sartography/cr-connect-workflow
1
0
Fork 0
mirror of https://github.com/sartography/cr-connect-workflow.git synced 2025-02-22 12:48:25 +00:00
Code Issues Packages Projects Releases Wiki Activity
1,686 Commits 14 Branches 0 Tags 9 MiB
Commit Graph

1686 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
mike cullerton
8a6bef5af4 New service to get the primary workflow for a workflow_spec, using a workflow_spec_id. 
This is necessary because `primary` is a file parameter, not a workflow_spec parameter.

- you can ask a workflow file whether it is primary, but
- you cannot ask a workflow_spec for its primary workflow file

Now, you can use `workflow_service.get_primary_workflow(workflow_spec_id)`
 2021-05-12 13:51:51 -04:00
Dan
620b9a5188 Fixing a regression. It's critical that Spiffworkflow's box implement deepcopy, as this is used by Jinga prior to generating a word document. 2021-05-05 21:36:57 -04:00
Dan
5a79b80f32 fixes #322, do not error out deleting files that have assocaited data stores, just remove the data store. 2021-05-05 20:21:33 -04:00
Dan
7831bef050 Don't fail the sync completely when a remote file does not exist. 2021-05-05 15:59:00 -04:00
Dan
8f28970f92 Resolving an alembic conflict. 
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens.  This seems to be working locally.
 2021-05-04 13:39:49 -04:00
Dan Funk
8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307 
Irb info script #307
 2021-05-04 11:40:52 -04:00
Dan Funk
50cb078390
Merge pull request #303 from sartography/feature/performance-refactor 
Performance Refactor
 2021-05-04 11:31:10 -04:00
Dan Funk
34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk
4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get 
Add default capability to file_data_get script
 2021-05-04 11:28:40 -04:00
Dan Funk
0747e2141e
Merge pull request #301 from sartography/310-task-event-timezone 
310 task event timezone
 2021-05-04 11:21:49 -04:00
Dan Funk
d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk
81467d6a8d
Merge pull request #299 from sartography/297-filename-in-documents 
Add filename to files listing.
 2021-05-04 11:19:59 -04:00
Dan Funk
d68f319cf7
Merge pull request #298 from sartography/316-Shield-Test-Error 
Emulate checks on keyword arguments and then return. Validate only sh…
 2021-05-04 11:18:36 -04:00
Dan Funk
77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204 
Launch workflow outside study 204
 2021-05-04 11:16:08 -04:00
mike cullerton
7689281d68 Fixed typo. Response should be list, not dict. 2021-05-03 14:52:29 -04:00
mike cullerton
576f3a661d Removed print statement used while debugging. 2021-05-03 14:52:01 -04:00
mike cullerton
c8446bfafd Mock the Protocol Builder response in my test 2021-05-03 14:51:27 -04:00
mike cullerton
804926dbac Fixed problem where WorkflowService.make_test_workflow did not add a study to the workflow_model 2021-05-01 15:55:20 -04:00
mike cullerton
9465b6408d Test and workflow for new get_irb_info script 2021-05-01 15:53:43 -04:00
mike cullerton
060ee5076d New script to get IRB Info for a study 2021-05-01 15:52:41 -04:00
mike cullerton
1bcf4ea02e Test and mock data for new get_irb_info service in ProtocolBuilderService 2021-05-01 15:23:07 -04:00
mike cullerton
22b3230243 Added service get_irb_info to crc.services.protocol_builder.ProtocolBuilderService 
Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
 2021-05-01 15:20:47 -04:00
Dan
a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested. 
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
 2021-04-30 11:55:12 -04:00
Kelly McDonald
7608a889fb Add default capability to file_data_get 
script
 2021-04-30 10:11:50 -04:00
mike cullerton
eb153c3ffc Fixed column definition for standalone 2021-04-29 14:29:43 -04:00
mike cullerton
24c818bf31 Added study_id to workflow_api 2021-04-29 14:29:21 -04:00
Kelly McDonald
2b9cee6b89 Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC 2021-04-29 10:25:28 -04:00
Kelly McDonald
cc77a9182c Add filename to files listing. 
Fixes #297
 2021-04-28 10:37:14 -04:00
Kelly McDonald
dc6f1cc80d Emulate checks on keyword arguments and then return. Validate only should have no side effects so the previous behavior was a bug. 2021-04-28 10:03:52 -04:00
Kelly McDonald
c029dad688 Convert some datetime columns to include timezone 2021-04-28 10:00:22 -04:00
Kelly McDonald
71a63c049d Merge remote-tracking branch 'origin/dev' into dev 2021-04-27 12:16:36 -04:00
Dan
248ca6a33a Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees) 
todo: Create a ticket to assure we don't get in an infinite loading loop.
 2021-04-27 12:14:37 -04:00
Kelly McDonald
799747d638 Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane. 2021-04-27 12:13:49 -04:00
Dan
4946f77f58 adding a missing migration 2021-04-26 15:11:17 -04:00
mike cullerton
09d8c8bcba added missing test for update_workflow_spec_category 2021-04-26 12:57:08 -04:00
Dan Funk
21e95b106d
Merge pull request #295 from sartography/299-document-datastore 
Add file_data_get and file_data_set functions that can be accessed in…
 2021-04-26 12:49:46 -04:00
mike cullerton
0aa3e8f586 added missing test for add_workflow_spec_category 2021-04-26 12:41:50 -04:00
Dan
047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
mike cullerton
b73c2ff1cb Added missing test for get_workflow_from_workflow_spec 2021-04-26 12:00:06 -04:00
mike cullerton
1a44f50de6 Added standalone argument to fix failing test. 2021-04-26 11:21:35 -04:00
Mike Cullerton
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204 2021-04-26 10:27:32 -04:00
Kelly McDonald
40ee20ecca Add file_data_get and file_data_set functions that can be accessed in a bpmn script function 
Fixes #299
 2021-04-26 09:55:28 -04:00
Kelly McDonald
d3d7eeb309 Add file_data_get and file_data_set functions that can be accessed in a bpmn script function 
Fixes #299
 2021-04-26 09:41:14 -04:00
mike cullerton
7cca559747 Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests. 2021-04-26 08:58:09 -04:00
mike cullerton
c002ef1e76 Added test for new api endpoint to get all standalone workflow_specs. 
Modified test_add_new_workflow_specification to include new standalone argument
 2021-04-26 08:56:21 -04:00
mike cullerton
54ab7bd2f6 Test and workflow for launching a standalone workflow 2021-04-26 08:53:25 -04:00
mike cullerton
e836242f10 Added standalone argument when adding a workflow_spec 2021-04-26 08:52:12 -04:00
mike cullerton
a17e1bfaca When completing a form in a test, check whether workflow is standalone. 
Do not set study_id when workflow is standalone.

*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
 2021-04-26 08:50:46 -04:00
mike cullerton
6c98e8a2f4 removed duplicate code 2021-04-26 08:47:03 -04:00
mike cullerton
077b68c1e2 When creating a workflow for a study, set the user_id to None 2021-04-26 08:46:19 -04:00