15750beb10
Added a comment on why we moved the session.add(study) line
2022-03-17 15:18:49 -04:00
db6f594ba9
Allow for missing data
2022-03-17 15:18:06 -04:00
a578cf2498
Some studies don't have a DATELASTMODIFIED, so we use DATECREATED instead
2022-03-17 14:50:47 -04:00
be2b7c07ef
add the new study to the session after we run update_from_protocol_builder
2022-03-17 14:29:38 -04:00
9b1a7ff286
Fixes #668 - Cancel/Notify Called when loading last task
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don't call cancel notify if its an end event
2022-03-17 10:58:25 -04:00
69b5d80b23
Included templates wrapped by if clause don't always exist
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Don't raise an error here
2022-03-16 16:57:26 -04:00
9a345da763
typo
2022-03-16 16:54:36 -04:00
c18bc6f876
fix study service
2022-03-16 16:21:02 -04:00
5b7e71d42d
meta field for categories
2022-03-16 12:49:35 -04:00
1506952df7
task_trace was a little mixed up in the errors.
2022-03-16 10:18:50 -04:00
829c810807
wip
2022-03-15 13:21:58 -04:00
37d92c6a5f
WIP ~ adding a category metadata object
2022-03-15 10:49:41 -04:00
791ab20f8c
Merge pull request #494 from sartography/chore/fix_validation_errors
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Chore/fix validation errors
2022-03-14 16:51:27 -04:00
8ea8993421
Merge pull request #493 from sartography/jinja-included-includes-670
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Jinja included includes #670
2022-03-14 16:49:56 -04:00
562ad1ac27
Merge pull request #492 from sartography/columns-missing-from-logs-678
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Columns missing from logs #678
2022-03-14 16:48:50 -04:00
483d7e858b
Improved Errors - Pick up on the new task_trace information in WorkflowException and pass it on through the api.
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Also: All script tasks should raise WorkflowTaskExecExceptions - NOT APIExceptions - this is because our scripts are executed by Spiff (not the other way around) so the errors need to pass fluidly through spiff, and come back to use THEN we can convert them to APIErrors. Otherwise we lose all kinds of good information about the error.
2022-03-14 16:00:53 -04:00
4a626afa7d
Added comment about the test
2022-03-14 14:01:13 -04:00
eb615012af
Cleanup - remove unused import, print statement
2022-03-14 13:56:38 -04:00
238840822d
Included template test from hell
2022-03-14 13:54:46 -04:00
416adcbe69
Recursively parse the included templates
2022-03-14 13:51:41 -04:00
a974b65333
Remove unused code
2022-03-14 12:03:11 -04:00
3b049e358d
Remove unused imports
2022-03-14 12:02:48 -04:00
ace988d551
assert we get category and workflow in all the places
2022-03-14 12:02:11 -04:00
a6a98bed10
Include workflow_spec_id when adding a log
2022-03-14 11:56:36 -04:00
90bfbed6fd
Merge branch 'dev' into chore/fix_validation_errors
2022-03-14 10:58:01 -04:00
a926c9c85a
Merge pull request #490 from sartography/chore/log-changes-661
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Chore/log changes 661
2022-03-12 16:23:17 -05:00
0510db38f1
Dealing with merge of migrations.
2022-03-12 16:22:45 -05:00
3189b07446
Merge branch 'dev' into chore/log-changes-661
2022-03-12 16:20:22 -05:00
dec63839f3
Merge remote-tracking branch 'origin/dev' into chore/log-changes-661
2022-03-12 16:19:23 -05:00
2fc4b44ef3
Create a path to directly download the spreadsheet file (and avoid the weird dance on the front end of making an API call to get file data.)
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Fixing pagination. Seems the front end uses a page_index that is 0 based, and sqlAlchemy prefers to start at 1.
2022-03-12 16:19:07 -05:00
ceb817bb75
Merge pull request #491 from sartography/chore/new-progress-stats-673
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migration
2022-03-12 16:15:20 -05:00
be6a6bcf2e
migration
2022-03-12 15:20:14 -05:00
a536a79e87
Test for downloading logs
2022-03-12 14:29:02 -05:00
e7b9c2ed31
Merge branch 'chore/log-changes-661' of https://github.com/sartography/cr-connect-workflow into chore/log-changes-661
2022-03-12 14:25:16 -05:00
015eeccb54
Change API endpoint to a GET
2022-03-12 14:23:22 -05:00
4e9fe3a6bb
Merge branch 'dev' into chore/fix_validation_errors
2022-03-12 14:09:40 -05:00
4ab314c7b8
Be sure to delete the data store items when you delete a study.
2022-03-12 13:38:09 -05:00
00a99579c9
Revert "Be sure to delete the data store items when you delete a study."
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This reverts commit c8e987cd39
2022-03-12 13:36:13 -05:00
c8e987cd39
Be sure to delete the data store items when you delete a study.
2022-03-12 13:35:04 -05:00
52b5e1d34a
Fixing tests.
2022-03-11 18:02:37 -05:00
0cee44985a
Merge pull request #489 from sartography/chore/new-progress-stats-673
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Adds 2 new study progress statuses
2022-03-11 15:54:24 -05:00
4f0b9e3c4f
Adds 2 new study progress statuses
2022-03-11 15:40:13 -05:00
b753f06394
Changes to remove pagination for the get_logs scripts.
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We only use pagination for the get_logs_for_study API endpoint. (Used on the study page)
2022-03-11 14:03:09 -05:00
1bfe656817
Remove unused API endpoint to get logs for a workflow.
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We have a script for this that is used (in workflows)
We do use the API endpoint to get logs for a study. (On the study page)
2022-03-11 14:01:06 -05:00
733e596283
rename get_logs to get_logs_for_workflow to better represent what it does
2022-03-11 13:58:25 -05:00
356a322e85
Merge branch 'dev' into chore/log-changes-661
2022-03-11 08:50:13 -05:00
2d5517bd15
Merge pull request #487 from sartography/chore/update-get-workflow-status-664
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Chore/update get workflow status #664
2022-03-10 14:30:32 -05:00
d90bf1c977
always but always return a valid status.
2022-03-10 14:28:47 -05:00
e1625d45f0
Merge pull request #488 from sartography/chore/add-metrics-to-logging-level-665
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Chore/add metrics to logging level #665
2022-03-10 13:27:52 -05:00
5990f37183
Making the run-all-validations easier to work with.
2022-03-10 13:18:22 -05:00
mike cullerton
alicia pritchett
Dan