Commit Graph

508 Commits

Author SHA1 Message Date
mike cullerton ede5df4df5 Studies can now be put on hold in the dashboard. We were overriding the status in StudyModel.update_from_protocol_builder. 2020-12-30 17:49:59 -05:00
Dan 96739d99c4 Fixing a failing test because new logic was catching a different error. 2020-12-29 11:14:40 -05:00
Dan c288a8a2bc Merge branch 'dev' into check-field-type#143 2020-12-29 11:11:43 -05:00
mike cullerton 052ee40238 Cleanup from test email script changes. Removed commented piece of code containing my private email address. 2020-12-28 18:05:47 -05:00
mike cullerton 06318c87b1 Test and workflow for changes to workflow_service. The workflow does not have a field type. We look for evidence of raised exception in data of response. 2020-12-28 18:03:59 -05:00
Dan 6cfce839c1 Validation now assures that we won't encounter errors when generating navigation lists.
Fixing workflow sync paths that were incorrect.
Repairing a suddenly failing test in files, that just don't make no sense.
Bumping spiffworkflow that contains a fix for issue #155
2020-12-28 17:33:38 -05:00
Dan 1f9bf72c59 Merge branch 'dev' into bug/navigation 2020-12-14 11:46:44 -05:00
Dan Funk 4268d0f482
Merge pull request #208 from sartography/152-workflow-spec-pull
152 workflow spec pull
2020-12-14 11:35:06 -05:00
Dan bcb78de225 Merge branch 'dev' into bug/navigation 2020-12-14 11:33:51 -05:00
Dan Funk e54404e424
Merge pull request #205 from sartography/test-email-script
Test email script
2020-12-14 11:28:14 -05:00
Dan 6bf24cc438 fixing some failing tests related to changes in the underlying spiffworkflow library. 2020-12-14 11:27:38 -05:00
Dan b62a9c7074 Merge remote-tracking branch 'origin/dev' into bug/navigation 2020-12-14 10:40:21 -05:00
Dan 082dee46e0 fixing some failing tests. 2020-12-14 10:37:35 -05:00
Kelly McDonald d8ac20b1c3 I added a second file to 'random_fact' test workflow, so another test was expecting 2 files in it after adding a new file, but there were 3 -
Nothing to see here - move along
2020-12-14 10:37:16 -05:00
Dan 38a6fa782d Fixing the email script test. 2020-12-14 10:29:53 -05:00
Kelly McDonald ee3ee9fd4a Added tests to cover most of the use cases and code, and a bunch of stuff to make the mocks happy 2020-12-14 10:27:40 -05:00
Dan 02ea414b94 Additional fixes to Navigation to allow a nested navigation structure. 2020-12-14 10:07:19 -05:00
mike cullerton 7defc2b02f Tests for uid in logs. Currently we test for uid in a response. This covers ApiError.
Currently, we don't have a test for Sentry. Unsure how to do this.
Also added a script, service and test workflow to help. (Also to learn about adding a script and service.)
2020-12-11 17:47:53 -05:00
Kelly McDonald 3a1160efac refactored calls into a service 2020-12-11 11:41:32 -05:00
Kelly McDonald 9eea26e019 add workflow_sync test 2020-12-11 08:34:59 -05:00
mike cullerton 32c5060a31 No longer use eval on the email address. It is already parsed.
Tests for single and multiple emails, and email error checking.
Still need to figure out how to implement multiple emails.
2020-12-09 12:11:46 -05:00
mike cullerton 730d0ca18f Email script now uses an email address instead of a UVA LDAP user_id. 2020-12-07 16:23:41 -05:00
Sartography 8ba1e90f9a Test for ticket 153 to include user in error messages 2020-12-07 08:39:00 -05:00
Sartography 750a202e99 Test and BPMN files for testing email script 2020-12-06 10:22:32 -05:00
Dan 93b12a8e82 updates using new navigation from spiff workflow's navigation branch, all tests passing. 2020-12-04 17:56:12 -05:00
Dan Funk e15130e09c
Merge pull request #203 from sartography/151-data-store-exclusive-branch-expression
Added the ability to use the custom functions within a decision/flow …
2020-12-01 14:44:27 -05:00
Kelly McDonald 94662c560e Added the ability to use the custom functions within a decision/flow coming off of an exclusive join
Altered previous test to test this feature
2020-12-01 09:13:12 -05:00
mike cullerton 73e01b347b Ticket #105. Verify End Event Documentation. Added explicit call to _process_documentation at end of crc.services.workflow_service.test_spec for the end event 2020-11-24 16:51:18 -05:00
mike cullerton a6f9e27ca3 test and bpmn files for ticket #105 (verify end event) 2020-11-24 10:47:20 -05:00
Dan Funk b8a91a513b
Merge pull request #196 from sartography/128-data-store
128 data store
2020-11-18 18:55:33 -05:00
Dan 70c621fe87 fixing the bpmn to use cancel, and pulling in pudates to the spiffworkflow branch. 2020-11-18 16:39:09 -05:00
Dan b83ab1bcd1 Move data store base into its own file. 2020-11-18 15:34:50 -05:00
mike cullerton d198f124d7 Committing a merge from dev 2020-11-18 15:33:44 -05:00
Dan c62b73a539 drop some of the test-only api endpints and rework the tests so they aren't needed 2020-11-18 15:04:36 -05:00
Kelly McDonald 72ade3c367 Add crosstalk test 2020-11-17 10:29:49 -05:00
Kelly McDonald e9979efb0d Add some tests 2020-11-17 09:33:29 -05:00
mike cullerton a2dc3c4812 Use Cancel Event
New title 'New Title'
2020-11-16 09:59:22 -05:00
Kelly McDonald 9a4d167dcd Add in api changes 2020-11-11 09:44:58 -05:00
Kelly McDonald 3ba11f5e6b add user_data_get/set and alter test so that it ensures that we don't grab study_data stuff from the user_data calls
change the test to mock up the user.
2020-11-10 10:32:37 -05:00
Kelly McDonald 92595e3c42 base_test didn't 'know' about the DataStoreModel so it wasn't creating the data_store table, causing a lot of problems after the initial setup/teardown 2020-11-10 09:33:54 -05:00
Kelly McDonald 69fe55aa56 Add mostly-working elements of the data-store, compare with dev to see why db is not working after running tests 2020-11-10 08:24:17 -05:00
Kelly McDonald 245124779e Add mostly-working elements of the data-store, compare with dev to see why db is not working after running tests 2020-11-10 08:21:46 -05:00
Kelly McDonald e598994d34 Change the study_sponsors script so that we can actually call it :
var = study_info('sponsors')

to keep it more in line with other scripts that we have
2020-11-05 10:31:47 -05:00
mike cullerton a78af4eab8 Run cancel task during interrupt. Currently this uses Signal event. We may change this to the Cancel event. 2020-11-04 14:37:53 -05:00
Kelly McDonald 8b23cdc05c commit changes before switching branches 2020-10-09 08:46:14 -04:00
Dan Funk b2aede2b8d Glob on windows seems to return directories where in linux it does not, so now assuring we don't try to add files from the sub-directory. 2020-10-05 17:35:35 -04:00
Dan Funk 014a4d9757 Fixing a failing test and updating the personnel. 2020-09-02 08:24:48 -04:00
Dan Funk b544334f45 1. Updating Personnel BPMN diagram to debug some issues.
2. Disabling the token timeout for now, to see if this corrects the issues Alex is having with lost work.
3. Raising more thoughtful error messages for unknown lookup options.
4. Providing better validation of default values and injecting the correct value for defaults related to enum lists of all types.
5. Bumping Spiffworkflow library which contains some better error messages and checks.
2020-09-01 15:58:50 -04:00
Dan Funk 1052dff549 Merge remote-tracking branch 'origin/dev' into feature/python_eval 2020-08-27 14:33:16 -04:00
Dan Funk b39fd73bc0 fixing a failing test due to changes in the master bpmn for CRC 2020-08-27 14:06:03 -04:00
Dan Funk 5dacc46600 Adding some additional bpmns from Staging server to include in tests. 2020-08-27 14:00:45 -04:00
Dan Funk 53d09303d8 Validating that field properties are valid - they must exist as constants on the Task model.
Making all the lookup field names consistent.
Fixing the lookup service which was failing at times trying to find the correct field to use for building the lookup table.
Updating validation to check for additional fields and properties.
When connexion level errors occur, wrapping it in an API Error to be consistent.
2020-08-27 14:00:14 -04:00
Dan Funk 23fd1fbfa0 Removing a rogue file. 2020-08-25 11:15:43 -04:00
Dan Funk d31fd47837 Merge branch 'dev' into feature/python_eval 2020-08-25 11:08:42 -04:00
Aaron Louie 8dcb598a24 Adds unit test for ProtocolBuilderService.get_sponsors 2020-08-25 11:08:13 -04:00
Dan Funk 5be35e8bab Adding a study sponsors script to return details about study sponsors 2020-08-25 10:30:46 -04:00
Aaron Louie 182e375fdc Adds a test for string manipulation 2020-08-21 13:46:10 -04:00
Aaron Louie 4dc98a6b6b Injects current user into task data. 2020-08-21 13:34:37 -04:00
Dan Funk 66e49a347a Minor tweaks to the eval endpoint, which should take both the expression and the data as one data structure. 2020-08-20 16:13:48 -04:00
Dan Funk 7f60a19d55
Merge pull request #189 from sartography/feature/documents_publishing
Update github routines to use branches
2020-08-17 15:52:47 -04:00
Dan Funk 8f5488d910 Don't raise an error when validating workflows that use the ldap script. 2020-08-17 15:45:37 -04:00
Dan Funk 35b1b20960 Merge remote-tracking branch 'origin/dev' into feature/documents_publishing 2020-08-17 15:19:24 -04:00
Dan Funk d4c5e297cc Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint 2020-08-17 15:09:11 -04:00
Dan Funk 32d47c1417 Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint 2020-08-17 15:08:44 -04:00
Dan Funk c09441d019 Merge branch 'dev' into fix/delete_workflow_endpoint 2020-08-17 15:07:58 -04:00
Dan Funk dbd0dbf608 mend 2020-08-17 14:56:24 -04:00
Dan Funk 85ad477b2b Some minor cleanup on the study status and automatic events. I wanted to avoid having one database model automatically generating other database models as a side effect. The study service now has full responsiblity to recording study events.
To help in running tests, adding __init__.py methods to all the test directories.
2020-08-17 14:56:00 -04:00
Carlos Lopez 2bd906e96d Update github routines to use branches 2020-08-14 11:04:22 -06:00
Carlos Lopez 4f05d99cf0 Fixing typo 2020-08-14 08:48:08 -06:00
Carlos Lopez 369fe4bb35 Automatic events refactoring 2020-08-14 08:36:46 -06:00
Carlos Lopez aa010272cc Automatic event creation in study creation 2020-08-14 08:36:10 -06:00
Dan Funk c57ac6d302
Merge pull request #185 from sartography/feature/107_current_user_info
calling ldap with no argument will return information about the curre…
2020-08-14 09:18:10 -04:00
Dan Funk 08c24b7441
Merge pull request #184 from sartography/PMI_fix
Pmi fix
2020-08-14 09:17:58 -04:00
Dan Funk c12e2b97f3 calling ldap with no argument will return information about the current user. 2020-08-13 21:09:52 -04:00
Dan Funk 1a963cf940 Merge branch 'dev' into PMI_fix 2020-08-13 20:49:45 -04:00
Dan Funk 29f53e763c fixing other tests realted to lookups. 2020-08-13 20:27:51 -04:00
Dan Funk e29134a019 fixing a few tests realted to stop words. 2020-08-13 18:35:24 -04:00
Dan Funk 32d1036041 Cleaning up the tests. 2020-08-13 18:15:10 -04:00
Dan Funk 9a5c1d7cfb I may have finally wrapped my head around full text search in python. Now properly using an index based on simple rather than english dictionary which has far fewer stop words and stemming processes and plays much better to the type ahead search we are trying to provide.
Stop words are no longer excluded, so "other" is a valid search and gets a result.
2020-08-13 18:13:41 -04:00
Kelly McDonald 7bfcdd53cd Merge branch 'dev' into cr-workflow-108 2020-08-12 10:50:19 -04:00
Kelly McDonald c4a15be90c Change dmn files to python standard,
NB: this means mostly false=>False and true=>True

We may have to decide if we want to add false and true as extensions in the python namespace.
2020-08-12 10:48:59 -04:00
Aaron Louie 9a31d591ae Adds user uid and cascades study event in study model. Fixes migration to properly downgrade enums. 2020-08-12 10:13:23 -04:00
Carlos Lopez 79c14ad23c Unlinking file from workflow instead of trying to delete it 2020-08-10 22:23:20 -06:00
Carlos Lopez cef7c48be2 Adding tests 2020-08-10 21:18:41 -06:00
Kelly McDonald 623ecbae8e Add IRB test 2020-08-07 09:59:53 -04:00
Kelly McDonald 1ab765b50b Add test for PMI problem 2020-08-06 10:29:14 -04:00
Aaron Louie 2846bf9451 Fleshes out fake PB response, so workflows that pull from PB actually trigger validation errors 2020-08-04 15:50:29 -04:00
Carlos Lopez 50b207307a Merge branch 'dev' into feature/update_study_status_latest 2020-07-31 14:26:24 -06:00
Carlos Lopez 4fcba113b8 Fixing tests 2020-07-31 11:49:04 -06:00
Aaron Louie 864fd0ad40 Merge branch 'dev' into feature/admin_impersonations 2020-07-31 13:28:56 -04:00
Aaron Louie c8881cbf91 Merge branch 'dev' into feature/approvals_dashboard_prototype 2020-07-31 12:17:22 -04:00
Carlos Lopez 5d23223e51 New study status update 2020-07-30 21:03:11 -06:00
Aaron Louie 73699e66bd Merge branch 'dev' into feature/admin_impersonations 2020-07-30 17:36:20 -04:00
Dan Funk 9704cbcb26 Modifications to the ldap scripts to bring them back in line with what Kelly is doing with the evaluation process. 2020-07-30 13:35:20 -04:00
Aaron Louie f8944da31f Merge branch 'dev' into feature/admin_impersonations 2020-07-30 13:01:46 -04:00
Aaron Louie faba0f55ab Adds AdminSession model and refactors impersonation methods to use it. 2020-07-30 12:40:53 -04:00
Dan Funk a6ec0c92c7 Merge remote-tracking branch 'origin/dev' into cr-connect-106-augment-eval-methods 2020-07-30 11:38:47 -04:00
Dan Funk 44deee12de Merge branch 'dev' into feature/improved_task_event_api 2020-07-30 11:28:52 -04:00
Dan Funk 37d1ba5d5a
Merge pull request #160 from sartography/feature/ldap_lookup_script
Ldap lookup script
2020-07-30 11:27:38 -04:00
Dan Funk bf4d882519 Merge branch 'dev' into feature/ldap_lookup_script 2020-07-30 11:19:24 -04:00