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Author SHA1 Message Date
mike cullerton
d3818debb4 Added API endpoint for the new irb_info data 2021-04-09 12:04:46 -04:00
mike cullerton
4ddf47314d Merge branch 'dev' into irb-pro-api-endpoints-275 2021-04-09 10:16:29 -04:00
mike cullerton
84b3d455c1 Moved the API methods to a separate file. 
Note that I had to move the `connexion_app.add_api()` call so that it happened *after* db.session was defined, so I could import the session into the api.py file
 2021-04-09 10:00:24 -04:00
Dan
fb99357431 don't depend on dockerhub for nothin, ever. 2021-04-09 09:53:56 -04:00
mike cullerton
40f45202df Ticket 275 - adding new API endpoint for IRB Study Info 
models.py
 - Added new IRBInfo model
 - Added relationship to Study table

forms.py
 - Added form to edit the data
 - Added column in Study table for link to edit new info

__init__.py
 - Added route for new form page
 - Added method to update the db
 2021-04-08 17:35:24 -04:00
Dan
bd4bd3e49f Allow deletes even with new model. 2021-04-08 16:11:17 -04:00
Dan Funk
128945d0b3
Merge pull request #49 from sartography/irb-api-endpoints-273 
Irb api endpoints #273
 2021-04-08 12:44:48 -04:00
mike cullerton
2c780c9028 Q_COMPLETE is not a column in the study table anymore. Removed Q_COMPLETE from the API Study component schema 2021-04-06 12:25:21 -04:00
mike cullerton
4e2b79741f Tests were failing because forms were not sending Q_COMPLETE data. 
Added mocked Q_COMPLETE data to `add_study` and `test_add_and_edit_study`.
 2021-04-06 12:23:13 -04:00
Dan Funk
60da05df4e
Merge pull request #46 from sartography/update-study-details-fields-257 
Update study details fields 257
 2021-04-02 18:56:26 -04:00
Dan
3a8a0fba25 Merge remote-tracking branch 'origin/dev' into update-study-details-fields-257 2021-04-02 12:43:53 -04:00
Dan Funk
81b33ca6f5
Merge pull request #44 from sartography/dependabot/pip/urllib3-1.26.3 
Bump urllib3 from 1.26.2 to 1.26.3
 2021-04-02 12:43:06 -04:00
Dan Funk
4180fbd433
Merge branch 'dev' into dependabot/pip/urllib3-1.26.3 2021-04-02 12:42:59 -04:00
Dan Funk
23d4bf4457
Merge pull request #45 from sartography/dependabot/pip/jinja2-2.11.3 
Bump jinja2 from 2.11.2 to 2.11.3
 2021-04-02 12:36:41 -04:00
Dan
c9ddfe6be4 Fixing an error in the API.yml file that started showing up with the pip update. 2021-04-02 12:32:23 -04:00
Dan Funk
cc1b602e34
Merge pull request #43 from sartography/user-lookup-fix 
Two bug fixes:
 2021-04-02 12:20:11 -04:00
mike cullerton
15dc53f957 Removed Q_COMPLETE from the StudySchema fields, because it is no longer a column. It is a relationship now. 2021-04-02 11:48:09 -04:00
mike cullerton
f23e4e307f removed commented line 2021-04-01 14:12:23 -04:00
mike cullerton
74b6dde9b2 Added component schema for IRBStatus 
Modified Q_COMPLETE property definition for study schema
 2021-04-01 14:11:59 -04:00
mike cullerton
c9695cc867 Migration for current DB changes 2021-04-01 12:47:27 -04:00
mike cullerton
b663a4ec38 Added new API endpoint to check IRB Status for study 2021-04-01 12:46:15 -04:00
mike cullerton
8d0382ab5a The Q_COMPLETE form field on the new/edit study page is changing from boolean to option select. 
Also adding API endpoint to check the IRB status

Added check_study method for API endpoint
Added 'No Error' as default for new Q_COMPLETE select form field
Added code to seed the current status to the form
Added code to process the status information from the form and enter into irb_status table
 2021-04-01 12:45:41 -04:00
mike cullerton
762c29f951 The Q_COMPLETE form field on the new/edit study page is changing from boolean to option select. 
Import new IRBStatus model
Change Q_COMPLETE form field to SelectField
 2021-04-01 12:40:59 -04:00
mike cullerton
d9f46de161 The Q_COMPLETE form field on the new/edit study page is changing from boolean to option select. 
Model Changes:
Delete Q_COMPLETE column from study table.
Add Q_COMPLETE to study table as relationship to new IRBStatus table
Add IRBStatus table.
Add IRBStatusSchema for API JSON
 2021-04-01 12:39:09 -04:00
mike cullerton
f4bd576a72 Sample csv file for testing the file upload feature 
Attempt at testing the file upload feature.
Test fails because SQLite doesn't accept the date as a string. NEED TO FIND A SOLUTION FOR THIS
 2021-03-30 11:00:40 -04:00
mike cullerton
a2ddfaf03b Migration script for new db columns 2021-03-30 10:56:49 -04:00
mike cullerton
c260e6a465 Added new fields for study_details 
Changed some field types

Removed 2 unused documents from required documents list
Changed the name of required documents from Required to Documents
 2021-03-30 10:56:23 -04:00
mike cullerton
a1f2b98ecf Added code to process uploaded study_details csv file 
Modified study_details method to accommodate the csv upload
Added imports for csv, TextIOWrapper
Removed unused imports for date, re
 2021-03-30 10:53:56 -04:00
mike cullerton
4834c029d9 Added form to upload study_details csv file 2021-03-30 10:48:36 -04:00
mike cullerton
5371d204e5 Added db.drop_all() to the tearDownClass class. 
Now we always start tests with a new DB

I tried to add some tests for form validation, but ran into a problem with the csrf_token.
The tests couldn't find it.
This is not a problem using the form for real.
It would be nice to figure this out.
 2021-03-25 13:14:17 -04:00
mike cullerton
ab776ea47d Migration for study_details db changes 2021-03-25 13:12:03 -04:00
mike cullerton
9d839bb85c Changed to match real Protocol Builder 
- Removed `Scientific Contact` from Investigator types
- Changed study_details SPONSORS_PROTOCOL_REVISION_DATE data type from integer to date
- Added 8 new fields to study_details
 2021-03-25 13:11:27 -04:00
mike cullerton
eb4ca6fda4 Sorted the fields in the study_details form to match real Protocol Builder 2021-03-25 13:07:42 -04:00
mike cullerton
0ea0b0a233 added form validation for study_details 2021-03-25 13:06:52 -04:00
dependabot[bot]
5c4a8037d4
Bump jinja2 from 2.11.2 to 2.11.3 
Bumps [jinja2](https://github.com/pallets/jinja) from 2.11.2 to 2.11.3.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/master/CHANGES.rst)
- [Commits](https://github.com/pallets/jinja/compare/2.11.2...2.11.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-20 02:41:59 +00:00
dependabot[bot]
5fc5a73957
Bump urllib3 from 1.26.2 to 1.26.3 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.2 to 1.26.3.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.2...1.26.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-19 20:04:15 +00:00
mike cullerton
b6de1b9146 Two bug fixes: 
- changed onclick to onchange for the select tag
 - added BASE_HREF to the redirect url
 2021-02-23 17:52:10 -05:00
Dan Funk
8a009522c2
Merge pull request #41 from sartography/user-lookup-fix 
fix for user lookup stuff.
 2021-02-23 14:41:33 -05:00
mike cullerton
467e6200be fix for user lookup stuff. 
{{ base_href }} needed quotes around it.
Fixed my test for LDAP search so it doesn't have localhost hardcoded :(
 2021-02-23 14:01:19 -05:00
Dan Funk
d8074ad21c
Merge pull request #39 from sartography/pb-current-user-studies-only-173 
Pb current user studies only 173
 2021-02-23 11:02:34 -05:00
Dan Funk
e24c67f417
Merge branch 'dev' into pb-current-user-studies-only-173 2021-02-23 11:02:22 -05:00
mike cullerton
93b87f806f Ticket 209 
Alter Study table so that TITLE can be longer than 80 characters
 2021-02-22 12:36:10 -05:00
mike cullerton
9b8fd0af81 Test for some redirects we perform for the new code. 2021-02-19 10:55:44 -05:00
mike cullerton
81457c2b7c We can now limit the list of studies to a particular user. 
Created a new route /user_studies in __init__.py that takes a uva_id.
Pulled out some dupllcate code into a new method; render_study_template

In index.html, added a pulldown to select the user. I pull the list of users from the studies so we only show users that have studies.
Added a script to process the selection.
 2021-02-19 10:55:21 -05:00
mike cullerton
60bd0f22ef Fix for LDAP lookup issue where we had the wrong url on testing. 2021-02-19 10:50:13 -05:00
mike cullerton
85bb0bf37c Merge branch 'dev' of https://github.com/sartography/protocol-builder-mock into dev 2021-02-17 10:50:33 -05:00
mike cullerton
f0803990e9 fixed url for ldap lookup. Had hardcoded localhost 2021-02-17 10:49:58 -05:00
Dan
3364619267 Removing deploy step from Travis, as we are moving to Quay.io 
for this process.
Dropping the deloy.sh as it is no longer in use.
Updating the docker file to remove denendency on cr-connect-python-base
 2021-02-11 16:07:28 -05:00
Dan
ccdc878bf1 Merge branch 'pb-mock-ldap-search-101' into dev 2021-01-21 12:26:11 -05:00
Dan
6d5f25ee53 Allow overriding the ldap url using the environment. 2021-01-21 12:25:01 -05:00