8f28970f92
Resolving an alembic conflict.
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Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
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Irb info script #307
2021-05-04 11:40:52 -04:00
50cb078390
Merge pull request #303 from sartography/feature/performance-refactor
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Performance Refactor
2021-05-04 11:31:10 -04:00
34759a2f3d
Merge branch 'dev' into feature/performance-refactor
2021-05-04 11:30:13 -04:00
4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get
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Add default capability to file_data_get script
2021-05-04 11:28:40 -04:00
0747e2141e
Merge pull request #301 from sartography/310-task-event-timezone
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310 task event timezone
2021-05-04 11:21:49 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
81467d6a8d
Merge pull request #299 from sartography/297-filename-in-documents
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Add filename to files listing.
2021-05-04 11:19:59 -04:00
d68f319cf7
Merge pull request #298 from sartography/316-Shield-Test-Error
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Emulate checks on keyword arguments and then return. Validate only sh…
2021-05-04 11:18:36 -04:00
77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
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Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
7689281d68
Fixed typo. Response should be list, not dict.
2021-05-03 14:52:29 -04:00
576f3a661d
Removed print statement used while debugging.
2021-05-03 14:52:01 -04:00
c8446bfafd
Mock the Protocol Builder response in my test
2021-05-03 14:51:27 -04:00
804926dbac
Fixed problem where WorkflowService.make_test_workflow did not add a study to the workflow_model
2021-05-01 15:55:20 -04:00
9465b6408d
Test and workflow for new `get_irb_info` script
2021-05-01 15:53:43 -04:00
060ee5076d
New script to get IRB Info for a study
2021-05-01 15:52:41 -04:00
1bcf4ea02e
Test and mock data for new `get_irb_info` service in ProtocolBuilderService
2021-05-01 15:23:07 -04:00
22b3230243
Added service `get_irb_info` to `crc.services.protocol_builder.ProtocolBuilderService`
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Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
2021-05-01 15:20:47 -04:00
a719cf4bf9
When retrieving the study, only update the status of underlying workflows if specifically requested.
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Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
7608a889fb
Add default capability to file_data_get
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script
2021-04-30 10:11:50 -04:00
eb153c3ffc
Fixed column definition for standalone
2021-04-29 14:29:43 -04:00
24c818bf31
Added study_id to workflow_api
2021-04-29 14:29:21 -04:00
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
cc77a9182c
Add filename to files listing.
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Fixes #297
2021-04-28 10:37:14 -04:00
dc6f1cc80d
Emulate checks on keyword arguments and then return. Validate only should have no side effects so the previous behavior was a bug.
2021-04-28 10:03:52 -04:00
c029dad688
Convert some datetime columns to include timezone
2021-04-28 10:00:22 -04:00
71a63c049d
Merge remote-tracking branch 'origin/dev' into dev
2021-04-27 12:16:36 -04:00
248ca6a33a
Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees)
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todo: Create a ticket to assure we don't get in an infinite loading loop.
2021-04-27 12:14:37 -04:00
799747d638
Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane.
2021-04-27 12:13:49 -04:00
4946f77f58
adding a missing migration
2021-04-26 15:11:17 -04:00
09d8c8bcba
added missing test for update_workflow_spec_category
2021-04-26 12:57:08 -04:00
21e95b106d
Merge pull request #295 from sartography/299-document-datastore
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Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
0aa3e8f586
added missing test for add_workflow_spec_category
2021-04-26 12:41:50 -04:00
047c68b2b5
Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models
2021-04-26 12:31:22 -04:00
b73c2ff1cb
Added missing test for `get_workflow_from_workflow_spec`
2021-04-26 12:00:06 -04:00
1a44f50de6
Added `standalone` argument to fix failing test.
2021-04-26 11:21:35 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
40ee20ecca
Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
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Fixes #299
2021-04-26 09:55:28 -04:00
d3d7eeb309
Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
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Fixes #299
2021-04-26 09:41:14 -04:00
7cca559747
Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests.
2021-04-26 08:58:09 -04:00
c002ef1e76
Added test for new api endpoint to get all standalone workflow_specs.
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Modified test_add_new_workflow_specification to include new standalone argument
2021-04-26 08:56:21 -04:00
54ab7bd2f6
Test and workflow for launching a standalone workflow
2021-04-26 08:53:25 -04:00
e836242f10
Added standalone argument when adding a workflow_spec
2021-04-26 08:52:12 -04:00
a17e1bfaca
When completing a form in a test, check whether workflow is standalone.
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Do not set study_id when workflow is standalone.
*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
2021-04-26 08:50:46 -04:00
6c98e8a2f4
removed duplicate code
2021-04-26 08:47:03 -04:00
077b68c1e2
When creating a workflow for a study, set the user_id to None
2021-04-26 08:46:19 -04:00
f17a9dc0f4
Modified `get_users_assigned_to_task`.
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If we are running a standalone workflow, only return the current user.
2021-04-26 08:45:08 -04:00
b6f5001687
Added methods for the 2 new api endpoints
2021-04-26 08:43:14 -04:00
1f50bdcb81
Migration script for database changes
2021-04-26 08:36:56 -04:00
22432aaf2c
study_id is no longer required for task events
2021-04-26 08:36:09 -04:00
Dan
mike cullerton
Kelly McDonald
Mike Cullerton