7831bef050
Don't fail the sync completely when a remote file does not exist.
2021-05-05 15:59:00 -04:00
8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
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Irb info script #307
2021-05-04 11:40:52 -04:00
34759a2f3d
Merge branch 'dev' into feature/performance-refactor
2021-05-04 11:30:13 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
81467d6a8d
Merge pull request #299 from sartography/297-filename-in-documents
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Add filename to files listing.
2021-05-04 11:19:59 -04:00
804926dbac
Fixed problem where WorkflowService.make_test_workflow did not add a study to the workflow_model
2021-05-01 15:55:20 -04:00
22b3230243
Added service `get_irb_info` to `crc.services.protocol_builder.ProtocolBuilderService`
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Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
2021-05-01 15:20:47 -04:00
a719cf4bf9
When retrieving the study, only update the status of underlying workflows if specifically requested.
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Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
24c818bf31
Added study_id to workflow_api
2021-04-29 14:29:21 -04:00
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
cc77a9182c
Add filename to files listing.
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Fixes #297
2021-04-28 10:37:14 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
077b68c1e2
When creating a workflow for a study, set the user_id to None
2021-04-26 08:46:19 -04:00
f17a9dc0f4
Modified `get_users_assigned_to_task`.
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If we are running a standalone workflow, only return the current user.
2021-04-26 08:45:08 -04:00
b6f5001687
Added methods for the 2 new api endpoints
2021-04-26 08:43:14 -04:00
cf051a7d4f
Merge branch 'dev' into 277-Document-pane
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# Conflicts:
# crc/api/file.py
2021-04-21 14:09:44 -04:00
e2197ddab9
Changes to support the frontend data pane
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fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
91e80d01bc
Added delete_files argument to the workflow_processor reset method.
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Added code to delete the files when delete_files is True.
2021-04-15 11:25:58 -04:00
6427a54d74
Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary.
2021-04-09 08:40:58 -04:00
dcb4e7b736
fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig.
2021-04-02 17:58:27 -04:00
116bf5e7aa
Merge branch 'dev' into 263-optimize-dashboard
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# Conflicts:
# crc/services/study_service.py
2021-03-31 10:20:33 -04:00
9084866015
Update error message - it may be that we should spend a bit and see if we can make the Box error
2021-03-31 10:17:08 -04:00
60f5be1aef
Check in - pending change from @cullerton
2021-03-30 12:10:49 -04:00
b5d4df595f
Merge pull request #271 from sartography/master-workflow-status-messages-222
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Master workflow status messages 222
2021-03-26 20:52:24 -04:00
ded11ddd82
fixing a code smell
2021-03-26 20:25:34 -04:00
f1ca44a0e1
Add primitive cache on the fileservice is_review, halves the time of loading the list on the primary dashboard
2021-03-23 10:17:48 -04:00
a201e49d21
The master workflow now generates a dictionary of dictionaries, rather than a dictionary of strings.
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Each entry in status is a dictionary with 'status' and 'message' keys.
We updated the StudyService._update_status_of_workflow_meta method to accommodate the master workflow changes.
Changed the order of some if statements so we move forward while we have good data, and run all the error states at the end.
Added some comments to explain the cascading if statements
We changed the names of private methods to begin with one underscore, so they work in the test environment.
Changed some internal calls to accommodate the underscore change.
2021-03-22 17:46:39 -04:00
938079cf59
Lowered count ceiling to 100, from 1000. This significantly increased validation time, from about 3 minutes to about 10 seconds.
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Changed ApiError call to from_task, instead of from_workflow_exception.
2021-03-17 14:52:19 -04:00
529bfc34b3
We now check for an infinite loop during validation.
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This happened when testing for a Department Chair in a workflow.
Our mocked data for study_info script did not have a Department Chair
2021-03-16 13:35:51 -04:00
c05b879dd4
We want to modify the master workflow so that it returns both a status, and a message explaining the status for each workflow.
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I.e., from status = {'ids_full_submission': 'required',
'enter_core_info': 'disabled',
...}
to status = {'ids_full_submission': {'status': 'required', 'message': 'required because...'},
'enter_core_info': {'status': 'disabled', 'message': 'disabled because...'},
...}
Modified study_service.__update_status_of_workflow_meta to accommodate this change.
2021-03-16 12:09:42 -04:00
14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
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Bug/243 complete all
2021-03-14 12:34:55 -04:00
0da07675b7
Merge pull request #258 from sartography/study-associated-email-207-223
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Study associated email 207 223
2021-03-14 12:34:19 -04:00
6f80d816cd
My privous efforts didn't take into account the fact that we use dot notation in field names.
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I've re-worked the workflow form endpoint, so that it only accepts the data that should be in the form, and ignores any other values that come back from the front end. It seems Formly has some bugs that were introducing confusing information, and I want everything to behave consistently.
I had to re-work some of the tests, which were relying on an ability to set data through a form post without having a corresponding form to do so.
2021-03-14 12:20:39 -04:00
15c64c862e
Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
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this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
1000b22a3b
Don't raise errors on non-ready tasks that calculate a title, the information may not be avaiable yet.
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Also Allow autocomplete-num as a valid field property.
2021-03-12 15:40:23 -05:00
e7c78c8d0e
Merge branch 'dev' into study-associated-email-207-223
2021-03-11 12:38:47 -05:00
e58f1dc484
Remove unused mails service
2021-03-11 11:56:18 -05:00
67697b5076
Lots of changes!
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Email Script:
- The email script now accepts 3 keyword arguments; subject, recipients, and cc.
- Subject and recipients are required.
- Recipients (and cc) can be an email address or list of addresses.
- You can use the string 'associated' in place of an email address, in which case we look up the users associated with a study that have send_email set to True.
- Moved some helper methods to email_service.
Email Service:
- Added cc argument
- Added helper methods previously in email script.
- Modified get_rendered_content to accept message and data directly. Previously, we passed in the task and grabbed them from there. Now we can use the method outside a task.
2021-03-11 11:32:21 -05:00
d250bac32e
Merge remote-tracking branch 'origin/dev' into dev
2021-03-10 10:59:24 -05:00
2ed825aef3
Fixes problem with swtiching users fixes #237
2021-03-10 10:59:15 -05:00
eaf52a21ca
Merge pull request #260 from sartography/bug/delete_study
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Allows us to delete a study even if there are emails, and associated …
2021-03-09 13:51:25 -05:00
80ff8a6212
Allows us to delete a study even if there are emails, and associated study users connected to that study.
2021-03-09 13:31:26 -05:00
576aebab19
Sometimes a workflow can be completely broken and unloadable. For instance, it starts off with a engine step / script task that will not execute. So the failure happens the second it is processed. When calling reset on a workflow, we should catch the failure, and reset the workflow, so we aren't trapped in an unrecoverable state.
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To do so, I changed the WorkflowProcessor's reset method to be static, it will try to instantiate the current workflow and execute a cancel_notify event, but if that fails, it will continue and always return a new workflow processor using the latest spec.
2021-03-09 11:52:55 -05:00
36dcc58705
Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev
2021-03-08 14:00:14 -05:00
291216e081
Fixing a bug that prevented proper evaluation of a enum field where the default value was null or empty.
2021-03-08 14:00:03 -05:00
f883eb2bbe
We now include field.id in the ApiError message for hidden and default validation. (The field must have a default value or value expression)
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While working on this ticket I found a logic error in the test. I expected both default_value and value_expression. It turns out the default_value is always there, it's just null if we don't set it.
Modified the existing test for hidden and required, and added tests to make sure my passing logic is now correct.
2021-03-04 10:42:13 -05:00
9e758c57d3
Merge branch 'dev' into bug/225_enum_lookup_same_field_name
2021-03-02 14:15:58 -05:00
572eb3457a
Merge pull request #252 from sartography/customer-error-messages-192
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Customer error messages 192
2021-03-02 13:45:38 -05:00
c8f5a44050
adding a warning in the logger so we can see when expensive calls are made to rebuild searches for enumerations. But all looks good.
2021-03-02 12:21:51 -05:00
06dedd8a32
Add short_title to study, change update_study task to use kw arguments and add the short_title to the update_study script
2021-03-02 10:03:53 -05:00
Dan
mike cullerton
Kelly McDonald
Mike Cullerton