2022-05-19 19:56:03 +00:00
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## Nim-Codex
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2022-04-05 19:12:59 +00:00
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## Copyright (c) 2022 Status Research & Development GmbH
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## Licensed under either of
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## * Apache License, version 2.0, ([LICENSE-APACHE](LICENSE-APACHE))
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## * MIT license ([LICENSE-MIT](LICENSE-MIT))
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## at your option.
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## This file may not be copied, modified, or distributed except according to
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## those terms.
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import pkg/upraises
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push: {.upraises: [].}
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import std/sequtils
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import std/sugar
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2022-04-05 19:12:59 +00:00
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import pkg/chronos
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2023-12-22 12:04:01 +00:00
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import pkg/libp2p/[multicodec, cid, multihash]
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2023-11-14 12:02:17 +00:00
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import pkg/libp2p/protobuf/minprotobuf
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2022-04-05 19:12:59 +00:00
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feat: create logging proxy (#663)
* implement a logging proxy
The logging proxy:
- prevents the need to import chronicles (as well as export except toJson),
- prevents the need to override `writeValue` or use or import nim-json-seralization elsewhere in the codebase, allowing for sole use of utils/json for de/serialization,
- and handles json formatting correctly in chronicles json sinks
* Rename logging -> logutils to avoid ambiguity with common names
* clean up
* add setProperty for JsonRecord, remove nim-json-serialization conflict
* Allow specifying textlines and json format separately
Not specifying a LogFormat will apply the formatting to both textlines and json sinks.
Specifying a LogFormat will apply the formatting to only that sink.
* remove unneeded usages of std/json
We only need to import utils/json instead of std/json
* move serialization from rest/json to utils/json so it can be shared
* fix NoColors ambiguity
Was causing unit tests to fail on Windows.
* Remove nre usage to fix Windows error
Windows was erroring with `could not load: pcre64.dll`. Instead of fixing that error, remove the pcre usage :)
* Add logutils module doc
* Shorten logutils.formatIt for `NBytes`
Both json and textlines formatIt were not needed, and could be combined into one formatIt
* remove debug integration test config
debug output and logformat of json for integration test logs
* Use ## module doc to support docgen
* bump nim-poseidon2 to export fromBytes
Before the changes in this branch, fromBytes was likely being resolved by nim-stew, or other dependency. With the changes in this branch, that dependency was removed and fromBytes could no longer be resolved. By exporting fromBytes from nim-poseidon, the correct resolution is now happening.
* fixes to get compiling after rebasing master
* Add support for Result types being logged using formatIt
2024-01-23 07:35:03 +00:00
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import ../logutils
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2022-04-05 19:12:59 +00:00
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import ../manifest
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2023-11-14 12:02:17 +00:00
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import ../merkletree
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2022-04-05 19:12:59 +00:00
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import ../stores
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2022-05-19 02:29:15 +00:00
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import ../blocktype as bt
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import ../utils
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import ../utils/asynciter
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2024-01-08 22:52:46 +00:00
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import ../indexingstrategy
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2023-11-14 12:02:17 +00:00
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import pkg/stew/byteutils
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import ./backend
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export backend
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logScope:
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2022-05-19 19:56:03 +00:00
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topics = "codex erasure"
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type
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## Encode a manifest into one that is erasure protected.
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##
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## The new manifest has K `blocks` that are encoded into
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## additional M `parity` blocks. The resulting dataset
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## is padded with empty blocks if it doesn't have a square
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## shape.
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##
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## NOTE: The padding blocks could be excluded
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## from transmission, but they aren't for now.
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##
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## The resulting dataset is logically divided into rows
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## where a row is made up of B blocks. There are then,
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## K + M = N rows in total, each of length B blocks. Rows
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## are assumed to be of the same number of (B) blocks.
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##
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## The encoding is systematic and the rows can be
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## read sequentially by any node without decoding.
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##
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## Decoding is possible with any K rows or partial K
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## columns (with up to M blocks missing per column),
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## or any combination there of.
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##
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EncoderProvider* = proc(size, blocks, parity: int): EncoderBackend
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{.raises: [Defect], noSideEffect.}
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DecoderProvider* = proc(size, blocks, parity: int): DecoderBackend
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{.raises: [Defect], noSideEffect.}
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Erasure* = ref object
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encoderProvider*: EncoderProvider
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decoderProvider*: DecoderProvider
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store*: BlockStore
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EncodingParams = object
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ecK: Natural
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ecM: Natural
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rounded: Natural
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steps: Natural
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blocksCount: Natural
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strategy: StrategyType
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func indexToPos(steps, idx, step: int): int {.inline.} =
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## Convert an index to a position in the encoded
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## dataset
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## `idx` - the index to convert
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## `step` - the current step
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## `pos` - the position in the encoded dataset
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##
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(idx - step) div steps
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proc getPendingBlocks(
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self: Erasure,
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manifest: Manifest,
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indicies: seq[int]): AsyncIter[(?!bt.Block, int)] =
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## Get pending blocks iterator
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##
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var
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# request blocks from the store
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pendingBlocks = indicies.map( (i: int) =>
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2023-12-21 06:41:43 +00:00
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self.store.getBlock(
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BlockAddress.init(manifest.treeCid, i)
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).map((r: ?!bt.Block) => (r, i)) # Get the data blocks (first K)
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)
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proc isFinished(): bool = pendingBlocks.len == 0
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proc genNext(): Future[(?!bt.Block, int)] {.async.} =
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let completedFut = await one(pendingBlocks)
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if (let i = pendingBlocks.find(completedFut); i >= 0):
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pendingBlocks.del(i)
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return await completedFut
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else:
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let (_, index) = await completedFut
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raise newException(
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CatchableError,
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"Future for block id not found, tree cid: " & $manifest.treeCid & ", index: " & $index)
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2023-09-25 14:31:10 +00:00
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Iter.new(genNext, isFinished)
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proc prepareEncodingData(
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self: Erasure,
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manifest: Manifest,
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params: EncodingParams,
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step: Natural,
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data: ref seq[seq[byte]],
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cids: ref seq[Cid],
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emptyBlock: seq[byte]): Future[?!Natural] {.async.} =
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## Prepare data for encoding
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##
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let
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strategy = params.strategy.init(
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firstIndex = 0,
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lastIndex = params.rounded - 1,
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iterations = params.steps
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)
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indicies = toSeq(strategy.getIndicies(step))
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pendingBlocksIter = self.getPendingBlocks(manifest, indicies.filterIt(it < manifest.blocksCount))
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var resolved = 0
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for fut in pendingBlocksIter:
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let (blkOrErr, idx) = await fut
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without blk =? blkOrErr, err:
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warn "Failed retreiving a block", treeCid = manifest.treeCid, idx, msg = err.msg
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continue
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let pos = indexToPos(params.steps, idx, step)
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shallowCopy(data[pos], if blk.isEmpty: emptyBlock else: blk.data)
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cids[idx] = blk.cid
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resolved.inc()
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for idx in indicies.filterIt(it >= manifest.blocksCount):
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let pos = indexToPos(params.steps, idx, step)
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trace "Padding with empty block", idx
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shallowCopy(data[pos], emptyBlock)
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without emptyBlockCid =? emptyCid(manifest.version, manifest.hcodec, manifest.codec), err:
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return failure(err)
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cids[idx] = emptyBlockCid
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success(resolved.Natural)
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proc prepareDecodingData(
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self: Erasure,
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encoded: Manifest,
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step: Natural,
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data: ref seq[seq[byte]],
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parityData: ref seq[seq[byte]],
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cids: ref seq[Cid],
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emptyBlock: seq[byte]): Future[?!(Natural, Natural)] {.async.} =
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## Prepare data for decoding
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## `encoded` - the encoded manifest
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## `step` - the current step
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## `data` - the data to be prepared
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## `parityData` - the parityData to be prepared
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## `cids` - cids of prepared data
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## `emptyBlock` - the empty block to be used for padding
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##
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let
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strategy = encoded.protectedStrategy.init(
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firstIndex = 0,
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lastIndex = encoded.blocksCount - 1,
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iterations = encoded.steps
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)
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indicies = toSeq(strategy.getIndicies(step))
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pendingBlocksIter = self.getPendingBlocks(encoded, indicies)
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var
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dataPieces = 0
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parityPieces = 0
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resolved = 0
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for fut in pendingBlocksIter:
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# Continue to receive blocks until we have just enough for decoding
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# or no more blocks can arrive
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if resolved >= encoded.ecK:
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break
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let (blkOrErr, idx) = await fut
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without blk =? blkOrErr, err:
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trace "Failed retreiving a block", idx, treeCid = encoded.treeCid, msg = err.msg
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continue
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2023-11-14 12:02:17 +00:00
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let
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pos = indexToPos(encoded.steps, idx, step)
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logScope:
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cid = blk.cid
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idx = idx
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pos = pos
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step = step
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empty = blk.isEmpty
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cids[idx] = blk.cid
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if idx >= encoded.rounded:
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trace "Retrieved parity block"
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shallowCopy(parityData[pos - encoded.ecK], if blk.isEmpty: emptyBlock else: blk.data)
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parityPieces.inc
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else:
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trace "Retrieved data block"
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shallowCopy(data[pos], if blk.isEmpty: emptyBlock else: blk.data)
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dataPieces.inc
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resolved.inc
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2024-01-11 16:45:23 +00:00
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return success (dataPieces.Natural, parityPieces.Natural)
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2024-01-08 22:52:46 +00:00
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proc init*(
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_: type EncodingParams,
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manifest: Manifest,
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ecK: Natural, ecM: Natural,
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strategy: StrategyType): ?!EncodingParams =
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if ecK > manifest.blocksCount:
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return failure(
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"Unable to encode manifest, not enough blocks, ecK = " &
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$ecK &
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", blocksCount = " &
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$manifest.blocksCount)
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let
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rounded = roundUp(manifest.blocksCount, ecK)
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steps = divUp(manifest.blocksCount, ecK)
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blocksCount = rounded + (steps * ecM)
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2023-09-25 14:31:10 +00:00
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success EncodingParams(
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ecK: ecK,
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ecM: ecM,
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rounded: rounded,
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steps: steps,
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blocksCount: blocksCount,
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strategy: strategy
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)
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2023-09-25 14:31:10 +00:00
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proc encodeData(
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self: Erasure,
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2023-11-14 12:02:17 +00:00
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manifest: Manifest,
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params: EncodingParams
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): Future[?!Manifest] {.async.} =
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2023-09-25 14:31:10 +00:00
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## Encode blocks pointed to by the protected manifest
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##
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## `manifest` - the manifest to encode
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##
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logScope:
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2023-11-14 12:02:17 +00:00
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steps = params.steps
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rounded_blocks = params.rounded
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blocks_count = params.blocksCount
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ecK = params.ecK
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ecM = params.ecM
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2023-09-25 14:31:10 +00:00
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2022-04-05 19:12:59 +00:00
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var
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cids = seq[Cid].new()
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encoder = self.encoderProvider(manifest.blockSize.int, params.ecK, params.ecM)
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emptyBlock = newSeq[byte](manifest.blockSize.int)
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cids[].setLen(params.blocksCount)
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try:
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2023-11-14 12:02:17 +00:00
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for step in 0..<params.steps:
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# TODO: Don't allocate a new seq every time, allocate once and zero out
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2022-04-05 19:12:59 +00:00
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var
|
2023-09-25 14:31:10 +00:00
|
|
|
data = seq[seq[byte]].new() # number of blocks to encode
|
2023-11-14 12:02:17 +00:00
|
|
|
parityData = newSeqWith[seq[byte]](params.ecM, newSeq[byte](manifest.blockSize.int))
|
2022-04-05 19:12:59 +00:00
|
|
|
|
2023-11-14 12:02:17 +00:00
|
|
|
data[].setLen(params.ecK)
|
2022-04-06 00:34:29 +00:00
|
|
|
# TODO: this is a tight blocking loop so we sleep here to allow
|
|
|
|
# other events to be processed, this should be addressed
|
|
|
|
# by threading
|
2022-11-15 15:46:21 +00:00
|
|
|
await sleepAsync(10.millis)
|
2022-04-06 00:34:29 +00:00
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
without resolved =?
|
2023-11-14 12:02:17 +00:00
|
|
|
(await self.prepareEncodingData(manifest, params, step, data, cids, emptyBlock)), err:
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Unable to prepare data", error = err.msg
|
|
|
|
return failure(err)
|
2022-07-28 00:39:17 +00:00
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Erasure coding data", data = data[].len, parity = parityData.len
|
2022-04-05 19:12:59 +00:00
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
if (
|
|
|
|
let res = encoder.encode(data[], parityData);
|
|
|
|
res.isErr):
|
2022-07-28 00:39:17 +00:00
|
|
|
trace "Unable to encode manifest!", error = $res.error
|
2023-11-14 12:02:17 +00:00
|
|
|
return failure($res.error)
|
2022-04-05 19:12:59 +00:00
|
|
|
|
2023-11-14 12:02:17 +00:00
|
|
|
var idx = params.rounded + step
|
|
|
|
for j in 0..<params.ecM:
|
2022-05-19 02:29:15 +00:00
|
|
|
without blk =? bt.Block.new(parityData[j]), error:
|
2022-04-05 19:12:59 +00:00
|
|
|
trace "Unable to create parity block", err = error.msg
|
|
|
|
return failure(error)
|
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Adding parity block", cid = blk.cid, idx
|
2023-11-14 12:02:17 +00:00
|
|
|
cids[idx] = blk.cid
|
2022-07-28 00:39:17 +00:00
|
|
|
if isErr (await self.store.putBlock(blk)):
|
2022-04-05 19:12:59 +00:00
|
|
|
trace "Unable to store block!", cid = blk.cid
|
|
|
|
return failure("Unable to store block!")
|
2023-11-14 12:02:17 +00:00
|
|
|
idx.inc(params.steps)
|
|
|
|
|
2023-12-21 06:41:43 +00:00
|
|
|
without tree =? CodexTree.init(cids[]), err:
|
2023-11-14 12:02:17 +00:00
|
|
|
return failure(err)
|
|
|
|
|
|
|
|
without treeCid =? tree.rootCid, err:
|
|
|
|
return failure(err)
|
|
|
|
|
|
|
|
if err =? (await self.store.putAllProofs(tree)).errorOption:
|
|
|
|
return failure(err)
|
|
|
|
|
|
|
|
let encodedManifest = Manifest.new(
|
|
|
|
manifest = manifest,
|
|
|
|
treeCid = treeCid,
|
|
|
|
datasetSize = (manifest.blockSize.int * params.blocksCount).NBytes,
|
|
|
|
ecK = params.ecK,
|
2024-02-07 20:54:57 +00:00
|
|
|
ecM = params.ecM,
|
|
|
|
strategy = params.strategy
|
2023-11-14 12:02:17 +00:00
|
|
|
)
|
|
|
|
|
2023-12-21 06:41:43 +00:00
|
|
|
trace "Encoded data successfully", treeCid, blocksCount = params.blocksCount
|
2024-02-07 20:54:57 +00:00
|
|
|
success encodedManifest
|
2022-04-05 19:12:59 +00:00
|
|
|
except CancelledError as exc:
|
|
|
|
trace "Erasure coding encoding cancelled"
|
|
|
|
raise exc # cancellation needs to be propagated
|
|
|
|
except CatchableError as exc:
|
|
|
|
trace "Erasure coding encoding error", exc = exc.msg
|
|
|
|
return failure(exc)
|
|
|
|
finally:
|
|
|
|
encoder.release()
|
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
proc encode*(
|
|
|
|
self: Erasure,
|
|
|
|
manifest: Manifest,
|
2024-01-11 16:45:23 +00:00
|
|
|
blocks: Natural,
|
2024-02-07 20:54:57 +00:00
|
|
|
parity: Natural,
|
|
|
|
strategy = SteppedStrategy): Future[?!Manifest] {.async.} =
|
2023-09-25 14:31:10 +00:00
|
|
|
## Encode a manifest into one that is erasure protected.
|
|
|
|
##
|
|
|
|
## `manifest` - the original manifest to be encoded
|
|
|
|
## `blocks` - the number of blocks to be encoded - K
|
|
|
|
## `parity` - the number of parity blocks to generate - M
|
|
|
|
##
|
|
|
|
|
2024-02-07 20:54:57 +00:00
|
|
|
without params =? EncodingParams.init(manifest, blocks.int, parity.int, strategy), err:
|
2023-11-14 12:02:17 +00:00
|
|
|
return failure(err)
|
2023-09-25 14:31:10 +00:00
|
|
|
|
2023-11-14 12:02:17 +00:00
|
|
|
without encodedManifest =? await self.encodeData(manifest, params), err:
|
|
|
|
return failure(err)
|
2023-09-25 14:31:10 +00:00
|
|
|
|
2023-11-14 12:02:17 +00:00
|
|
|
return success encodedManifest
|
2022-04-05 19:12:59 +00:00
|
|
|
|
|
|
|
proc decode*(
|
2024-02-07 20:54:57 +00:00
|
|
|
self: Erasure,
|
|
|
|
encoded: Manifest): Future[?!Manifest] {.async.} =
|
2022-04-05 19:12:59 +00:00
|
|
|
## Decode a protected manifest into it's original
|
|
|
|
## manifest
|
|
|
|
##
|
|
|
|
## `encoded` - the encoded (protected) manifest to
|
|
|
|
## be recovered
|
|
|
|
##
|
|
|
|
|
|
|
|
logScope:
|
|
|
|
steps = encoded.steps
|
|
|
|
rounded_blocks = encoded.rounded
|
2023-11-14 12:02:17 +00:00
|
|
|
new_manifest = encoded.blocksCount
|
2022-04-05 19:12:59 +00:00
|
|
|
|
|
|
|
var
|
2023-11-14 12:02:17 +00:00
|
|
|
cids = seq[Cid].new()
|
2024-01-11 16:45:23 +00:00
|
|
|
recoveredIndices = newSeq[Natural]()
|
2023-07-06 23:23:27 +00:00
|
|
|
decoder = self.decoderProvider(encoded.blockSize.int, encoded.ecK, encoded.ecM)
|
2023-09-25 14:31:10 +00:00
|
|
|
emptyBlock = newSeq[byte](encoded.blockSize.int)
|
2022-04-05 19:12:59 +00:00
|
|
|
|
2023-11-14 12:02:17 +00:00
|
|
|
cids[].setLen(encoded.blocksCount)
|
2022-04-05 19:12:59 +00:00
|
|
|
try:
|
2023-09-25 14:31:10 +00:00
|
|
|
for step in 0..<encoded.steps:
|
2022-04-06 00:34:29 +00:00
|
|
|
# TODO: this is a tight blocking loop so we sleep here to allow
|
|
|
|
# other events to be processed, this should be addressed
|
|
|
|
# by threading
|
|
|
|
await sleepAsync(10.millis)
|
|
|
|
|
2022-04-05 19:12:59 +00:00
|
|
|
var
|
2023-09-25 14:31:10 +00:00
|
|
|
data = seq[seq[byte]].new()
|
|
|
|
parityData = seq[seq[byte]].new()
|
2023-07-06 23:23:27 +00:00
|
|
|
recovered = newSeqWith[seq[byte]](encoded.ecK, newSeq[byte](encoded.blockSize.int))
|
2022-04-05 19:12:59 +00:00
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
data[].setLen(encoded.ecK) # set len to K
|
|
|
|
parityData[].setLen(encoded.ecM) # set len to M
|
2022-04-05 19:12:59 +00:00
|
|
|
|
2023-12-22 12:04:01 +00:00
|
|
|
without (dataPieces, _) =?
|
2023-11-14 12:02:17 +00:00
|
|
|
(await self.prepareDecodingData(encoded, step, data, parityData, cids, emptyBlock)), err:
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Unable to prepare data", error = err.msg
|
|
|
|
return failure(err)
|
2022-04-05 19:12:59 +00:00
|
|
|
|
2023-03-10 07:02:54 +00:00
|
|
|
if dataPieces >= encoded.ecK:
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Retrieved all the required data blocks"
|
2022-04-05 19:12:59 +00:00
|
|
|
continue
|
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Erasure decoding data"
|
2022-04-05 19:12:59 +00:00
|
|
|
if (
|
2023-09-25 14:31:10 +00:00
|
|
|
let err = decoder.decode(data[], parityData[], recovered);
|
2022-04-05 19:12:59 +00:00
|
|
|
err.isErr):
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Unable to decode data!", err = $err.error
|
2022-04-05 19:12:59 +00:00
|
|
|
return failure($err.error)
|
|
|
|
|
2023-03-10 07:02:54 +00:00
|
|
|
for i in 0..<encoded.ecK:
|
2023-11-14 12:02:17 +00:00
|
|
|
let idx = i * encoded.steps + step
|
|
|
|
if data[i].len <= 0 and not cids[idx].isEmpty:
|
2022-05-19 02:29:15 +00:00
|
|
|
without blk =? bt.Block.new(recovered[i]), error:
|
2022-04-05 19:12:59 +00:00
|
|
|
trace "Unable to create block!", exc = error.msg
|
|
|
|
return failure(error)
|
|
|
|
|
2023-09-25 14:31:10 +00:00
|
|
|
trace "Recovered block", cid = blk.cid, index = i
|
2022-07-28 00:39:17 +00:00
|
|
|
if isErr (await self.store.putBlock(blk)):
|
2022-04-05 19:12:59 +00:00
|
|
|
trace "Unable to store block!", cid = blk.cid
|
|
|
|
return failure("Unable to store block!")
|
2023-11-14 12:02:17 +00:00
|
|
|
|
|
|
|
cids[idx] = blk.cid
|
|
|
|
recoveredIndices.add(idx)
|
2022-04-05 19:12:59 +00:00
|
|
|
except CancelledError as exc:
|
|
|
|
trace "Erasure coding decoding cancelled"
|
|
|
|
raise exc # cancellation needs to be propagated
|
|
|
|
except CatchableError as exc:
|
|
|
|
trace "Erasure coding decoding error", exc = exc.msg
|
|
|
|
return failure(exc)
|
|
|
|
finally:
|
|
|
|
decoder.release()
|
|
|
|
|
2023-12-21 06:41:43 +00:00
|
|
|
without tree =? CodexTree.init(cids[0..<encoded.originalBlocksCount]), err:
|
2023-11-14 12:02:17 +00:00
|
|
|
return failure(err)
|
|
|
|
|
|
|
|
without treeCid =? tree.rootCid, err:
|
|
|
|
return failure(err)
|
|
|
|
|
|
|
|
if treeCid != encoded.originalTreeCid:
|
|
|
|
return failure("Original tree root differs from the tree root computed out of recovered data")
|
|
|
|
|
|
|
|
let idxIter = Iter
|
|
|
|
.fromItems(recoveredIndices)
|
2024-01-11 16:45:23 +00:00
|
|
|
.filter((i: Natural) => i < tree.leavesCount)
|
2023-11-14 12:02:17 +00:00
|
|
|
|
|
|
|
if err =? (await self.store.putSomeProofs(tree, idxIter)).errorOption:
|
|
|
|
return failure(err)
|
|
|
|
|
|
|
|
let decoded = Manifest.new(encoded)
|
2022-04-05 19:12:59 +00:00
|
|
|
|
|
|
|
return decoded.success
|
|
|
|
|
|
|
|
proc start*(self: Erasure) {.async.} =
|
|
|
|
return
|
|
|
|
|
|
|
|
proc stop*(self: Erasure) {.async.} =
|
|
|
|
return
|
|
|
|
|
|
|
|
proc new*(
|
2024-02-07 20:54:57 +00:00
|
|
|
T: type Erasure,
|
|
|
|
store: BlockStore,
|
|
|
|
encoderProvider: EncoderProvider,
|
|
|
|
decoderProvider: DecoderProvider): Erasure =
|
2023-06-22 15:11:18 +00:00
|
|
|
## Create a new Erasure instance for encoding and decoding manifests
|
2022-04-05 19:12:59 +00:00
|
|
|
|
|
|
|
Erasure(
|
|
|
|
store: store,
|
|
|
|
encoderProvider: encoderProvider,
|
|
|
|
decoderProvider: decoderProvider)
|