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894 Commits

Author SHA1 Message Date
mike cullerton
e1532a90c9 New api endpoint for restarting a workflow. Unsure if I needed the responses section. **Dan, can you check this?** 
Also, removed clear_data and reload_spec as parameters for standard get workflow endpoint.
 2021-01-19 15:00:39 -05:00
mike cullerton
6a9e6d3570 Restart workflow without form data. Committing so Dan can check it out 2021-01-14 15:32:14 -05:00
Kelly McDonald
cf7990ce85 Refactor for better readability due to code smell test 2021-01-12 08:54:32 -05:00
Kelly McDonald
e14b896225 Add documentation 2021-01-11 09:31:08 -05:00
Kelly McDonald
f282a9ef73 Make sure that top_level_workflow is transferred over, also include reference files in the list of files to sync 
We may want to revisit this because I used a 'Magic' workflow_ref_id of 'REFERENCE_FILES' as a special case so I could re-use most of what I already had. This works well, but we may want to structure it different.
 2021-01-11 09:21:44 -05:00
Dan
336c093bf8 Catch errors when building enumeration lists. 2021-01-08 15:15:24 -05:00
Dan
26655b26d3 merging in dev, and fixing a failing test from dev. 2021-01-08 14:42:13 -05:00
Dan Funk
9118517995
Merge pull request #220 from sartography/prevent-duplicate-template-upload-111 
Users cannot upload a workflow_spec_file that already exists. We rais…
 2021-01-08 13:55:19 -05:00
Dan Funk
be288ae048
Merge pull request #219 from sartography/fix-api-call-missing-fieldname-143 
Fixed ApiError call. Now includes task_id and task_name.
 2021-01-08 13:46:26 -05:00
Dan Funk
81fe3e7957
Merge pull request #218 from sartography/is-file-uploaded-143 
Ticket 143. Test whether file is uploaded.
 2021-01-08 13:45:24 -05:00
Dan
72a73c1fc4 Allow for synch to work even if the local set of workflow specifications are completely empty. 2021-01-08 13:23:01 -05:00
mike cullerton
d274813ae5 We now check form field IDs so they play well with Python and Javascript. 2021-01-07 11:10:31 -05:00
mike cullerton
c9a4a9685f Users cannot upload a workflow_spec_file that already exists. We raise an error that is displayed on the fron end. 2021-01-04 15:47:45 -05:00
mike cullerton
0ae4448fbe Fixed ApiError call. Now includes task_id and task_name. 2021-01-04 13:48:34 -05:00
Dan
b0dc834682 Don't error out on autocomplete_num 2021-01-04 13:41:57 -05:00
mike cullerton
0c47d09972 Ticket 143. Test whether file is uploaded. 2021-01-04 10:53:21 -05:00
Dan Funk
386feddeed
Merge pull request #214 from sartography/validate-hide-expression-103 
Modified study_info do_task_validate_only so that we take the default…
 2020-12-31 10:53:27 -05:00
Dan Funk
cf106fb9cd
Merge pull request #216 from sartography/place-study-on-hold-20 
Studies can now be put on hold in the dashboard. We were overriding t…
 2020-12-31 10:53:03 -05:00
mike cullerton
ede5df4df5 Studies can now be put on hold in the dashboard. We were overriding the status in StudyModel.update_from_protocol_builder. 2020-12-30 17:49:59 -05:00
Dan
efdbbcbc72 StudyInfo sometimes returns arrays of items, each item in the array should be coverted to a Box dictionary if possible. 2020-12-30 14:51:51 -05:00
mike cullerton
f29429f0d0 Modified study_info do_task_validate_only so that we take the default path in ind_update workflow. 2020-12-30 10:04:10 -05:00
Dan
e5a38874f6 A hard or soft reset should also cause a 'cancel_notify' which will kick off any CANCEL events. If this happens during 
a hard or soft reset, and an error is thrown trying to fulfil a cancel event, the reset should still fire.
Sending emails still had a number of issues correctly parsing it's arguments.  This is corrected.
 2020-12-29 18:05:13 -05:00
Dan
c288a8a2bc Merge branch 'dev' into check-field-type#143 2020-12-29 11:11:43 -05:00
mike cullerton
7938ac8eed We now assure each form field has a field type. Modified populate_form_with_random_data, added check at beginning of form field loop. 2020-12-28 18:02:16 -05:00
Dan
6cfce839c1 Validation now assures that we won't encounter errors when generating navigation lists. 
Fixing workflow sync paths that were incorrect.
Repairing a suddenly failing test in files, that just don't make no sense.
Bumping spiffworkflow that contains a fix for issue #155
 2020-12-28 17:33:38 -05:00
Dan
1f9bf72c59 Merge branch 'dev' into bug/navigation 2020-12-14 11:46:44 -05:00
Dan Funk
4268d0f482
Merge pull request #208 from sartography/152-workflow-spec-pull 
152 workflow spec pull
 2020-12-14 11:35:06 -05:00
Dan
bcb78de225 Merge branch 'dev' into bug/navigation 2020-12-14 11:33:51 -05:00
Dan Funk
e54404e424
Merge pull request #205 from sartography/test-email-script 
Test email script
 2020-12-14 11:28:14 -05:00
Dan
6bf24cc438 fixing some failing tests related to changes in the underlying spiffworkflow library. 2020-12-14 11:27:38 -05:00
Dan
b62a9c7074 Merge remote-tracking branch 'origin/dev' into bug/navigation 2020-12-14 10:40:21 -05:00
Dan
fd4b881416 upgrading the pip libraries. 2020-12-14 10:30:10 -05:00
Kelly McDonald
ee3ee9fd4a Added tests to cover most of the use cases and code, and a bunch of stuff to make the mocks happy 2020-12-14 10:27:40 -05:00
Dan
02ea414b94 Additional fixes to Navigation to allow a nested navigation structure. 2020-12-14 10:07:19 -05:00
mike cullerton
7defc2b02f Tests for uid in logs. Currently we test for uid in a response. This covers ApiError. 
Currently, we don't have a test for Sentry. Unsure how to do this.
Also added a script, service and test workflow to help. (Also to learn about adding a script and service.)
 2020-12-11 17:47:53 -05:00
mike cullerton
856fe445b0 Added user.uid to ApiError and Sentry logging 2020-12-11 16:26:03 -05:00
Kelly McDonald
adc4dc4453 redid the api a bit so that nothing was using open security - added a new endpoint for getting a workflow spec that uses the alternate API_TOKEN security and leave the original endpoint as it was. 2020-12-11 12:03:41 -05:00
Kelly McDonald
55e6f5b753 refactored calls into a service - forgot to add actual service 2020-12-11 11:42:00 -05:00
Kelly McDonald
3a1160efac refactored calls into a service 2020-12-11 11:41:32 -05:00
Kelly McDonald
9eea26e019 add workflow_sync test 2020-12-11 08:34:59 -05:00
Kelly McDonald
993c7bc76e fixed error on api.yml from search / replace 2020-12-11 08:29:37 -05:00
Kelly McDonald
3f56dfe484 Move all workflow sync stuff into new file 
Make changes to api naming scheme
add some error checking around endpoints for missing/invalid endpoints
 2020-12-10 10:46:23 -05:00
Kelly McDonald
a8203ed01d save changes before refactor 2020-12-10 10:06:21 -05:00
Kelly McDonald
e377a05dea Add some punctuation 2020-12-09 13:50:52 -05:00
Kelly McDonald
c57b17df1e Add a robust way of adding an API key, update examples and documentation for swagger API and add the ability to completely sync the local system from the remote system. 2020-12-09 12:13:17 -05:00
mike cullerton
32c5060a31 No longer use eval on the email address. It is already parsed. 
Tests for single and multiple emails, and email error checking.
Still need to figure out how to implement multiple emails.
 2020-12-09 12:11:46 -05:00
Kelly McDonald
0e1aa59fa1 Make a change to make sure that if there is a new file locally that is not present remotely when we pull from the remote, the new local file gets deleted. 
Also: add several things to the requirements.txt that should have been there in the first place.
 2020-12-08 13:42:01 -05:00
mike cullerton
730d0ca18f Email script now uses an email address instead of a UVA LDAP user_id. 2020-12-07 16:23:41 -05:00
Kelly McDonald
44c72115ae Make sure we get the file we intended 2020-12-07 08:50:20 -05:00
Kelly McDonald
f26a8615a4 Get more file details so we can fill out everything locally and also add a method to download the file by md5_hash 2020-12-07 08:49:38 -05:00