Commit Graph

145 Commits

Author SHA1 Message Date
Dan Funk e91d7aff2f Fixes #11: adding a delete endpoint for studies. It won't delete studies that have workflows, you have to delete those first)
Removing the "default" error response from the api.yml, it was all noise.
2020-03-09 15:12:40 -04:00
Dan Funk 9fcd6f38f4 Merge remote-tracking branch 'origin/master' into feature/pb_services 2020-03-05 17:13:41 -05:00
Dan Funk e501fb31fd Cleaning up swagger docs. 2020-03-05 17:10:00 -05:00
Dan Funk 906bacff6a Expose a flag on the workflow model in the api to shown if it is using the latest spec. Added a soft_reset and hard_reset onto the workflow endpoint that will allow you to cause a hard or soft reset. 2020-03-05 16:45:44 -05:00
Aaron Louie 01720a8bbf Replaces migration and fixes broken tests 2020-03-03 16:02:01 -05:00
Dan Funk 94f828dfd6 Adding a simple endpoint that describes what scripts are currently available, along with a brief description. 2020-03-03 15:30:42 -05:00
Dan Funk 5e3fdaaa94 New set of "Tools" api endpoints, that provides a way to quickly render markdown or word documents by uploading json data and a template to populate.
Improved Error messages / Error processing.  You can now just throw an APIError anywhere, and it will be properly serialized and returned.
2020-02-29 17:22:38 -05:00
Aaron Louie 3ef4860391 Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database 2020-02-26 18:06:51 -05:00
Aaron Louie 002207cbca Adds redirect URL to login handler 2020-02-24 16:59:16 -05:00
Aaron Louie eb6354db6e Moves sso_backdoor parameters to query string. Prevents duplication of user on update. 2020-02-21 11:24:39 -05:00
Aaron Louie 581434b453 Adds SSO header attributes 2020-02-20 15:43:29 -05:00
Dan Funk 1a9b5b50e5 Merge branch 'master' of github.com:sartography/cr-connect-workflow 2020-02-18 16:39:11 -05:00
Dan Funk a642593e3d Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly. 2020-02-18 16:38:56 -05:00
Aaron Louie 16db1e3504 Adds default_value to Task schema 2020-02-18 10:14:03 -05:00
Aaron Louie f142d02a30 Adds workflow_spec_id back in to WorkflowApi 2020-02-07 12:36:08 -05:00
Dan Funk 9bd93748be Returning better cleaner information about workflow with the workflow endpoint. Removes the get_all_tasks and get_user_tasks endpoints as tasks are returned with the workflow. Workflow endpoint also includes the last task and next_task, which may or may not be user tasks. The task "type" returned is now the class name of the task_spec, rather than just the word "task". 2020-02-07 11:34:44 -05:00
Aaron Louie 5a6d589e6d Adds form_field_key to API 2020-02-05 15:06:19 -05:00
Aaron Louie 3ee0426ba9 Adds workflow_id to file endpoints. 2020-02-04 14:26:53 -05:00
Aaron Louie e717c25a25 Study ID is an integer. Task ID is a string. 2020-02-03 22:29:41 -05:00
Aaron Louie 0368657549 Adds ability to get FileModel records by study and task 2020-02-03 21:56:18 -05:00
Aaron Louie e4b2a7a641 Adds endpoint to retrieve all user tasks for a workflow, regardless of state 2020-01-31 12:40:08 -05:00
Aaron Louie 918a6d5ab7 Removes unsupported read-only flag on File schema for now 2020-01-31 11:33:31 -05:00
Aaron Louie a0e60ddd77 Renames endpoint methods for clarity. Adds endpoint for just updating file info. 2020-01-31 10:39:19 -05:00
Dan Funk 3fb831bae4 When you create a study, all possible workflows are then associated with that study. 2020-01-30 09:11:17 -05:00
Dan Funk acca1523b7 adding an api call for getting a single workflow spec. 2020-01-28 10:14:06 -05:00
Aaron Louie 6aa3d711ce Adds endpoint to delete workflow spec 2020-01-23 16:05:09 -05:00
Dan Funk 900819e647 fixing failed run 2020-01-14 15:39:54 -05:00
Aaron Louie 7ce48e8deb Removes type hinting, in case that's breaking something. 2020-01-14 15:10:43 -05:00
Aaron Louie 054bd88760 Fixes path to api methods 2020-01-14 14:55:10 -05:00
Aaron Louie 790b0dfc3a Adds endpoint for modifying existing workflow spec 2020-01-14 14:10:53 -05:00
Dan Funk 6361e94af5 Allow submitting data and progressing to the next task in a workflow. 2020-01-14 11:02:44 -05:00
Aaron Louie 75881bf1d3 Adds endpoint for adding a workflow specification 2020-01-13 21:43:09 -05:00
Dan Funk a3d7ba8114 WIP 2020-01-07 13:23:46 -05:00
Aaron Louie 872f3fca1b Returns workflow spec id with Workflow schema 2020-01-06 09:18:13 -05:00
Aaron Louie e75da611ca Adds endpoints for creating and updating a Study. 2020-01-03 11:44:24 -05:00
Dan Funk c4cbaeb64e Refactor models into seperate directories 2019-12-31 16:32:47 -05:00
Dan Funk 115a88347f Stupid tag 2019-12-30 13:34:18 -05:00
Dan Funk fb465531ca Add the ability to delete a workflow. 2019-12-30 13:15:39 -05:00
Dan Funk 2ac2514e32 merge conflicts 2019-12-27 13:53:29 -05:00
Dan Funk 0b71833946 Adding file management. Files are stored in the database along with basic meta data. 2019-12-27 13:50:03 -05:00
Aaron Louie 9b6599505d Adds task title and documentation 2019-12-20 15:39:02 -05:00
Aaron Louie dc13855593 Adds properties and validation to form 2019-12-20 14:32:04 -05:00
Dan Funk bb6ab4b8e8 Tasks can have forms and they are returned correctly. 2019-12-19 11:58:51 -05:00
Dan Funk fbbd6c6659 Adding a workflow from a spec 2019-12-18 14:42:40 -05:00
Dan Funk 9861f6baf3 Lots and lots of random stuff as I organize code and get things to make sense. 2019-12-18 14:02:17 -05:00