mirror of
https://github.com/sartography/protocol-builder-mock.git
synced 2025-01-12 00:34:44 +00:00
merging in dev.
This commit is contained in:
Dan
commit
2d46f96778
5
.github/workflows/constraints.txt
vendored
Normal file
5
.github/workflows/constraints.txt
vendored
Normal file
@ -0,0 +1,5 @@
|
||||
pip==22.0.4
|
||||
nox==2022.1.7
|
||||
nox-poetry==0.9.0
|
||||
poetry==1.1.13
|
||||
virtualenv==20.14.1
|
||||
67
.github/workflows/create-docker-action.yml
vendored
67
.github/workflows/create-docker-action.yml
vendored
@ -2,15 +2,76 @@ name: Create and publish a Docker image
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: ['master']
|
||||
branches: ['main', 'chore/*', 'feature/*', 'bug/*']
|
||||
|
||||
env:
|
||||
REGISTRY: ghcr.io
|
||||
IMAGE_NAME: ${{ github.repository }}
|
||||
|
||||
SQLALCHEMY_DATABASE_URI: "postgresql://postgres:postgres@localhost:5432/pb_test"
|
||||
PGPASSWORD: postgres
|
||||
jobs:
|
||||
build-and-push-image:
|
||||
run_tests:
|
||||
runs-on: ubuntu-latest
|
||||
services:
|
||||
postgres:
|
||||
image: postgres
|
||||
env:
|
||||
POSTGRES_PASSWORD: postgres
|
||||
options: >-
|
||||
--health-cmd pg_isready
|
||||
--health-interval 10s
|
||||
--health-timeout 5s
|
||||
--health-retries 5
|
||||
ports:
|
||||
- 5432:5432
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v2
|
||||
- uses: browser-actions/setup-chrome@latest
|
||||
with:
|
||||
chrome-version: stable
|
||||
- run: python -V
|
||||
- uses: actions/setup-python@v4
|
||||
with:
|
||||
python-version: '3.9'
|
||||
|
||||
- name: Setup Database
|
||||
run: psql -h localhost -c 'create database pb_test;' -U postgres
|
||||
|
||||
- name: Upgrade pip
|
||||
run: |
|
||||
pip install --constraint=.github/workflows/constraints.txt pip
|
||||
pip --version
|
||||
python -V
|
||||
|
||||
- name: Upgrade pip in virtual environments
|
||||
shell: python
|
||||
run: |
|
||||
import os
|
||||
import pip
|
||||
|
||||
with open(os.environ["GITHUB_ENV"], mode="a") as io:
|
||||
print(f"VIRTUALENV_PIP={pip.__version__}", file=io)
|
||||
|
||||
- name: Install Poetry
|
||||
run: |
|
||||
pip install --constraint=.github/workflows/constraints.txt poetry
|
||||
poetry --version
|
||||
poetry install
|
||||
poetry env use 3.9
|
||||
python -V
|
||||
|
||||
|
||||
- name: Run the tests
|
||||
run: |
|
||||
ls -a
|
||||
poetry run pytest
|
||||
|
||||
build-and-push-image:
|
||||
needs:
|
||||
- run_tests
|
||||
runs-on: ubuntu-latest
|
||||
if: github.ref == 'refs/heads/main'
|
||||
permissions:
|
||||
contents: read
|
||||
packages: write
|
||||
|
||||
1
.tool-versions
Normal file
1
.tool-versions
Normal file
@ -0,0 +1 @@
|
||||
python 3.9.12
|
||||
38
.travis.yml
38
.travis.yml
@ -1,38 +0,0 @@
|
||||
language: python
|
||||
|
||||
python:
|
||||
- "3.8"
|
||||
|
||||
services:
|
||||
- postgresql
|
||||
- docker
|
||||
|
||||
addons:
|
||||
chrome: stable
|
||||
sonarcloud:
|
||||
organization: "sartography"
|
||||
|
||||
before_install:
|
||||
- psql -c 'create database pb_test;' -U postgres
|
||||
|
||||
install:
|
||||
- pipenv install --dev
|
||||
|
||||
env:
|
||||
global:
|
||||
- TESTING=true
|
||||
- SQLALCHEMY_DATABASE_URI="postgresql://postgres:@localhost:5432/pb_test"
|
||||
|
||||
script:
|
||||
- pipenv run coverage run -m pytest
|
||||
- pipenv run coverage xml -i
|
||||
|
||||
after_success:
|
||||
- sonar-scanner
|
||||
|
||||
notifications:
|
||||
email:
|
||||
on_success: change
|
||||
on_failure: always
|
||||
recipients:
|
||||
- dan@sartography.com
|
||||
16
Dockerfile
16
Dockerfile
@ -1,6 +1,6 @@
|
||||
FROM quay.io/sartography/python:3.8
|
||||
FROM ghcr.io/sartography/python:3.9
|
||||
|
||||
RUN pip install pipenv
|
||||
RUN pip install poetry
|
||||
RUN useradd _gunicorn --no-create-home --user-group
|
||||
|
||||
RUN apt-get update && \
|
||||
@ -10,9 +10,8 @@ RUN apt-get update && \
|
||||
gunicorn3 postgresql-client
|
||||
|
||||
WORKDIR /app
|
||||
COPY Pipfile Pipfile.lock /app/
|
||||
RUN cd /app && pipenv lock --keep-outdated --requirements > requirements.txt
|
||||
RUN pip install -r /app/requirements.txt
|
||||
COPY pyproject.toml poetry.lock /app/
|
||||
RUN poetry install
|
||||
|
||||
RUN set -xe \
|
||||
&& apt-get remove -y gcc python3-dev libssl-dev \
|
||||
@ -21,4 +20,9 @@ RUN set -xe \
|
||||
&& rm -rf /var/lib/apt/lists/*
|
||||
|
||||
COPY . /app/
|
||||
WORKDIR /app
|
||||
|
||||
# run poetry install again AFTER copying the app into the image
|
||||
# otherwise it does not know what the main app module is
|
||||
RUN poetry install
|
||||
|
||||
CMD ./bin/boot_server_in_docker
|
||||
33
Pipfile
33
Pipfile
@ -1,33 +0,0 @@
|
||||
[[source]]
|
||||
name = "pypi"
|
||||
url = "https://pypi.org/simple"
|
||||
verify_ssl = true
|
||||
|
||||
[dev-packages]
|
||||
pbr = "*"
|
||||
coverage = "*"
|
||||
pytest = "*"
|
||||
|
||||
[packages]
|
||||
flask = "*"
|
||||
connexion = {extras = ["swagger-ui"],version = "*"}
|
||||
gevent = "*"
|
||||
flask-wtf = "*"
|
||||
sqlalchemy = "*"
|
||||
flask-sqlalchemy = "*"
|
||||
flask-assets = "*"
|
||||
flask-table = "*"
|
||||
flask-migrate = "*"
|
||||
flask-marshmallow = "*"
|
||||
ldap3 = "*"
|
||||
ma = "*"
|
||||
marshmallow-sqlalchemy = "*"
|
||||
wtforms-alchemy = "*"
|
||||
psycopg2-binary = "*"
|
||||
pyscss = "*"
|
||||
gunicorn = "*"
|
||||
werkzeug = "*"
|
||||
flask-cors = "*"
|
||||
|
||||
[requires]
|
||||
python_version = "3.8"
|
||||
862
Pipfile.lock
generated
862
Pipfile.lock
generated
@ -1,862 +0,0 @@
|
||||
{
|
||||
"_meta": {
|
||||
"hash": {
|
||||
"sha256": "d8b2217c0bfc71926abef1f4b939b674834ce33b877e882c82a8b8d163a31821"
|
||||
},
|
||||
"pipfile-spec": 6,
|
||||
"requires": {
|
||||
"python_version": "3.8"
|
||||
},
|
||||
"sources": [
|
||||
{
|
||||
"name": "pypi",
|
||||
"url": "https://pypi.org/simple",
|
||||
"verify_ssl": true
|
||||
}
|
||||
]
|
||||
},
|
||||
"default": {
|
||||
"alembic": {
|
||||
"hashes": [
|
||||
"sha256:a21fedebb3fb8f6bbbba51a11114f08c78709377051384c9c5ead5705ee93a51",
|
||||
"sha256:e78be5b919f5bb184e3e0e2dd1ca986f2362e29a2bc933c446fe89f39dbe4e9c"
|
||||
],
|
||||
"version": "==1.6.5"
|
||||
},
|
||||
"attrs": {
|
||||
"hashes": [
|
||||
"sha256:149e90d6d8ac20db7a955ad60cf0e6881a3f20d37096140088356da6c716b0b1",
|
||||
"sha256:ef6aaac3ca6cd92904cdd0d83f629a15f18053ec84e6432106f7a4d04ae4f5fb"
|
||||
],
|
||||
"version": "==21.2.0"
|
||||
},
|
||||
"babel": {
|
||||
"hashes": [
|
||||
"sha256:ab49e12b91d937cd11f0b67cb259a57ab4ad2b59ac7a3b41d6c06c0ac5b0def9",
|
||||
"sha256:bc0c176f9f6a994582230df350aa6e05ba2ebe4b3ac317eab29d9be5d2768da0"
|
||||
],
|
||||
"version": "==2.9.1"
|
||||
},
|
||||
"certifi": {
|
||||
"hashes": [
|
||||
"sha256:2bbf76fd432960138b3ef6dda3dde0544f27cbf8546c458e60baf371917ba9ee",
|
||||
"sha256:50b1e4f8446b06f41be7dd6338db18e0990601dce795c2b1686458aa7e8fa7d8"
|
||||
],
|
||||
"version": "==2021.5.30"
|
||||
},
|
||||
"chardet": {
|
||||
"hashes": [
|
||||
"sha256:0d6f53a15db4120f2b08c94f11e7d93d2c911ee118b6b30a04ec3ee8310179fa",
|
||||
"sha256:f864054d66fd9118f2e67044ac8981a54775ec5b67aed0441892edb553d21da5"
|
||||
],
|
||||
"version": "==4.0.0"
|
||||
},
|
||||
"click": {
|
||||
"hashes": [
|
||||
"sha256:8c04c11192119b1ef78ea049e0a6f0463e4c48ef00a30160c704337586f3ad7a",
|
||||
"sha256:fba402a4a47334742d782209a7c79bc448911afe1149d07bdabdf480b3e2f4b6"
|
||||
],
|
||||
"version": "==8.0.1"
|
||||
},
|
||||
"clickclick": {
|
||||
"hashes": [
|
||||
"sha256:4efb13e62353e34c5eef7ed6582c4920b418d7dedc86d819e22ee089ba01802c",
|
||||
"sha256:c8f33e6d9ec83f68416dd2136a7950125bd256ec39ccc9a85c6e280a16be2bb5"
|
||||
],
|
||||
"version": "==20.10.2"
|
||||
},
|
||||
"connexion": {
|
||||
"extras": [
|
||||
"swagger-ui"
|
||||
],
|
||||
"hashes": [
|
||||
"sha256:1ccfac57d4bb7adf4295ba6f5e48f5a1f66057df6a0713417766c9b5235182ee",
|
||||
"sha256:5439e9659a89c4380d93a07acfbf3380d70be4130574de8881e5f0dfec7ad0e2"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==2.7.0"
|
||||
},
|
||||
"decorator": {
|
||||
"hashes": [
|
||||
"sha256:6e5c199c16f7a9f0e3a61a4a54b3d27e7dad0dbdde92b944426cb20914376323",
|
||||
"sha256:72ecfba4320a893c53f9706bebb2d55c270c1e51a28789361aa93e4a21319ed5"
|
||||
],
|
||||
"version": "==5.0.9"
|
||||
},
|
||||
"dnspython": {
|
||||
"hashes": [
|
||||
"sha256:95d12f6ef0317118d2a1a6fc49aac65ffec7eb8087474158f42f26a639135216",
|
||||
"sha256:e4a87f0b573201a0f3727fa18a516b055fd1107e0e5477cded4a2de497df1dd4"
|
||||
],
|
||||
"version": "==2.1.0"
|
||||
},
|
||||
"email-validator": {
|
||||
"hashes": [
|
||||
"sha256:094b1d1c60d790649989d38d34f69e1ef07792366277a2cf88684d03495d018f",
|
||||
"sha256:1a13bd6050d1db4475f13e444e169b6fe872434922d38968c67cea9568cce2f0"
|
||||
],
|
||||
"version": "==1.1.2"
|
||||
},
|
||||
"flask": {
|
||||
"hashes": [
|
||||
"sha256:4efa1ae2d7c9865af48986de8aeb8504bf32c7f3d6fdc9353d34b21f4b127060",
|
||||
"sha256:8a4fdd8936eba2512e9c85df320a37e694c93945b33ef33c89946a340a238557"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==1.1.2"
|
||||
},
|
||||
"flask-assets": {
|
||||
"hashes": [
|
||||
"sha256:1dfdea35e40744d46aada72831f7613d67bf38e8b20ccaaa9e91fdc37aa3b8c2",
|
||||
"sha256:2845bd3b479be9db8556801e7ebc2746ce2d9edb4e7b64a1c786ecbfc1e5867b"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==2.0"
|
||||
},
|
||||
"flask-babel": {
|
||||
"hashes": [
|
||||
"sha256:e6820a052a8d344e178cdd36dd4bb8aea09b4bda3d5f9fa9f008df2c7f2f5468",
|
||||
"sha256:f9faf45cdb2e1a32ea2ec14403587d4295108f35017a7821a2b1acb8cfd9257d"
|
||||
],
|
||||
"version": "==2.0.0"
|
||||
},
|
||||
"flask-cors": {
|
||||
"hashes": [
|
||||
"sha256:6bcfc100288c5d1bcb1dbb854babd59beee622ffd321e444b05f24d6d58466b8",
|
||||
"sha256:cee4480aaee421ed029eaa788f4049e3e26d15b5affb6a880dade6bafad38324"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==3.0.9"
|
||||
},
|
||||
"flask-marshmallow": {
|
||||
"hashes": [
|
||||
"sha256:2adcd782b5a4a6c5ae3c96701f320d8ca6997995a52b2661093c56cc3ed24754",
|
||||
"sha256:bd01a6372cbe50e36f205cfff0fc5dab0b7b662c4c8b2c4fc06a3151b2950950"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==0.14.0"
|
||||
},
|
||||
"flask-migrate": {
|
||||
"hashes": [
|
||||
"sha256:4dc4a5cce8cbbb06b8dc963fd86cf8136bd7d875aabe2d840302ea739b243732",
|
||||
"sha256:a69d508c2e09d289f6e55a417b3b8c7bfe70e640f53d2d9deb0d056a384f37ee"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==2.5.3"
|
||||
},
|
||||
"flask-sqlalchemy": {
|
||||
"hashes": [
|
||||
"sha256:05b31d2034dd3f2a685cbbae4cfc4ed906b2a733cff7964ada450fd5e462b84e",
|
||||
"sha256:bfc7150eaf809b1c283879302f04c42791136060c6eeb12c0c6674fb1291fae5"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==2.4.4"
|
||||
},
|
||||
"flask-table": {
|
||||
"hashes": [
|
||||
"sha256:320e5756cd7252e902e03b6cd1087f2c7ebc31364341b482f41f30074d10a770"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==0.5.0"
|
||||
},
|
||||
"flask-wtf": {
|
||||
"hashes": [
|
||||
"sha256:57b3faf6fe5d6168bda0c36b0df1d05770f8e205e18332d0376ddb954d17aef2",
|
||||
"sha256:d417e3a0008b5ba583da1763e4db0f55a1269d9dd91dcc3eb3c026d3c5dbd720"
|
||||
],
|
||||
"index": "pypi",
|
||||
"version": "==0.14.3"
|
||||
},
|
||||
"gevent": {
|
||||
"hashes": [
|
||||
"sha256:0f9fa230c5878704b9e286ad5038bac3b70d293bf10e9efa8b2ae1d7d80e7e08",
|
||||
"sha256:19bd3fe60dec45fe6420b7772496950215f1b36701905876ba1644b6b2064163",
|
||||
"sha256:2d05f38a5ef1ebb7ceb692897674b11ba603914524765b989c65c020c7b08360",
|
||||
"sha256:4b0a5626c4e534d184cdf00d66f06de3885beafaaa5f7b98d47186ea175629a1",
|
||||
"sha256:4baecba0fd614e14dc1f3f8c35616cb248cdb893de576150ed1fc7fc66b8ba3d",
|
||||
"sha256:60799fd7dcbb622f8435eb12436d48a8d27f8e7b3d23631e32ccc04ddd2097c2",
|
||||
"sha256:69ddc1767a02f68e71d5e0d3215aa4d28872187715627f71ff0eadd7b7a5e7f4",
|
||||
"sha256:7a808c63f065a303bbbe87c5c0754e06abb1e23e18752f418dce1eb3189cb43d",
|
||||
"sha256:81e38ed46e21e0b00b930efce1a1ff46c7722ad83d84052f71a757f23cbed1c0",
|
||||
"sha256:895c76a89907d9d37fdfaf5321cb0fff0cba396f003bedb4f5fc13836da6f250",
|
||||
"sha256:89c583744f91052ae987356660f5ed0b8fc59a1230b051d6ccc10d37a155fe01",
|
||||
"sha256:99b68765767bb3e2244a66b012883899a6f17c23b6dc1cd80b793df341e15f08",
|
||||
"sha256:9d001fc899db6e140110ae7484e58cd74b0dfa5cee021a0347f00bb441ac78bd",
|
||||
"sha256:b57586ad3fedf13d351d2559b70d6fe593c50400315d52bb3c072285da60fa37",
|
||||
"sha256:ba244028225ff8d3a58f344fcd16ab05b0e3642b34d81f51f7fa3c70761f6c34",
|
||||
"sha256:bf946a99e364ebcc95b82c794d5d1a67f13115adbefab7b9e12791f13184cfd5",
|
||||
"sha256:c3706a620e167c4bd007f16f113928324c4e07a7bae11d6d18d65f82abcd7a58",
|
||||
"sha256:c570a2e3100f758a5c2f9b993ecf870ee784390e44e1a292c361d6b32fb3ad4c",
|
||||
"sha256:caec00914e8f21b2c77a29bbc2ef3abfeadf7515656e5451dfb14c2064733998",
|
||||
"sha256:e233ae153b586b61e492806d4cd1be2217de7441922c02053b67de14800bce96",
|
||||
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|
||||
20
README.md
20
README.md
@ -5,7 +5,7 @@
|
||||
## Requirements
|
||||
* Python 3
|
||||
* pip (for python 3)
|
||||
* pipenv (just run pip install pipenv)
|
||||
* poetry (just run pip install poetry)
|
||||
|
||||
## Database Setup
|
||||
The database for the CR Connect project will create an empty database for protocol builder as well.
|
||||
@ -32,21 +32,5 @@ Finally, you will need to connect to the protocol builder mock ui in a web brows
|
||||
And use this to connect to create a new study. Be sure the study is owned by the person you are logging in
|
||||
to on CR-Connect. For must development environments this will be dhf8r.
|
||||
|
||||
|
||||
## For future reference, these are the steps Sartography is taking to set up Mock Services:
|
||||
|
||||
1. mdkir project
|
||||
1. cd project
|
||||
1. pipenv install
|
||||
1. pipenv install flask
|
||||
1. pipenv install connexion
|
||||
1. place your swagger/openapi file in the root directory
|
||||
1. add methods to return example data in the app.py file.
|
||||
|
||||
## Deploying to staging
|
||||
We don't have a travis / test environment set up for this yet, no tests
|
||||
but you can build and publish it with:
|
||||
```bash
|
||||
docker image build -t sartography/protocol-builder-mock:latest .
|
||||
docker push sartography/protocol-builder-mock:latest
|
||||
```
|
||||
Builds happen automatically when pushed to the main branch.
|
||||
|
||||
@ -17,7 +17,7 @@ APPLICATION_ROOT = re.sub(r'//', '/', '/%s/' % environ.get('APPLICATION_ROOT', d
|
||||
|
||||
DB_HOST = environ.get('DB_HOST', default="localhost")
|
||||
DB_PORT = environ.get('DB_PORT', default="5432")
|
||||
DB_NAME = environ.get('DB_NAME', default="pb")
|
||||
DB_NAME = environ.get('DB_NAME', default="pb2")
|
||||
DB_USER = environ.get('DB_USER', default="crc_user")
|
||||
DB_PASSWORD = environ.get('DB_PASSWORD', default="crc_pass")
|
||||
SQLALCHEMY_DATABASE_URI = environ.get(
|
||||
|
||||
@ -1,30 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# run migrations
|
||||
export FLASK_APP=/app/pb/__init__.py
|
||||
|
||||
if [ "$DOWNGRADE_DB" = "true" ]; then
|
||||
echo 'Downgrading database...'
|
||||
pipenv run flask db downgrade
|
||||
fi
|
||||
|
||||
if [ "$UPGRADE_DB" = "true" ]; then
|
||||
echo 'Upgrading database...'
|
||||
pipenv run flask db upgrade
|
||||
fi
|
||||
|
||||
if [ "$RESET_DB" = "true" ]; then
|
||||
echo 'Clearing database and loading example data...'
|
||||
pipenv run flask load-example-data
|
||||
fi
|
||||
|
||||
if [ "$LOAD_EXAMPLE_SPONSORS" = "true" ]; then
|
||||
echo 'Loading example data...'
|
||||
pipenv run flask load-example-sponsors
|
||||
fi
|
||||
|
||||
if [ "$APPLICATION_ROOT" = "/" ]; then
|
||||
pipenv run gunicorn --bind 0.0.0.0:$PORT0 wsgi:app
|
||||
else
|
||||
pipenv run gunicorn -e SCRIPT_NAME="$APPLICATION_ROOT" --bind 0.0.0.0:$PORT0 wsgi:app
|
||||
fi
|
||||
@ -49,20 +49,6 @@ app.static_url_path = app.config['APPLICATION_ROOT'] + 'static'
|
||||
print('app.static_folder', app.static_folder)
|
||||
print('app.static_url_path', app.static_url_path)
|
||||
|
||||
# remove old static map
|
||||
url_map = app.url_map
|
||||
try:
|
||||
for rule in url_map.iter_rules('static'):
|
||||
url_map._rules.remove(rule)
|
||||
except ValueError:
|
||||
# no static view was created yet
|
||||
pass
|
||||
|
||||
# register new; the same view function is used
|
||||
app.add_url_rule(
|
||||
app.static_url_path + '/<path:filename>',
|
||||
endpoint='static', view_func=app.send_static_file)
|
||||
|
||||
assets = Environment(app)
|
||||
assets.init_app(app)
|
||||
assets.url = app.static_url_path
|
||||
|
||||
@ -1,7 +1,8 @@
|
||||
from flask_table import Table, Col, LinkCol, BoolCol, DatetimeCol, NestedTableCol
|
||||
from flask_wtf import FlaskForm
|
||||
from wtforms import SelectMultipleField, StringField, BooleanField, SelectField, validators, HiddenField, DateField, IntegerField
|
||||
from wtforms.widgets.html5 import DateInput
|
||||
from wtforms.widgets import DateInput
|
||||
from wtforms_alchemy import ModelForm
|
||||
from wtforms.validators import Optional
|
||||
|
||||
from pb.models import RequiredDocument, Investigator, IRBStatus, IRBInfoEvent, IRBInfoStatus
|
||||
|
||||
1657
poetry.lock
generated
Normal file
1657
poetry.lock
generated
Normal file
File diff suppressed because it is too large
Load Diff
36
pyproject.toml
Normal file
36
pyproject.toml
Normal file
@ -0,0 +1,36 @@
|
||||
[tool.poetry]
|
||||
name = "protocol-builder-mock"
|
||||
version = "0.1.0"
|
||||
description = "Mock of the Protocol Builder at UVA so we can test."
|
||||
authors = ["Dan <dan@sartography.com>"]
|
||||
|
||||
[tool.poetry.dependencies]
|
||||
python = "^3.9"
|
||||
flask = "2.1.*"
|
||||
connexion = {extras = ["swagger-ui"], version = "2.*.*"}
|
||||
gevent = "21.*.*"
|
||||
flask-wtf = "1.*.*"
|
||||
sqlalchemy = "1.*.*"
|
||||
flask-sqlalchemy = "2.*.*"
|
||||
flask-assets = "2.*.*"
|
||||
flask-table = "0.*.*"
|
||||
flask-migrate = "3.*.*"
|
||||
flask-marshmallow = "0.*.*"
|
||||
ldap3 = "2.*.*"
|
||||
ma = "1.*.*"
|
||||
marshmallow-sqlalchemy = "0.*.*"
|
||||
wtforms-alchemy = "0.*.*"
|
||||
psycopg2-binary = "2.9.*"
|
||||
pyscss = "1.*.*"
|
||||
gunicorn = "20.*.*"
|
||||
werkzeug = "2.1.*"
|
||||
flask-cors = "3.*.*"
|
||||
|
||||
[tool.poetry.dev-dependencies]
|
||||
pbr = "5.*.*"
|
||||
coverage = "6.*.*"
|
||||
pytest = "7.*.*"
|
||||
|
||||
[build-system]
|
||||
requires = ["poetry-core>=1.0.0"]
|
||||
build-backend = "poetry.core.masonry.api"
|
||||
7
sonar-project.properties
Normal file
7
sonar-project.properties
Normal file
@ -0,0 +1,7 @@
|
||||
sonar.organization=sartography
|
||||
sonar.projectKey=sartography_protocol-builder-mock
|
||||
sonar.host.url=https://sonarcloud.io
|
||||
sonar.exclusions=docs/**,config/**,instance/**,migrations/**,postgres/**,readme_images/**,schema/**,templates/**
|
||||
sonar.sources=pb
|
||||
sonar.test.inclusions=tests
|
||||
sonar.python.coverage.reportPaths=coverage.xml
|
||||
@ -156,7 +156,16 @@ class TestSanity(unittest.TestCase):
|
||||
status_id ='2'
|
||||
status_string = f"('{status_id}', '{status}')"
|
||||
|
||||
self.app.post(f'/irb_info/{study.STUDYID}', data={'UVA_STUDY_TRACKING': tracking_string, 'IRBEVENT': event_string, 'IRB_STATUS': status_string, 'IRB_REVIEW_TYPE': 'Expedited', 'IRB_ONLINE_STATUS': 'Downloaded'})
|
||||
self.app.post(f'/irb_info/{study.STUDYID}',
|
||||
data={'UVA_STUDY_TRACKING': tracking_string,
|
||||
'IRBEVENT': event_string,
|
||||
'IRB_STATUS': status_string,
|
||||
'IRB_REVIEW_TYPE': 'Expedited',
|
||||
'IRB_ONLINE_STATUS': 'Downloaded',
|
||||
'IRB_ADMINISTRATIVE_REVIEWER': 'DanTheMan',
|
||||
'IRB_OF_RECORD': '',
|
||||
'STUDYIRBREVIEWERADMIN':''})
|
||||
|
||||
count = IRBInfo.query.filter(IRBInfo.SS_STUDY_ID == study.STUDYID).count()
|
||||
self.assertGreater(count, 0)
|
||||
|
||||
|
||||
Loading…
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Reference in New Issue
Block a user