sartography
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cr-connect-workflow
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adding additional data to the study details returned during validation/shield testing.

This commit is contained in:
Dan Funk 2020-08-12 17:04:59 -04:00
parent 7bfcdd53cd
commit e8067fe34e
3 changed files with 112 additions and 186 deletions
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@ -39,7 +39,7 @@ requests = "*"
sentry-sdk = {extras = ["flask"],version = "==0.14.4"}
sphinx = "*"
swagger-ui-bundle = "*"
spiffworkflow = {editable = true, git = "https://github.com/sartography/SpiffWorkflow.git", ref = "master"}
spiffworkflow = {git = "https://github.com/sartography/SpiffWorkflow.git", ref = "master"}
webtest = "*"
werkzeug = "*"
xlrd = "*"

228
Pipfile.lock generated
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@ -1,7 +1,7 @@
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@ -30,14 +30,6 @@
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@ -58,7 +49,6 @@
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@ -166,7 +141,6 @@
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@ -183,14 +157,6 @@
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@ -247,7 +213,6 @@
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@ -255,7 +220,6 @@
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@ -338,16 +302,8 @@
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@ -376,15 +331,21 @@
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"sha256:7f7283dfe50eac8a8cd9b777de9eb50b1edf7dbb46fc7cc9d9b0050d0c135021",
"sha256:7f9759095b3fc825464a72b1cae95125e610eba3c70f91557754c32a0bf32ea2",
"sha256:8005a4df455569c0d490ddfd9e5a163f21293477fd0ed4ea9effdd723ddd8eaa",
"sha256:86e865f29ad3dc3bb4733e5247220173d90f05ac8d2ad18e9689a220f90de55f",
"sha256:98727050ba70eb8d318ec8a8203531c20119347fc8f281102b097326812742ab",
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"sha256:acfad8ffed96891fe7c583d92717cd8ec0c03b59a954c389fd4e26a5cdeac610",
"sha256:ad15f25abff8220e556d64e2a27c646241b08f00faf1bc02313655696cd3edfa",
"sha256:b679f951f842c38665aa54bea4d7403099131f71fac6d8584f893a731fe1266d",
"sha256:b8c183dc4aa4e95dc5c373eedc3d205c176805835611fcfec5d9050736c695c4",
"sha256:c097a6829967c76526a037ed34500a028f78f0d765c8e3dbd1a7717afd09fb92",
"sha256:c2c76f483d05eddec60a5cd89e92385adef565a4f243b1d9a6abe2f6bd2a7c0a",
"sha256:c388baa3c04272a7c585d3da24030c142353eb26eb531dd2681502e6be7d7a26",
"sha256:cb0f2a711db665b5bf8697b5af3b9884bb1139385c5c12c2e472e4bbee62da99",
"sha256:cbac984d7b36e75b440d1c8ff9d3425d778364a0cbc23f8943383d4decd35d5e",
"sha256:f55adf069be2d655f8d668594fe1be1b84d9dc8106d380a9ada06f34941c33c8",
"sha256:f9084ed3b8997ad4353d124b903f2860a9695b9e080663276d9e58c32e293244",
"sha256:fb7df3504222fcb1fa593f76623abbb54d6019eec15aac5d05cd07ad90ac016c"
],
"version": "==0.13.1"
},
"pytz": {
"hashes": [
"sha256:a494d53b6d39c3c6e44c3bec237336e14305e4f29bbf800b599253057fbb79ed",
@ -873,7 +745,6 @@
"sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259",
"sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==1.15.0"
},
"snowballstemmer": {
@ -888,23 +759,21 @@
"sha256:1634eea42ab371d3d346309b93df7870a88610f0725d47528be902a0d95ecc55",
"sha256:a59dc181727e95d25f781f0eb4fd1825ff45590ec8ff49eadfd7f1a537cc0232"
],
"markers": "python_version >= '3.5'",
"version": "==2.0.1"
},
"sphinx": {
"hashes": [
"sha256:97dbf2e31fc5684bb805104b8ad34434ed70e6c588f6896991b2fdfd2bef8c00",
"sha256:b9daeb9b39aa1ffefc2809b43604109825300300b987a24f45976c001ba1a8fd"
"sha256:cf2d5bc3c6c930ab0a1fbef3ad8a82994b1bf4ae923f8098a05c7e5516f07177",
"sha256:f7db5b76c42c8b5ef31853c2de7178ef378b985d7793829ec071e120dac1d0ca"
],
"index": "pypi",
"version": "==3.1.2"
"version": "==3.2.0"
},
"sphinxcontrib-applehelp": {
"hashes": [
"sha256:806111e5e962be97c29ec4c1e7fe277bfd19e9652fb1a4392105b43e01af885a",
"sha256:a072735ec80e7675e3f432fcae8610ecf509c5f1869d17e2eecff44389cdbc58"
],
"markers": "python_version >= '3.5'",
"version": "==1.0.2"
},
"sphinxcontrib-devhelp": {
@ -912,7 +781,6 @@
"sha256:8165223f9a335cc1af7ffe1ed31d2871f325254c0423bc0c4c7cd1c1e4734a2e",
"sha256:ff7f1afa7b9642e7060379360a67e9c41e8f3121f2ce9164266f61b9f4b338e4"
],
"markers": "python_version >= '3.5'",
"version": "==1.0.2"
},
"sphinxcontrib-htmlhelp": {
@ -920,7 +788,6 @@
"sha256:3c0bc24a2c41e340ac37c85ced6dafc879ab485c095b1d65d2461ac2f7cca86f",
"sha256:e8f5bb7e31b2dbb25b9cc435c8ab7a79787ebf7f906155729338f3156d93659b"
],
"markers": "python_version >= '3.5'",
"version": "==1.0.3"
},
"sphinxcontrib-jsmath": {
@ -928,7 +795,6 @@
"sha256:2ec2eaebfb78f3f2078e73666b1415417a116cc848b72e5172e596c871103178",
"sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"
],
"markers": "python_version >= '3.5'",
"version": "==1.0.1"
},
"sphinxcontrib-qthelp": {
@ -936,7 +802,6 @@
"sha256:4c33767ee058b70dba89a6fc5c1892c0d57a54be67ddd3e7875a18d14cba5a72",
"sha256:bd9fc24bcb748a8d51fd4ecaade681350aa63009a347a8c14e637895444dfab6"
],
"markers": "python_version >= '3.5'",
"version": "==1.0.3"
},
"sphinxcontrib-serializinghtml": {
@ -944,13 +809,11 @@
"sha256:eaa0eccc86e982a9b939b2b82d12cc5d013385ba5eadcc7e4fed23f4405f77bc",
"sha256:f242a81d423f59617a8e5cf16f5d4d74e28ee9a66f9e5b637a18082991db5a9a"
],
"markers": "python_version >= '3.5'",
"version": "==1.1.4"
},
"spiffworkflow": {
"editable": true,
"git": "https://github.com/sartography/SpiffWorkflow.git",
"ref": "7c8d59e7b9a978795bc8d1f354002fdc89540672"
"ref": "7f6f791b7b61cda1b93209a55d89da72787951c9"
},
"sqlalchemy": {
"hashes": [
@ -983,7 +846,6 @@
"sha256:f57be5673e12763dd400fea568608700a63ce1c6bd5bdbc3cc3a2c5fdb045274",
"sha256:fc728ece3d5c772c196fd338a99798e7efac7a04f9cb6416299a3638ee9a94cd"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==1.3.18"
},
"swagger-ui-bundle": {
@ -999,23 +861,13 @@
"sha256:91056c15fa70756691db97756772bb1eb9678fa585d9184f24534b100dc60f4a",
"sha256:e7983572181f5e1522d9c98453462384ee92a0be7fac5f1413a1e35c56cc0461"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4'",
"version": "==1.25.10"
},
"vine": {
"hashes": [
"sha256:133ee6d7a9016f177ddeaf191c1f58421a1dcc6ee9a42c58b34bed40e1d2cd87",
"sha256:ea4947cc56d1fd6f2095c8d543ee25dad966f78692528e68b4fada11ba3f98af"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==1.3.0"
},
"waitress": {
"hashes": [
"sha256:1bb436508a7487ac6cb097ae7a7fe5413aefca610550baf58f0940e51ecfb261",
"sha256:3d633e78149eb83b60a07dfabb35579c29aac2d24bb803c18b26fb2ab1a584db"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
"version": "==1.4.4"
},
"webob": {
@ -1023,7 +875,6 @@
"sha256:a3c89a8e9ba0aeb17382836cdb73c516d0ecf6630ec40ec28288f3ed459ce87b",
"sha256:aa3a917ed752ba3e0b242234b2a373f9c4e2a75d35291dcbe977649bd21fd108"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==1.8.6"
},
"webtest": {
@ -1065,11 +916,18 @@
},
"xlsxwriter": {
"hashes": [
"sha256:3015f707cf237d277cf1b2d7805f409f0387e32bc52f3c76db9f85098980e828",
"sha256:ee3fc2f32890246aba44dd14d777d6b3135e3454f865d8cc669618e20152296b"
"sha256:18385dacdf6327da72e9d41589669d521ec914726bd493fc18e27afb4bb318dc",
"sha256:3ba4655713c8c84b428b529c8e353ac028626ec57f348094da4f66fdc573b0fb"
],
"index": "pypi",
"version": "==1.3.0"
"version": "==1.3.2"
},
"zipp": {
"hashes": [
"sha256:aa36550ff0c0b7ef7fa639055d797116ee891440eac1a56f378e2d3179e0320b",
"sha256:c599e4d75c98f6798c509911d08a22e6c021d074469042177c8c86fb92eefd96"
],
"version": "==3.1.0"
}
},
"develop": {
@ -1078,7 +936,6 @@
"sha256:08a96c641c3a74e44eb59afb61a24f2cb9f4d7188748e76ba4bb5edfa3cb7d1c",
"sha256:f7b7ce16570fe9965acd6d30101a28f62fb4a7f9e926b3bbc9b61f8b04247e72"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==19.3.0"
},
"coverage": {
@ -1121,6 +978,14 @@
"index": "pypi",
"version": "==5.2.1"
},
"importlib-metadata": {
"hashes": [
"sha256:90bb658cdbbf6d1735b6341ce708fc7024a3e14e99ffdc5783edea9f9b077f83",
"sha256:dc15b2969b4ce36305c51eebe62d418ac7791e9a157911d58bfb1f9ccd8e2070"
],
"markers": "python_version < '3.8'",
"version": "==1.7.0"
},
"iniconfig": {
"hashes": [
"sha256:80cf40c597eb564e86346103f609d74efce0f6b4d4f30ec8ce9e2c26411ba437",
@ -1133,7 +998,6 @@
"sha256:68c70cc7167bdf5c7c9d8f6954a7837089c6a36bf565383919bb595efb8a17e5",
"sha256:b78134b2063dd214000685165d81c154522c3ee0a1c0d4d113c80361c234c5a2"
],
"markers": "python_version >= '3.5'",
"version": "==8.4.0"
},
"packaging": {
@ -1141,7 +1005,6 @@
"sha256:4357f74f47b9c12db93624a82154e9b120fa8293699949152b22065d556079f8",
"sha256:998416ba6962ae7fbd6596850b80e17859a5753ba17c32284f67bfff33784181"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==20.4"
},
"pbr": {
@ -1157,7 +1020,6 @@
"sha256:15b2acde666561e1298d71b523007ed7364de07029219b604cf808bfa1c765b0",
"sha256:966c145cd83c96502c3c3868f50408687b38434af77734af1e9ca461a4081d2d"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==0.13.1"
},
"py": {
@ -1165,7 +1027,6 @@
"sha256:366389d1db726cd2fcfc79732e75410e5fe4d31db13692115529d34069a043c2",
"sha256:9ca6883ce56b4e8da7e79ac18787889fa5206c79dcc67fb065376cd2fe03f342"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==1.9.0"
},
"pyparsing": {
@ -1173,7 +1034,6 @@
"sha256:c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1",
"sha256:ef9d7589ef3c200abe66653d3f1ab1033c3c419ae9b9bdb1240a85b024efc88b"
],
"markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==2.4.7"
},
"pytest": {
@ -1189,7 +1049,6 @@
"sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259",
"sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
"version": "==1.15.0"
},
"toml": {
@ -1198,6 +1057,13 @@
"sha256:bda89d5935c2eac546d648028b9901107a595863cb36bae0c73ac804a9b4ce88"
],
"version": "==0.10.1"
},
"zipp": {
"hashes": [
"sha256:aa36550ff0c0b7ef7fa639055d797116ee891440eac1a56f378e2d3179e0320b",
"sha256:c599e4d75c98f6798c509911d08a22e6c021d074469042177c8c86fb92eefd96"
],
"version": "==3.1.0"
}
}
}

68
crc/scripts/study_info.py
View File

@ -241,10 +241,70 @@ Returns information specific to the protocol.
},
"details":
{
"IS_IND": 0,
"IS_IDE": 0,
"IS_MULTI_SITE": 0,
"IS_UVA_PI_MULTI": 0
"DSMB": None,
"DSMB_FREQUENCY": None,
"GCRC_NUMBER": None,
"IBC_NUMBER": None,
"IDE": None,
"IND_1": 1234,
"IND_2": None,
"IND_3": None,
"IRBREVIEWERADMIN": None,
"IS_ADULT_PARTICIPANT": None,
"IS_APPROVED_DEVICE": None,
"IS_AUX": None,
"IS_BIOMEDICAL": None,
"IS_CANCER_PATIENT": None,
"IS_CENTRAL_REG_DB": None,
"IS_CHART_REVIEW": None,
"IS_COMMITTEE_CONFLICT": None,
"IS_CONSENT_WAIVER": None,
"IS_DB": None,
"IS_ELDERLY_POP": None,
"IS_ENGAGED_RESEARCH": None,
"IS_FETUS_POP": None,
"IS_FINANCIAL_CONFLICT": None,
"IS_FOR_CANCER_CENTER": None,
"IS_FUNDING_SOURCE": None,
"IS_GCRC": None,
"IS_GENE_TRANSFER": None,
"IS_GRANT": None,
"IS_HGT": None,
"IS_IBC": None,
"IS_IDE": None,
"IS_IND": None,
"IS_MENTAL_IMPAIRMENT_POP": None,
"IS_MINOR": None,
"IS_MINOR_PARTICIPANT": None,
"IS_MULTI_SITE": None,
"IS_NOT_CONSENT_WAIVER": None,
"IS_NOT_PRC_WAIVER": None,
"IS_OTHER_VULNERABLE_POP": None,
"IS_OUTSIDE_CONTRACT": None,
"IS_PI_INITIATED": None,
"IS_PI_SCHOOL": None,
"IS_PRC": None,
"IS_PRC_DSMP": None,
"IS_PREGNANT_POP": None,
"IS_PRISONERS_POP": None,
"IS_QUALITATIVE": None,
"IS_RADIATION": None,
"IS_REVIEW_BY_CENTRAL_IRB": None,
"IS_SPONSOR": None,
"IS_SPONSOR_MONITORING": None,
"IS_SURROGATE_CONSENT": None,
"IS_TISSUE_BANKING": None,
"IS_UVA_DB": None,
"IS_UVA_IDE": None,
"IS_UVA_IND": None,
"IS_UVA_LOCATION": None,
"IS_UVA_PI_MULTI": None,
"MULTI_SITE_LOCATIONS": None,
"NON_UVA_LOCATION": None,
"OTHER_VULNERABLE_DESC": None,
"PRC_NUMBER": None,
"SPONSORS_PROTOCOL_REVISION_DATE": None,
"UPLOAD_COMPLETE": None
},
"approvals": {
"study_id": 12,