Commit Graph

1687 Commits

Author SHA1 Message Date
mike cullerton 8d698cf275 Added explicit config values for `FRONTEND` and `BPMN` hostname and port.
Use these new values to define `CORS_ALLOW_ORIGINS`

Removed unused `FRONTEND_AUTH_CALLBACK`
2021-05-06 15:31:33 -04:00
mike cullerton 09a395fa34 Start for ticket 230 - Get Dashboard URL 2021-05-06 14:07:21 -04:00
Dan 620b9a5188 Fixing a regression. It's critical that Spiffworkflow's box implement deepcopy, as this is used by Jinga prior to generating a word document. 2021-05-05 21:36:57 -04:00
Dan 5a79b80f32 fixes #322, do not error out deleting files that have assocaited data stores, just remove the data store. 2021-05-05 20:21:33 -04:00
Dan 7831bef050 Don't fail the sync completely when a remote file does not exist. 2021-05-05 15:59:00 -04:00
Dan 8f28970f92 Resolving an alembic conflict.
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens.  This seems to be working locally.
2021-05-04 13:39:49 -04:00
Dan Funk 8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
Irb info script #307
2021-05-04 11:40:52 -04:00
Dan Funk 50cb078390
Merge pull request #303 from sartography/feature/performance-refactor
Performance Refactor
2021-05-04 11:31:10 -04:00
Dan Funk 34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk 4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get
Add default capability to file_data_get script
2021-05-04 11:28:40 -04:00
Dan Funk 0747e2141e
Merge pull request #301 from sartography/310-task-event-timezone
310 task event timezone
2021-05-04 11:21:49 -04:00
Dan Funk d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk 81467d6a8d
Merge pull request #299 from sartography/297-filename-in-documents
Add filename to files listing.
2021-05-04 11:19:59 -04:00
Dan Funk d68f319cf7
Merge pull request #298 from sartography/316-Shield-Test-Error
Emulate checks on keyword arguments and then return. Validate only sh…
2021-05-04 11:18:36 -04:00
Dan Funk 77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
mike cullerton 7689281d68 Fixed typo. Response should be list, not dict. 2021-05-03 14:52:29 -04:00
mike cullerton 576f3a661d Removed print statement used while debugging. 2021-05-03 14:52:01 -04:00
mike cullerton c8446bfafd Mock the Protocol Builder response in my test 2021-05-03 14:51:27 -04:00
mike cullerton 804926dbac Fixed problem where WorkflowService.make_test_workflow did not add a study to the workflow_model 2021-05-01 15:55:20 -04:00
mike cullerton 9465b6408d Test and workflow for new `get_irb_info` script 2021-05-01 15:53:43 -04:00
mike cullerton 060ee5076d New script to get IRB Info for a study 2021-05-01 15:52:41 -04:00
mike cullerton 1bcf4ea02e Test and mock data for new `get_irb_info` service in ProtocolBuilderService 2021-05-01 15:23:07 -04:00
mike cullerton 22b3230243 Added service `get_irb_info` to `crc.services.protocol_builder.ProtocolBuilderService`
Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
2021-05-01 15:20:47 -04:00
Dan a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested.
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
Kelly McDonald 7608a889fb Add default capability to file_data_get
script
2021-04-30 10:11:50 -04:00
mike cullerton eb153c3ffc Fixed column definition for standalone 2021-04-29 14:29:43 -04:00
mike cullerton 24c818bf31 Added study_id to workflow_api 2021-04-29 14:29:21 -04:00
Kelly McDonald 2b9cee6b89 Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC 2021-04-29 10:25:28 -04:00
Kelly McDonald cc77a9182c Add filename to files listing.
Fixes #297
2021-04-28 10:37:14 -04:00
Kelly McDonald dc6f1cc80d Emulate checks on keyword arguments and then return. Validate only should have no side effects so the previous behavior was a bug. 2021-04-28 10:03:52 -04:00
Kelly McDonald c029dad688 Convert some datetime columns to include timezone 2021-04-28 10:00:22 -04:00
Kelly McDonald 71a63c049d Merge remote-tracking branch 'origin/dev' into dev 2021-04-27 12:16:36 -04:00
Dan 248ca6a33a Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees)
todo: Create a ticket to assure we don't get in an infinite loading loop.
2021-04-27 12:14:37 -04:00
Kelly McDonald 799747d638 Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane. 2021-04-27 12:13:49 -04:00
Dan 4946f77f58 adding a missing migration 2021-04-26 15:11:17 -04:00
mike cullerton 09d8c8bcba added missing test for update_workflow_spec_category 2021-04-26 12:57:08 -04:00
Dan Funk 21e95b106d
Merge pull request #295 from sartography/299-document-datastore
Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
mike cullerton 0aa3e8f586 added missing test for add_workflow_spec_category 2021-04-26 12:41:50 -04:00
Dan 047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
mike cullerton b73c2ff1cb Added missing test for `get_workflow_from_workflow_spec` 2021-04-26 12:00:06 -04:00
mike cullerton 1a44f50de6 Added `standalone` argument to fix failing test. 2021-04-26 11:21:35 -04:00
Mike Cullerton 39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204 2021-04-26 10:27:32 -04:00
Kelly McDonald 40ee20ecca Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
Fixes #299
2021-04-26 09:55:28 -04:00
Kelly McDonald d3d7eeb309 Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
Fixes #299
2021-04-26 09:41:14 -04:00
mike cullerton 7cca559747 Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests. 2021-04-26 08:58:09 -04:00
mike cullerton c002ef1e76 Added test for new api endpoint to get all standalone workflow_specs.
Modified test_add_new_workflow_specification to include new standalone argument
2021-04-26 08:56:21 -04:00
mike cullerton 54ab7bd2f6 Test and workflow for launching a standalone workflow 2021-04-26 08:53:25 -04:00
mike cullerton e836242f10 Added standalone argument when adding a workflow_spec 2021-04-26 08:52:12 -04:00
mike cullerton a17e1bfaca When completing a form in a test, check whether workflow is standalone.
Do not set study_id when workflow is standalone.

*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
2021-04-26 08:50:46 -04:00
mike cullerton 6c98e8a2f4 removed duplicate code 2021-04-26 08:47:03 -04:00