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Author	SHA1	Message	Date
Aaron Louie	dc53939eb1	Merge remote-tracking branch 'origin/master' into feature/protocol-builder	2020-02-28 11:17:17 -05:00
Aaron Louie	4534b0c2df	Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.	2020-02-28 11:14:30 -05:00
Aaron Louie	0cc59d0974	Adds study inactive flag. Sets study to inactive if not found in Protocol Builder.	2020-02-27 11:17:58 -05:00
Aaron Louie	f3068e68db	Adds user to example data. Requires login before adding/updating a study.	2020-02-27 10:30:16 -05:00
Aaron Louie	27d7afb656	Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.	2020-02-27 09:54:46 -05:00
Aaron Louie	3ef4860391	Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database	2020-02-26 18:06:51 -05:00
Dan Funk	c6eb2d937d	Enable autoescape security feature for processing markdown data in descriptions from the BPMN Diagrams	2020-02-25 16:21:47 -05:00
Dan Funk	1e8a095760	Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.	2020-02-25 12:01:25 -05:00
Aaron Louie	002207cbca	Adds redirect URL to login handler	2020-02-24 16:59:16 -05:00
Aaron Louie	1ac9180304	Updates tests to match changing sso_backdoor to query string params	2020-02-21 12:03:14 -05:00
Aaron Louie	e4efc5e4e2	Fixes broken test	2020-02-21 12:02:35 -05:00
Aaron Louie	443d38a9a1	Prevents duplication of study on update.	2020-02-21 11:24:51 -05:00
Aaron Louie	eb6354db6e	Moves sso_backdoor parameters to query string. Prevents duplication of user on update.	2020-02-21 11:24:39 -05:00
Aaron Louie	01228d5a8a	Edits frontend callback URL	2020-02-20 21:10:34 -05:00
Aaron Louie	9f4301712e	Merge remote-tracking branch 'origin/master'	2020-02-20 17:23:17 -05:00
Aaron Louie	a6e0809183	Adds SSO attributes. Prevents uid duplication errors.	2020-02-20 17:23:10 -05:00
Dan Funk	d3c51af1f5	Merge branch 'master' of github.com:sartography/cr-connect-workflow	2020-02-20 16:04:44 -05:00
Dan Funk	af35f182f6	Random Fact updated with a markdown set of examples	2020-02-20 16:04:38 -05:00
Aaron Louie	0cda7c66e5	Merge remote-tracking branch 'origin/master'	2020-02-20 15:43:34 -05:00
Aaron Louie	581434b453	Adds SSO header attributes	2020-02-20 15:43:29 -05:00
Dan Funk	a94596112d	Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.	2020-02-20 14:35:21 -05:00
Dan Funk	8b48acea9a	Protocol builder connections, default configuration	2020-02-20 13:30:48 -05:00
Dan Funk	2cc6010c8d	Protocol builder connections	2020-02-20 13:30:04 -05:00
Dan Funk	705cfc0a35	forgot a critical migration in the last commit.	2020-02-19 12:00:14 -05:00
Dan Funk	1a9b5b50e5	Merge branch 'master' of github.com:sartography/cr-connect-workflow	2020-02-18 16:39:11 -05:00
Dan Funk	a642593e3d	Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.	2020-02-18 16:38:56 -05:00
Aaron Louie	6075a32d07	Edits default value	2020-02-18 10:17:14 -05:00
Aaron Louie	16db1e3504	Adds default_value to Task schema	2020-02-18 10:14:03 -05:00
Aaron Louie	386df9e912	Generates coverage data	2020-02-12 11:31:02 -05:00
Aaron Louie	3cd27c3410	Switches back to last-known working config. Installs coverage.	2020-02-12 11:20:54 -05:00
Aaron Louie	7855bed328	Python 3.7 isn't available anymore on Travis CI trusty? Defaults to Python 3.6.1	2020-02-12 11:14:04 -05:00
Aaron Louie	5a53ddb88c	Fixes vulnerability identified by SonarCloud	2020-02-12 11:07:01 -05:00
Aaron Louie	0664fec141	Generates coverage.xml report	2020-02-12 11:04:04 -05:00
Aaron Louie	a5894b1745	Removes sonar token	2020-02-12 10:42:00 -05:00
Aaron Louie	8322713ea6	Running sonar from Travis CI	2020-02-12 10:31:08 -05:00
Aaron Louie	6408e45093	Trying to get sonar to run properly	2020-02-12 10:21:00 -05:00
Aaron Louie	5f461d9e87	Fixes FactService	2020-02-11 22:13:46 -05:00
Aaron Louie	a69c709bd1	Merge pull request #8 from sartography/feature/crc_demo_workflows ... Feature/crc demo workflows	2020-02-11 15:20:22 -05:00
Aaron Louie	b0b1a6e5e8	Saves form field key	2020-02-11 15:03:25 -05:00
Aaron Louie	0a3a932c50	Comments out study workflow for now. Fixes failing unit tests.	2020-02-11 13:40:14 -05:00
Aaron Louie	0ef1a178ed	Merge branch 'master' into feature/crc_demo_workflows	2020-02-11 13:30:57 -05:00
Aaron Louie	f58ed5b6ee	Adds another user task at the end	2020-02-11 12:14:10 -05:00
Dan Funk	709bae76b2	Removing a rogue comma that was causing havoc. Also, don't fail if a mock already exists in the test database.	2020-02-11 11:11:21 -05:00
Dan Funk	879a248002	Adding a test to assure the file creation occurs as expected via the API.	2020-02-10 20:54:22 -05:00
Aaron Louie	359fb4a2f3	Adds draft demo workflow specs	2020-02-10 17:19:11 -05:00
Aaron Louie	f128e7206b	Adds placeholder scripts for testing	2020-02-10 17:18:51 -05:00
Dan Funk	9f0eb8477a	Fix for a bug in the File service where it was being overly restrictive.	2020-02-10 16:27:57 -05:00
Dan Funk	1d24ebe382	Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.	2020-02-10 16:19:23 -05:00
Aaron Louie	fd9c685979	Handles processes with multiple top-level elements	2020-02-10 15:20:45 -05:00
Aaron Louie	b63ad7f707	Adds new token	2020-02-10 10:03:21 -05:00