From 32a458ed1c84ed334c4788f1622b672f47012d0e Mon Sep 17 00:00:00 2001 From: burnettk Date: Wed, 18 May 2022 09:43:20 -0400 Subject: [PATCH 01/18] python 3.9 --- .tool-versions | 1 + Pipfile | 2 +- Pipfile.lock | 887 +++++++++++++++++++++++++++---------------------- 3 files changed, 490 insertions(+), 400 deletions(-) create mode 100644 .tool-versions diff --git a/.tool-versions b/.tool-versions new file mode 100644 index 0000000..926567c --- /dev/null +++ b/.tool-versions @@ -0,0 +1 @@ +python 3.9.12 diff --git a/Pipfile b/Pipfile index 8e6109e..3171a4e 100644 --- a/Pipfile +++ b/Pipfile @@ -30,4 +30,4 @@ werkzeug = "*" flask-cors = "*" [requires] -python_version = "3.8" +python_version = "3.9" diff --git a/Pipfile.lock b/Pipfile.lock index d0ace13..574d0d6 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,11 +1,11 @@ { "_meta": { "hash": { - "sha256": "d8b2217c0bfc71926abef1f4b939b674834ce33b877e882c82a8b8d163a31821" + "sha256": "75fd6649ff65c68769bff95f41bf3e10257b26d491750133c9b1f229f66741f3" }, "pipfile-spec": 6, "requires": { - "python_version": "3.8" + "python_version": "3.9" }, "sources": [ { @@ -18,45 +18,50 @@ "default": { "alembic": { "hashes": [ - "sha256:a21fedebb3fb8f6bbbba51a11114f08c78709377051384c9c5ead5705ee93a51", - "sha256:e78be5b919f5bb184e3e0e2dd1ca986f2362e29a2bc933c446fe89f39dbe4e9c" + "sha256:29be0856ec7591c39f4e1cb10f198045d890e6e2274cf8da80cb5e721a09642b", + "sha256:4961248173ead7ce8a21efb3de378f13b8398e6630fab0eb258dc74a8af24c58" ], - "version": "==1.6.5" + "markers": "python_version >= '3.6'", + "version": "==1.7.7" }, "attrs": { "hashes": [ - "sha256:149e90d6d8ac20db7a955ad60cf0e6881a3f20d37096140088356da6c716b0b1", - "sha256:ef6aaac3ca6cd92904cdd0d83f629a15f18053ec84e6432106f7a4d04ae4f5fb" + "sha256:2d27e3784d7a565d36ab851fe94887c5eccd6a463168875832a1be79c82828b4", + "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd" ], - "version": "==21.2.0" + "markers": 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a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 4bb7cca..76a4df2 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -2,14 +2,64 @@ name: Create and publish a Docker image on: push: - branches: ['master'] + branches: ['main', 'chore/*', 'feature/*', 'bug/*'] env: REGISTRY: ghcr.io IMAGE_NAME: ${{ github.repository }} jobs: + sonarcloud: + runs-on: ubuntu-latest + steps: + - name: Checkout repository + uses: actions/checkout@v2 + with: + # Disabling shallow clone is recommended for improving relevancy of reporting + fetch-depth: 0 + - name: SonarCloud Scan + uses: sonarsource/sonarcloud-github-action@master + with: + args: > + -Dsonar.organization=sartography + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} + + run_tests: + runs-on: ubuntu-latest + services: + postgres: + image: postgres + env: + POSTGRES_PASSWORD: postgres + options: >- + --health-cmd pg_isready + --health-interval 10s + --health-timeout 5s + --health-retries 5 + ports: + - 5432:5432 + steps: + - name: Checkout repository + uses: actions/checkout@v2 + - uses: browser-actions/setup-chrome@latest + with: + chrome-version: stable + - uses: actions/setup-python@v3 + with: + python-version: '3.9' + architecture: 'x64' + - run: psql -h localhost -c 'create database pb_test;' -U postgres + - run: pip install pipenv + - run: pipenv install --dev + - run: pipenv run coverage run -m pytest + - run: pipenv run coverage xml -i + build-and-push-image: + needs: + - run_tests + - sonarcloud runs-on: ubuntu-latest permissions: contents: read diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index d6d8e8f..0000000 --- a/.travis.yml +++ /dev/null @@ -1,38 +0,0 @@ -language: python - -python: - - "3.8" - -services: - - postgresql - - docker - -addons: - chrome: stable - sonarcloud: - organization: "sartography" - -before_install: - - psql -c 'create database pb_test;' -U postgres - -install: - - pipenv install --dev - -env: - global: - - TESTING=true - - SQLALCHEMY_DATABASE_URI="postgresql://postgres:@localhost:5432/pb_test" - -script: - - pipenv run coverage run -m pytest - - pipenv run coverage xml -i - -after_success: - - sonar-scanner - -notifications: - email: - on_success: change - on_failure: always - recipients: - - dan@sartography.com diff --git a/config/default.py b/config/default.py index dc628fa..ba942a8 100644 --- a/config/default.py +++ b/config/default.py @@ -17,7 +17,7 @@ APPLICATION_ROOT = re.sub(r'//', '/', '/%s/' % environ.get('APPLICATION_ROOT', d DB_HOST = environ.get('DB_HOST', default="localhost") DB_PORT = environ.get('DB_PORT', default="5432") -DB_NAME = environ.get('DB_NAME', default="pb") +DB_NAME = environ.get('DB_NAME', default="pb2") DB_USER = environ.get('DB_USER', default="crc_user") DB_PASSWORD = environ.get('DB_PASSWORD', default="crc_pass") SQLALCHEMY_DATABASE_URI = environ.get( From b8b0d1d67f29cc9141ef6b4812bd3f12752fbcdf Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 13:25:18 -0400 Subject: [PATCH 03/18] getting tests to run on github. --- .github/workflows/create-docker-action.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 76a4df2..b7c1540 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -7,7 +7,8 @@ on: env: REGISTRY: ghcr.io IMAGE_NAME: ${{ github.repository }} - + SQLALCHEMY_DATABASE_URI: "postgresql://postgres:postgres@localhost:5432/pb_test" + PGPASSWORD: postgres jobs: sonarcloud: runs-on: ubuntu-latest From 451931a9aad20380c979b6bb09b6fbd6ecf61f45 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 15:12:30 -0400 Subject: [PATCH 04/18] upgrading from pipenv to poetry --- .github/workflows/create-docker-action.yml | 28 +- Dockerfile | 16 +- Pipfile | 33 - Pipfile.lock | 951 ----------- README.md | 20 +- docker_run.sh | 30 - pb/__init__.py | 14 - pb/forms.py | 2 +- poetry.lock | 1657 ++++++++++++++++++++ pyproject.toml | 36 + sonar-project.properties | 7 + tests/test_sanity.py | 11 +- 12 files changed, 1747 insertions(+), 1058 deletions(-) delete mode 100644 Pipfile delete mode 100644 Pipfile.lock delete mode 100755 docker_run.sh create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 sonar-project.properties diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index b7c1540..144fd66 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -52,10 +52,30 @@ jobs: python-version: '3.9' architecture: 'x64' - run: psql -h localhost -c 'create database pb_test;' -U postgres - - run: pip install pipenv - - run: pipenv install --dev - - run: pipenv run coverage run -m pytest - - run: pipenv run coverage xml -i + + + - name: Upgrade pip + run: | + pip install --constraint=.github/workflows/constraints.txt pip + pip --version + + - name: Upgrade pip in virtual environments + shell: python + run: | + import os + import pip + + with open(os.environ["GITHUB_ENV"], mode="a") as io: + print(f"VIRTUALENV_PIP={pip.__version__}", file=io) + + - name: Install Poetry + run: | + pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry + poetry --version + + - name: Run the tests + - run: poetry run coverage run -m pytest + - run: poetry run coverage xml -i build-and-push-image: needs: diff --git a/Dockerfile b/Dockerfile index 92349f4..50bcd3d 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,6 +1,6 @@ -FROM quay.io/sartography/python:3.8 +FROM ghcr.io/sartography/python:3.9 -RUN pip install pipenv +RUN pip install poetry RUN useradd _gunicorn --no-create-home --user-group RUN apt-get update && \ @@ -10,9 +10,8 @@ RUN apt-get update && \ gunicorn3 postgresql-client WORKDIR /app -COPY Pipfile Pipfile.lock /app/ -RUN cd /app && pipenv lock --keep-outdated --requirements > requirements.txt -RUN pip install -r /app/requirements.txt +COPY pyproject.toml poetry.lock /app/ +RUN poetry install RUN set -xe \ && apt-get remove -y gcc python3-dev libssl-dev \ @@ -21,4 +20,9 @@ RUN set -xe \ && rm -rf /var/lib/apt/lists/* COPY . /app/ -WORKDIR /app + +# run poetry install again AFTER copying the app into the image +# otherwise it does not know what the main app module is +RUN poetry install + +CMD ./bin/boot_server_in_docker \ No newline at end of file diff --git a/Pipfile b/Pipfile deleted file mode 100644 index 3171a4e..0000000 --- a/Pipfile +++ /dev/null @@ -1,33 +0,0 @@ -[[source]] -name = "pypi" -url = "https://pypi.org/simple" -verify_ssl = true - -[dev-packages] -pbr = "*" -coverage = "*" -pytest = "*" - -[packages] -flask = "*" -connexion = {extras = ["swagger-ui"],version = "*"} -gevent = "*" -flask-wtf = "*" -sqlalchemy = "*" -flask-sqlalchemy = "*" -flask-assets = "*" 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"sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc", - "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f" - ], - "markers": "python_version >= '3.7'", - "version": "==2.0.1" - } - } -} diff --git a/README.md b/README.md index 4a495bf..410b1f9 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ ## Requirements * Python 3 * pip (for python 3) -* pipenv (just run pip install pipenv) +* poetry (just run pip install poetry) ## Database Setup The database for the CR Connect project will create an empty database for protocol builder as well. @@ -32,21 +32,5 @@ Finally, you will need to connect to the protocol builder mock ui in a web brows And use this to connect to create a new study. Be sure the study is owned by the person you are logging in to on CR-Connect. For must development environments this will be dhf8r. - -## For future reference, these are the steps Sartography is taking to set up Mock Services: - -1. mdkir project -1. cd project -1. pipenv install -1. pipenv install flask -1. pipenv install connexion -1. place your swagger/openapi file in the root directory -1. add methods to return example data in the app.py file. - ## Deploying to staging -We don't have a travis / test environment set up for this yet, no tests -but you can build and publish it with: -```bash -docker image build -t sartography/protocol-builder-mock:latest . -docker push sartography/protocol-builder-mock:latest -``` +Builds happen automatically when pushed to the main branch. diff --git a/docker_run.sh b/docker_run.sh deleted file mode 100755 index 72a6539..0000000 --- a/docker_run.sh +++ /dev/null @@ -1,30 +0,0 @@ -#!/bin/bash - -# run migrations -export FLASK_APP=/app/pb/__init__.py - -if [ "$DOWNGRADE_DB" = "true" ]; then - echo 'Downgrading database...' - pipenv run flask db downgrade -fi - -if [ "$UPGRADE_DB" = "true" ]; then - echo 'Upgrading database...' - pipenv run flask db upgrade -fi - -if [ "$RESET_DB" = "true" ]; then - echo 'Clearing database and loading example data...' - pipenv run flask load-example-data -fi - -if [ "$LOAD_EXAMPLE_SPONSORS" = "true" ]; then - echo 'Loading example data...' - pipenv run flask load-example-sponsors -fi - -if [ "$APPLICATION_ROOT" = "/" ]; then - pipenv run gunicorn --bind 0.0.0.0:$PORT0 wsgi:app -else - pipenv run gunicorn -e SCRIPT_NAME="$APPLICATION_ROOT" --bind 0.0.0.0:$PORT0 wsgi:app -fi diff --git a/pb/__init__.py b/pb/__init__.py index fd1426b..460c582 100644 --- a/pb/__init__.py +++ b/pb/__init__.py @@ -49,20 +49,6 @@ app.static_url_path = app.config['APPLICATION_ROOT'] + 'static' print('app.static_folder', app.static_folder) print('app.static_url_path', app.static_url_path) -# remove old static map -url_map = app.url_map -try: - for rule in url_map.iter_rules('static'): - url_map._rules.remove(rule) -except ValueError: - # no static view was created yet - pass - -# register new; the same view function is used -app.add_url_rule( - app.static_url_path + '/', - endpoint='static', view_func=app.send_static_file) - assets = Environment(app) assets.init_app(app) assets.url = app.static_url_path diff --git a/pb/forms.py b/pb/forms.py index 5ee36fd..0a13b37 100644 --- a/pb/forms.py +++ b/pb/forms.py @@ -1,8 +1,8 @@ from flask_table import Table, Col, LinkCol, BoolCol, DatetimeCol, NestedTableCol from flask_wtf import FlaskForm from wtforms import SelectMultipleField, StringField, BooleanField, SelectField, validators, HiddenField, DateField, IntegerField +from wtforms.widgets import DateInput from wtforms_alchemy import ModelForm -from wtforms.widgets.html5 import DateInput from wtforms.validators import Optional from pb.models import RequiredDocument, Investigator, StudyDetails, IRBStatus, IRBInfo, IRBInfoEvent, IRBInfoStatus diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..73e2603 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1657 @@ +[[package]] +name = "alembic" +version = "1.8.0" +description = "A database migration tool for SQLAlchemy." +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +Mako = "*" +SQLAlchemy = ">=1.3.0" + +[package.extras] +tz = ["python-dateutil"] + +[[package]] +name = "atomicwrites" +version = "1.4.0" +description = "Atomic file writes." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "attrs" +version = "21.4.0" +description = "Classes Without Boilerplate" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] + +[[package]] +name = "babel" +version = "2.10.3" +description = "Internationalization utilities" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +pytz = ">=2015.7" + +[[package]] +name = "certifi" +version = "2022.6.15" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "cffi" +version = "1.15.0" +description = "Foreign Function Interface for Python calling C code." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +pycparser = "*" + +[[package]] +name = "charset-normalizer" +version = "2.0.12" +description = "The Real First Universal Charset Detector. 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diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..57f1167 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,36 @@ +[tool.poetry] +name = "protocol-builder-mock" +version = "0.1.0" +description = "Mock of the Protocol Builder at UVA so we can test." +authors = ["Dan "] + +[tool.poetry.dependencies] +python = "^3.9" +flask = "2.1.*" +connexion = {extras = ["swagger-ui"], version = "2.*.*"} +gevent = "21.*.*" +flask-wtf = "1.*.*" +sqlalchemy = "1.*.*" +flask-sqlalchemy = "2.*.*" +flask-assets = "2.*.*" +flask-table = "0.*.*" +flask-migrate = "3.*.*" +flask-marshmallow = "0.*.*" +ldap3 = "2.*.*" +ma = "1.*.*" +marshmallow-sqlalchemy = "0.*.*" +wtforms-alchemy = "0.*.*" +psycopg2-binary = "2.9.*" +pyscss = "1.*.*" +gunicorn = "20.*.*" +werkzeug = "2.1.*" +flask-cors = "3.*.*" + +[tool.poetry.dev-dependencies] +pbr = "5.*.*" +coverage = "6.*.*" +pytest = "7.*.*" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/sonar-project.properties b/sonar-project.properties new file mode 100644 index 0000000..5140b43 --- /dev/null +++ b/sonar-project.properties @@ -0,0 +1,7 @@ +sonar.organization=sartography +sonar.projectKey=sartography_protocol-builder-mock +sonar.host.url=https://sonarcloud.io +sonar.exclusions=docs/**,config/**,instance/**,migrations/**,postgres/**,readme_images/**,schema/**,templates/** +sonar.sources=pb +sonar.test.inclusions=tests +sonar.python.coverage.reportPaths=coverage.xml diff --git a/tests/test_sanity.py b/tests/test_sanity.py index a2883c3..0df4fdd 100644 --- a/tests/test_sanity.py +++ b/tests/test_sanity.py @@ -135,7 +135,16 @@ class Sanity_Check_Test(unittest.TestCase): status_id ='2' status_string = f"('{status_id}', '{status}')" - self.app.post(f'/irb_info/{study.STUDYID}', data={'UVA_STUDY_TRACKING': tracking_string, 'IRBEVENT': event_string, 'IRB_STATUS': status_string, 'IRB_REVIEW_TYPE': 'Expedited', 'IRB_ONLINE_STATUS': 'Downloaded'}) + self.app.post(f'/irb_info/{study.STUDYID}', + data={'UVA_STUDY_TRACKING': tracking_string, + 'IRBEVENT': event_string, + 'IRB_STATUS': status_string, + 'IRB_REVIEW_TYPE': 'Expedited', + 'IRB_ONLINE_STATUS': 'Downloaded', + 'IRB_ADMINISTRATIVE_REVIEWER': 'DanTheMan', + 'IRB_OF_RECORD': '', + 'STUDYIRBREVIEWERADMIN':''}) + count = IRBInfo.query.filter(IRBInfo.SS_STUDY_ID == study.STUDYID).count() self.assertGreater(count, 0) From 8a671dce94d231c65f73c25d8ca20b95604ecb15 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 15:15:28 -0400 Subject: [PATCH 05/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 144fd66..08ba665 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -51,8 +51,9 @@ jobs: with: python-version: '3.9' architecture: 'x64' - - run: psql -h localhost -c 'create database pb_test;' -U postgres + - name: Setup Database + - run: psql -h localhost -c 'create database pb_test;' -U postgres - name: Upgrade pip run: | From cd051bb8ccd0481021beaf69f2fae3f37ff2026f Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 15:17:36 -0400 Subject: [PATCH 06/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 08ba665..fbf895a 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -53,7 +53,7 @@ jobs: architecture: 'x64' - name: Setup Database - - run: psql -h localhost -c 'create database pb_test;' -U postgres + run: psql -h localhost -c 'create database pb_test;' -U postgres - name: Upgrade pip run: | @@ -75,8 +75,9 @@ jobs: poetry --version - name: Run the tests - - run: poetry run coverage run -m pytest - - run: poetry run coverage xml -i + run: | + poetry run coverage run -m pytest + poetry run coverage xml -i build-and-push-image: needs: From 3e7ddd4468f97a521560196ee72f726cbf714534 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 15:28:05 -0400 Subject: [PATCH 07/18] itterating on upgrade to poetry. --- .github/workflows/constraints.txt | 5 +++++ .github/workflows/create-docker-action.yml | 4 +--- 2 files changed, 6 insertions(+), 3 deletions(-) create mode 100644 .github/workflows/constraints.txt diff --git a/.github/workflows/constraints.txt b/.github/workflows/constraints.txt new file mode 100644 index 0000000..74b97e4 --- /dev/null +++ b/.github/workflows/constraints.txt @@ -0,0 +1,5 @@ +pip==22.0.4 +nox==2022.1.7 +nox-poetry==0.9.0 +poetry==1.1.13 +virtualenv==20.14.1 diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index fbf895a..093dd11 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -75,9 +75,7 @@ jobs: poetry --version - name: Run the tests - run: | - poetry run coverage run -m pytest - poetry run coverage xml -i + run: poetry run -m pytest build-and-push-image: needs: From 3f588c398aacba3b64466e6f108853a4cd2a23a9 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 15:40:32 -0400 Subject: [PATCH 08/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 093dd11..7c65b29 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -75,12 +75,11 @@ jobs: poetry --version - name: Run the tests - run: poetry run -m pytest + run: poetry run coverage run -m pytest build-and-push-image: needs: - run_tests - - sonarcloud runs-on: ubuntu-latest permissions: contents: read From 0ee81bbd90abefaf20803e8a2033f14b9b495552 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:00:59 -0400 Subject: [PATCH 09/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 23 ++++------------------ 1 file changed, 4 insertions(+), 19 deletions(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 7c65b29..d4725ee 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -10,23 +10,6 @@ env: SQLALCHEMY_DATABASE_URI: "postgresql://postgres:postgres@localhost:5432/pb_test" PGPASSWORD: postgres jobs: - sonarcloud: - runs-on: ubuntu-latest - steps: - - name: Checkout repository - uses: actions/checkout@v2 - with: - # Disabling shallow clone is recommended for improving relevancy of reporting - fetch-depth: 0 - - name: SonarCloud Scan - uses: sonarsource/sonarcloud-github-action@master - with: - args: > - -Dsonar.organization=sartography - env: - GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} - SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} - run_tests: runs-on: ubuntu-latest services: @@ -73,13 +56,15 @@ jobs: run: | pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry poetry --version - + poetry install + - name: Run the tests - run: poetry run coverage run -m pytest + run: poetry run -m pytest build-and-push-image: needs: - run_tests + - sonarcloud runs-on: ubuntu-latest permissions: contents: read From ff54e5e9a31f48629820153ec0eef56f55b8fb5c Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:01:59 -0400 Subject: [PATCH 10/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index d4725ee..6ccaeda 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -64,7 +64,6 @@ jobs: build-and-push-image: needs: - run_tests - - sonarcloud runs-on: ubuntu-latest permissions: contents: read From 7e0b4a3cc58373b8b456e1d9eda9b4d288fd4615 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:05:59 -0400 Subject: [PATCH 11/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 6ccaeda..c061dcc 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -57,6 +57,7 @@ jobs: pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry poetry --version poetry install + poetry env use 3.9 - name: Run the tests run: poetry run -m pytest From 46e04622401fcd36fe254b0a87ac5544b22f05a2 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:09:52 -0400 Subject: [PATCH 12/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index c061dcc..774e941 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -60,7 +60,7 @@ jobs: poetry env use 3.9 - name: Run the tests - run: poetry run -m pytest + run: poetry run pytest build-and-push-image: needs: From f77f1bd8a4615aa761085baafb84110bb0cac5d4 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:15:33 -0400 Subject: [PATCH 13/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 774e941..e1e8b5e 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -30,10 +30,9 @@ jobs: - uses: browser-actions/setup-chrome@latest with: chrome-version: stable - - uses: actions/setup-python@v3 + - uses: actions/setup-python@v4 with: python-version: '3.9' - architecture: 'x64' - name: Setup Database run: psql -h localhost -c 'create database pb_test;' -U postgres From ad563bb2d2a250dc27bb0967634e7b08b7beed86 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:18:29 -0400 Subject: [PATCH 14/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index e1e8b5e..8af6356 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -31,6 +31,7 @@ jobs: with: chrome-version: stable - uses: actions/setup-python@v4 + run: python -V with: python-version: '3.9' @@ -41,6 +42,7 @@ jobs: run: | pip install --constraint=.github/workflows/constraints.txt pip pip --version + python -V - name: Upgrade pip in virtual environments shell: python @@ -57,9 +59,13 @@ jobs: poetry --version poetry install poetry env use 3.9 + python -V + - name: Run the tests - run: poetry run pytest + run: | + ls -a + poetry run pytest build-and-push-image: needs: From 1723925a26f53436abcbfbe324f9878c22d5446e Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:20:17 -0400 Subject: [PATCH 15/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 8af6356..b5a2094 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -31,7 +31,6 @@ jobs: with: chrome-version: stable - uses: actions/setup-python@v4 - run: python -V with: python-version: '3.9' @@ -55,7 +54,7 @@ jobs: - name: Install Poetry run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry + pip install --pip-args=--constraint=.github/workflows/constraints.txt poetry poetry --version poetry install poetry env use 3.9 From 6d12ccc86aab16675ce2fa7a25341ad913ac5491 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:21:00 -0400 Subject: [PATCH 16/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index b5a2094..66806c3 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -30,6 +30,7 @@ jobs: - uses: browser-actions/setup-chrome@latest with: chrome-version: stable + - run: python -V - uses: actions/setup-python@v4 with: python-version: '3.9' From 27af034ff0a02394ecf018beba5dca532b8f16c2 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:22:39 -0400 Subject: [PATCH 17/18] Updating docker action. --- .github/workflows/create-docker-action.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index 66806c3..c8568ae 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -55,7 +55,7 @@ jobs: - name: Install Poetry run: | - pip install --pip-args=--constraint=.github/workflows/constraints.txt poetry + pip install --constraint=.github/workflows/constraints.txt poetry poetry --version poetry install poetry env use 3.9 From f78ebf695917e48fbbdc3889e10b1986f526c2f1 Mon Sep 17 00:00:00 2001 From: Dan Date: Mon, 20 Jun 2022 16:30:01 -0400 Subject: [PATCH 18/18] Update docker action. --- .github/workflows/create-docker-action.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/create-docker-action.yml b/.github/workflows/create-docker-action.yml index c8568ae..e6641a8 100644 --- a/.github/workflows/create-docker-action.yml +++ b/.github/workflows/create-docker-action.yml @@ -71,6 +71,7 @@ jobs: needs: - run_tests runs-on: ubuntu-latest + if: github.ref == 'refs/heads/main' permissions: contents: read packages: write