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cr-connect-workflow
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1638 Commits

Author SHA1 Message Date
mike cullerton 22b3230243 Added service `get_irb_info` to `crc.services.protocol_builder.ProtocolBuilderService` 
Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
 2021-05-01 15:20:47 -04:00
Kelly McDonald 71a63c049d Merge remote-tracking branch 'origin/dev' into dev 2021-04-27 12:16:36 -04:00
Dan 248ca6a33a Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees) 
todo: Create a ticket to assure we don't get in an infinite loading loop.
 2021-04-27 12:14:37 -04:00
Kelly McDonald 799747d638 Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane. 2021-04-27 12:13:49 -04:00
Dan 4946f77f58 adding a missing migration 2021-04-26 15:11:17 -04:00
Dan Funk 21e95b106d
Merge pull request #295 from sartography/299-document-datastore 
Add file_data_get and file_data_set functions that can be accessed in…
 2021-04-26 12:49:46 -04:00
Dan 047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
Kelly McDonald 40ee20ecca Add file_data_get and file_data_set functions that can be accessed in a bpmn script function 
Fixes #299
 2021-04-26 09:55:28 -04:00
Kelly McDonald d3d7eeb309 Add file_data_get and file_data_set functions that can be accessed in a bpmn script function 
Fixes #299
 2021-04-26 09:41:14 -04:00
Dan dd7c5fd1c1 Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files. 2021-04-23 16:16:19 -04:00
Dan Funk 63dcb4599e
Merge pull request #292 from sartography/277-Document-pane 
277 document pane
 2021-04-21 17:28:41 -04:00
Dan cf051a7d4f Merge branch 'dev' into 277-Document-pane 
# Conflicts:
#	crc/api/file.py
 2021-04-21 14:09:44 -04:00
Dan ecff7d20d3 Adding a test for the new endpoint and cleaning up the API documenation 2021-04-21 14:00:19 -04:00
Kelly McDonald 19e94da6b6 Fix slight bug in expansion code, 
a non-expanded node was causing all parent levels to not expand.
 2021-04-20 11:11:11 -04:00
Kelly McDonald e2197ddab9 Changes to support the frontend data pane 
fixes #277 and requires frontend branch 277-document-pane
 2021-04-20 08:12:27 -04:00
Dan Funk 277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142 
Auto set primary bpmn #142
 2021-04-16 13:36:02 -04:00
Dan Funk 8fa79f1285
Merge pull request #289 from sartography/document-deletion-on-restart-279 
Document deletion on restart #279
 2021-04-16 13:33:11 -04:00
mike cullerton fdaa069886 Added test for automatically setting the primary bpmn for a workflow spec 2021-04-15 13:29:42 -04:00
mike cullerton 8953637466 moved the minimal_bpmn method to base_test 2021-04-15 13:28:03 -04:00
mike cullerton 2374400542 Automatically set the first workflow for a workflow_spec to primary 2021-04-15 12:39:12 -04:00
mike cullerton 2d4a68da6d Added test for deleting files on restart. 2021-04-15 11:30:17 -04:00
mike cullerton 69396f9888 Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow 2021-04-15 11:28:35 -04:00
mike cullerton 91e80d01bc Added delete_files argument to the workflow_processor reset method. 
Added code to delete the files when delete_files is True.
 2021-04-15 11:25:58 -04:00
mike cullerton 3332b9c7c0 Added delete_files argument to the restart_workflow api method, and pass it along to WorkflowProcessor.reset 2021-04-15 11:23:20 -04:00
mike cullerton 4615649938 Added delete_files argument to the workflow restart api endpoint 2021-04-15 11:21:51 -04:00
Kelly McDonald 949f3be403 give an endpoint to return all files associated with a study 2021-04-12 12:23:33 -04:00
Dan 069de83bd5 forgot to include a bpmn for the tests. 2021-04-09 09:02:43 -04:00
Dan 6427a54d74 Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary. 2021-04-09 08:40:58 -04:00
Dan 99394ef953 Fix to spiffworkflow. 2021-04-08 16:11:49 -04:00
Dan 41310b6879 Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts. 2021-04-08 13:42:17 -04:00
Dan Funk 611c72f431
Merge pull request #284 from sartography/delete-uploaded-file-script-283 
Delete uploaded file script #283
 2021-04-08 12:42:30 -04:00
Dan Funk b0896548f2
Merge pull request #285 from sartography/dependabot/pip/deploy/urllib3-1.26.4 
Bump urllib3 from 1.26.3 to 1.26.4 in /deploy
 2021-04-08 12:35:30 -04:00
dependabot[bot] e3302c56ea
Bump urllib3 from 1.26.3 to 1.26.4 in /deploy 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.3 to 1.26.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.3...1.26.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-04-06 18:08:27 +00:00
mike cullerton 5155db89f9 Added test for deleting multiple files. 
Fixed existing tests to accommodate changes to test workflow bpmn file
 2021-04-05 15:13:32 -04:00
mike cullerton 70fbd49aab Modified my test workflow so it works better for testing multiple file deletions 2021-04-05 15:12:14 -04:00
mike cullerton f8428378e2 You can now delete a document or list of documents. 
Also, refactored the fancy bits into `process_document_deletion`
 2021-04-05 15:11:06 -04:00
mike cullerton 33cef2bd2a Added tests for failing conditions 2021-04-05 13:19:29 -04:00
mike cullerton c6b1fd4e52 Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table. 2021-04-05 13:18:56 -04:00
mike cullerton 61f37ff894 Changed the order of imports so I could debug a failing test 2021-04-05 13:16:43 -04:00
mike cullerton f0f5cff8d7 Added some checks to do_task to look for valid irb_doc_code and whether or not we found a file 
Added code for do_task_validate
 2021-04-05 13:15:09 -04:00
Dan 4fd8fd13f8 Remove approvals from the study_info script. It was broken, and isn't really possible in this way anymore 2021-04-05 12:52:23 -04:00
Dan 501487b31c Assure we convert to box for validations as well, and test the bloodly snot out of this. 2021-04-05 12:47:50 -04:00
Dan 727aa72e18 Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks. 2021-04-05 11:31:06 -04:00
mike cullerton 9317e49e65 Merge branch 'dev' into delete-uploaded-file-script-283 2021-04-05 10:40:33 -04:00
Kelly McDonald 9f66a938f2 Update pip 2021-04-05 10:19:29 -04:00
mike cullerton d81497f8cb Test and workflow for new script to delete IRB documents 2021-04-05 08:55:41 -04:00
mike cullerton 0eb6291740 Script to delete an IRB document. Takes an `irb_document` argument. 
Deletes all files associated with the workflow with that IRB document code
 2021-04-05 08:55:02 -04:00
Dan Funk 7ef43fd477
Merge pull request #279 from sartography/263-optimize-dashboard 
263 optimize dashboard
 2021-04-02 18:54:56 -04:00
Dan 9dca220089 updating package.lock 2021-04-02 17:58:43 -04:00
Dan dcb4e7b736 fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig. 2021-04-02 17:58:27 -04:00