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1430 Commits

Author SHA1 Message Date
Dan Funk
97c29bf77c
Merge pull request #449 from sartography/files-to-filesystem-572 
Files to filesystem 572
 2022-01-26 10:11:26 -05:00
mike cullerton
d82367ab2a Move temp_migration_service code into migration 7225d990740e 
Delete test_files_to_filesystem and test_files_from_filesystem--they were only used to give me access to the migration methods
 2022-01-26 09:58:46 -05:00
Dan
f3637ee6a0 resolving todos, as they are done, and removing commented out code that is no longer in use. 2022-01-25 16:37:17 -05:00
Dan
8529465322 Removed the method get_spec_data_files completly - using get_spec_files and get_spec_data to get this information instead. 
Only load the spec data files if you are creating a new workflow, otherwise just deserialize the json.
Removed the stuff about calculaing the version of the spec, as we don't use it.
 2022-01-25 16:10:54 -05:00
Dan Funk
58b3378fbf
Merge pull request #448 from sartography/get-spec-from-workflow-id-589 
Get spec from workflow id #589
 2022-01-24 16:40:53 -05:00
Dan
9690ebf883 minor minor stuff. 2022-01-24 14:43:36 -05:00
mike cullerton
1fe65ff6b7 Script to get a workflow spec from a workflow id. 2022-01-24 12:40:50 -05:00
mike cullerton
662014d378 Merge branch 'fix-login-590' into missing-bpmn-534 2022-01-21 15:31:13 -05:00
mike cullerton
7da2fa2171 Fix for failing tests 2022-01-21 15:13:05 -05:00
mike cullerton
65345a8e91 We can now set our own user_id in instance.config so that user dhf8r isn't always logged in. 2022-01-21 14:42:36 -05:00
mike cullerton
91fa44b2ab ** WIP ** 
Committing so I can work on another ticket.
 2022-01-21 14:37:11 -05:00
mike cullerton
58658d9507 Create separate tags for reference files and spec files 2022-01-20 15:58:31 -05:00
mike cullerton
bc65f1c64a Limit modifying reference files to admins 2022-01-20 15:43:32 -05:00
mike cullerton
76b09a418e Created separate api files for spec_files and reference_files 2022-01-20 15:22:47 -05:00
mike cullerton
ca54b850cd UNDO my previous commit regarding get_files needs to have workflow_spec_id 
We need to call `get_spec_files` instead now
 2022-01-20 14:57:32 -05:00
Dan
f815add699 1. Add a default directory for the location of SYNC files. 
2. Added a last_updated column to the lookup table
3. The Lookup service now uses the above, and compares it to the actual file date, we can then rebuild the lookup if needed.
4. That 755 migration loads up the models, so when you change the models, the migration starts to fail.  Not really sure what to do here, but modify the migration while we are in process.
 2022-01-20 13:05:58 -05:00
mike cullerton
9ea1399578 get_files needs to have workflow_spec_id 2022-01-20 09:54:22 -05:00
mike cullerton
68820c67cb Removed (almost) all references to WorkflowSpecDependencyFile 
(There is still a call in the lookup service, but we need to decide how to fix that)
 2022-01-19 16:12:54 -05:00
mike cullerton
16a9a18c5b Fixed get reference file info, and added test 2022-01-19 15:17:35 -05:00
mike cullerton
091d71eb0f Cleaned up code around differences between file info and file data 
Cleaned up some api code around differences between file, spec_file, and reference_file
Cleaned up some api code around differences between file info and file data
Fixed some tests for file api
 2022-01-19 13:47:14 -05:00
mike cullerton
d83f28e1a7 Pushed so Dan can play 2022-01-18 15:55:49 -05:00
mike cullerton
68ac056457 Merge branch 'dev' into files-to-filesystem-572 2022-01-18 08:18:14 -05:00
mike cullerton
6da6e05171 *** WIP *** 
code for updating spec files
some cleanup

tests pass, but we don't have all the tests we need.
 2022-01-13 15:24:29 -05:00
mike cullerton
b99ed73951 Remove unused imports 2022-01-12 15:00:26 -05:00
mike cullerton
cfa9f00bf3 *** WIP *** 
Moved reference files to their own service
 2022-01-12 14:37:33 -05:00
mike cullerton
b6b9482a64 *** WIP *** 
Incremental commit. Mainly cleaning up failing tests.
 2022-01-12 13:16:09 -05:00
Dan
e67a1554ea Always but always but ALWAYS, use server_default=func.now() when setting up a datetime field we autopopulate. 2022-01-12 12:33:59 -05:00
Dan
c2a11a7d95 fixing an error where I accidentally deleted a bit of the API. 2022-01-12 09:58:34 -05:00
Dan
d346589e07 1. added the ability to filter on level and user. 
2. added a total to the response, so you can see what the total count of users is.
3. adding user_uid to the task_log table.
 2022-01-12 08:58:50 -05:00
mike cullerton
9cc91f92c3 *** WIP *** 
cleanup - removing commented code
 2022-01-11 15:55:08 -05:00
mike cullerton
4df2ed6ce4 *** WIP *** 
Failing tests, and missing functionality.
Committing to get stuff on Github.
 2022-01-11 15:30:22 -05:00
Dan
7176452fe3 forgot the migration, also fixing an error in the TaskLogQuerySchema. 2022-01-10 13:26:16 -05:00
Dan
962d05c875 1. Created a TaskLoggingService to encapsulate what we are doing with Task Logging through BPMN Script calls and API calls from the front end. 
2. Added two api endpoints that will allow us to get all the logs for a specific workflow or study.
3. Assured that requests for logs are paginated, sortable, and can be limited to a specific code if needed.
4. Assure that we only use logging levels that match the log levels of Python.
 2022-01-10 13:16:54 -05:00
mike cullerton
f537fd7fbf *** WIP *** 2022-01-07 15:58:23 -05:00
mike cullerton
dc27f795c8 *** WIP *** 
Committing because it is Friday afternoon, and my computer is acting flaky
 2022-01-07 15:34:51 -05:00
mike cullerton
86a6039dc8 *** WIP *** 
**Many** tests are failing!

Committing so I can merge dev into this branch
 2022-01-06 11:46:54 -05:00
mike cullerton
110e2c56f8 cli entry point for temp_migration_service. 
Ultimately, this will call the real service.
 2022-01-04 07:28:23 -05:00
mike cullerton
7f9519736c fixed some issues with how we look up records. Try to depend on the data_obj 2022-01-04 07:26:12 -05:00
mike cullerton
2cd0f84a47 Merge branch 'dev' into files-to-filesystem-572 2022-01-03 08:06:17 -05:00
Dan
1446302a04 A quick fix for an error we are seeing in testing. 2021-12-30 15:27:31 -05:00
Dan
3480e1c8ab use a signal, in addition to firing off a cancel notify when a workflow is restarted. 2021-12-23 15:30:09 -05:00
Dan
bd3176eea6 Fixes #578 - issue with us displaying an incorrect end event in some cases. 2021-12-22 16:27:52 -05:00
Dan
c83b047881 Fixing some bugs I introduced with the latest fix. 2021-12-21 16:22:41 -05:00
Dan
f129509802 Looks like reording the deletes allows us to remove workflow specs a little easier. Tested this with libraries, and seems to work ok. 2021-12-20 14:36:45 -05:00
mike cullerton
3fa5505970 Cleanup - remove print statements 2021-12-17 12:30:10 -05:00
mike cullerton
6073412d82 Clean up imports 2021-12-17 12:03:45 -05:00
mike cullerton
aa27df7840 Process the spec files and their metadata 2021-12-17 11:46:21 -05:00
alicia pritchett
a81f25f0ee Just kidding. We should make deepcopy and put in fake data 4 valdiation 
see above. previously i deleted this, because i didnt want unitializsed data in task data. well heres a hint. don't put it in task data. make a deep copy and hold on to that for validation pursposes
 2021-12-16 14:47:04 -05:00
mike cullerton
5c90ce01a6 *** WIP *** 
Temp services `ToFilesystemService` and `FromFilesystemService` for migrating files To and From the filesystem - Not sure where these classes will end up
Tests to call the two services.
upgrade method in migration that writes workflow spec files and metadata to filesystem
 2021-12-16 14:22:37 -05:00
mike cullerton
338352017b *** WIP *** 
Moving files to the filesystem
Tools for reading/writing metadata for categories and specs
 2021-12-16 08:41:49 -05:00