_0r8pam5" />
</bpmn:process>
<bpmndi:BPMNDiagram id="BPMNDiagram_1">
<bpmndi:BPMNPlane id="BPMNPlane_1" bpmnElement="Process_01143nb">
<bpmndi:BPMNEdge id="Flow_14ti38o_di" bpmnElement="Flow_14ti38o">
<di:waypoint x="800" y="240" />
<di:waypoint x="910" y="240" />
<di:waypoint x="910" y="160" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1oqem42_di" bpmnElement="Flow_1oqem42">
<di:waypoint x="1050" y="145" />
<di:waypoint x="1050" y="270" />
<di:waypoint x="1400" y="270" />
<di:waypoint x="1400" y="138" />
<bpmndi:BPMNLabel>
<dc:Bounds x="1195" y="236" width="64" height="27" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1n0k4pd_di" bpmnElement="Flow_1n0k4pd">
<di:waypoint x="1290" y="120" />
<di:waypoint x="1382" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_0xifvai_di" bpmnElement="Flow_0xifvai">
<di:waypoint x="1075" y="120" />
<di:waypoint x="1190" y="120" />
<bpmndi:BPMNLabel>
<dc:Bounds x="1080" y="86" width="79" height="27" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_0elbjpd_di" bpmnElement="Flow_0elbjpd">
<di:waypoint x="960" y="120" />
<di:waypoint x="1025" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_00prawo_di" bpmnElement="Flow_00prawo">
<di:waypoint x="570" y="145" />
<di:waypoint x="570" y="240" />
<di:waypoint x="700" y="240" />
<bpmndi:BPMNLabel>
<dc:Bounds x="590" y="222" width="71" height="14" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_147b9li_di" bpmnElement="Flow_147b9li">
<di:waypoint x="595" y="120" />
<di:waypoint x="700" y="120" />
<bpmndi:BPMNLabel>
<dc:Bounds x="608" y="102" width="63" height="14" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_17uqguj_di" bpmnElement="Flow_17uqguj">
<di:waypoint x="500" y="120" />
<di:waypoint x="545" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1dcsioh_di" bpmnElement="Flow_1dcsioh">
<di:waypoint x="350" y="120" />
<di:waypoint x="400" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_1mplloa_di" bpmnElement="Flow_1mplloa">
<di:waypoint x="800" y="120" />
<di:waypoint x="860" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNEdge id="Flow_0kcrx5l_di" bpmnElement="Flow_0kcrx5l">
<di:waypoint x="188" y="120" />
<di:waypoint x="250" y="120" />
</bpmndi:BPMNEdge>
<bpmndi:BPMNShape id="_BPMNShape_StartEvent_2" bpmnElement="StartEvent_1">
<dc:Bounds x="152" y="102" width="36" height="36" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="ScriptTask_0h49cmf_di" bpmnElement="ScriptTask_LoadPersonnel">
<dc:Bounds x="250" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="EndEvent_1qor16n_di" bpmnElement="EndEvent_1qor16n">
<dc:Bounds x="1382" y="102" width="36" height="36" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_0d622qi_di" bpmnElement="Activity_EditPI">
<dc:Bounds x="700" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_1dq6tzx_di" bpmnElement="Activity_0bg56lv">
<dc:Bounds x="400" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Gateway_0qzf1r3_di" bpmnElement="Gateway_CheckForPI" isMarkerVisible="true">
<dc:Bounds x="545" y="95" width="50" height="50" />
<bpmndi:BPMNLabel>
<dc:Bounds x="554" y="71" width="31" height="14" />
</bpmndi:BPMNLabel>
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_0neg931_di" bpmnElement="Activity_1qwzwyi">
<dc:Bounds x="700" y="200" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_1ktvk27_di" bpmnElement="Activity_0r8pam5">
<dc:Bounds x="860" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Gateway_0jykh6r_di" bpmnElement="Gateway_0jykh6r" isMarkerVisible="true">
<dc:Bounds x="1025" y="95" width="50" height="50" />
</bpmndi:BPMNShape>
<bpmndi:BPMNShape id="Activity_1nz85vv_di" bpmnElement="Activity_1bcnjyq">
<dc:Bounds x="1190" y="80" width="100" height="80" />
</bpmndi:BPMNShape>
</bpmndi:BPMNPlane>
</bpmndi:BPMNDiagram>
</bpmn:definitions>

21
tests/workflow/test_workflow_processor_multi_instance.py
View File

@ -38,6 +38,27 @@ class TestWorkflowProcessorMultiInstance(BaseTest):
workflow_model = StudyService._create_workflow_model(study_model, spec_model)
return WorkflowProcessor(workflow_model)
@patch('crc.services.study_service.StudyService.get_investigators')
def test_load_irb_from_db(self, mock_study_service):
# This depends on getting a list of investigators back from the protocol builder.
mock_study_service.return_value = self.mock_investigator_response
self.load_example_data()
workflow_spec_model = self.create_workflow("irb_api_personnel")
study = session.query(StudyModel).first()
processor = WorkflowProcessor(workflow_spec_model)
processor.do_engine_steps()
task_list = processor.get_ready_user_tasks()
processor.complete_task(task_list[0])
processor.do_engine_steps()
nav_list = processor.bpmn_workflow.get_nav_list()
processor.save()
# reload after save
processor = WorkflowProcessor(workflow_spec_model)
nav_list2 = processor.bpmn_workflow.get_nav_list()
self.assertEqual(nav_list,nav_list2)
@patch('crc.services.study_service.StudyService.get_investigators')
def test_create_and_complete_workflow(self, mock_study_service):
# This depends on getting a list of investigators back from the protocol builder.