Aaron Louie
|
27d7afb656
|
Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.
|
2020-02-27 09:54:46 -05:00 |
|
Aaron Louie
|
3ef4860391
|
Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
|
2020-02-26 18:06:51 -05:00 |
Dan Funk
|
c6eb2d937d
|
Enable autoescape security feature for processing markdown data in descriptions from the BPMN Diagrams
|
2020-02-25 16:21:47 -05:00 |
|
Dan Funk
|
1e8a095760
|
Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
|
2020-02-25 12:01:25 -05:00 |
|
Aaron Louie
|
002207cbca
|
Adds redirect URL to login handler
|
2020-02-24 16:59:16 -05:00 |
|
Aaron Louie
|
443d38a9a1
|
Prevents duplication of study on update.
|
2020-02-21 11:24:51 -05:00 |
|
Aaron Louie
|
eb6354db6e
|
Moves sso_backdoor parameters to query string. Prevents duplication of user on update.
|
2020-02-21 11:24:39 -05:00 |
|
Aaron Louie
|
9f4301712e
|
Merge remote-tracking branch 'origin/master'
|
2020-02-20 17:23:17 -05:00 |
|
Aaron Louie
|
a6e0809183
|
Adds SSO attributes. Prevents uid duplication errors.
|
2020-02-20 17:23:10 -05:00 |
|
Dan Funk
|
d3c51af1f5
|
Merge branch 'master' of github.com:sartography/cr-connect-workflow
|
2020-02-20 16:04:44 -05:00 |
|
Dan Funk
|
af35f182f6
|
Random Fact updated with a markdown set of examples
|
2020-02-20 16:04:38 -05:00 |
|
Aaron Louie
|
0cda7c66e5
|
Merge remote-tracking branch 'origin/master'
|
2020-02-20 15:43:34 -05:00 |
|
Aaron Louie
|
581434b453
|
Adds SSO header attributes
|
2020-02-20 15:43:29 -05:00 |
|
Dan Funk
|
a94596112d
|
Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
|
2020-02-20 14:35:21 -05:00 |
|
Dan Funk
|
2cc6010c8d
|
Protocol builder connections
|
2020-02-20 13:30:04 -05:00 |
|
Dan Funk
|
1a9b5b50e5
|
Merge branch 'master' of github.com:sartography/cr-connect-workflow
|
2020-02-18 16:39:11 -05:00 |
|
Dan Funk
|
a642593e3d
|
Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
|
2020-02-18 16:38:56 -05:00 |
|
Aaron Louie
|
6075a32d07
|
Edits default value
|
2020-02-18 10:17:14 -05:00 |
|
Aaron Louie
|
16db1e3504
|
Adds default_value to Task schema
|
2020-02-18 10:14:03 -05:00 |
|
Aaron Louie
|
5a53ddb88c
|
Fixes vulnerability identified by SonarCloud
|
2020-02-12 11:07:01 -05:00 |
|
Aaron Louie
|
5f461d9e87
|
Fixes FactService
|
2020-02-11 22:13:46 -05:00 |
|
Aaron Louie
|
b0b1a6e5e8
|
Saves form field key
|
2020-02-11 15:03:25 -05:00 |
|
Aaron Louie
|
0a3a932c50
|
Comments out study workflow for now. Fixes failing unit tests.
|
2020-02-11 13:40:14 -05:00 |
|
Aaron Louie
|
0ef1a178ed
|
Merge branch 'master' into feature/crc_demo_workflows
|
2020-02-11 13:30:57 -05:00 |
|
Aaron Louie
|
f58ed5b6ee
|
Adds another user task at the end
|
2020-02-11 12:14:10 -05:00 |
|
Dan Funk
|
709bae76b2
|
Removing a rogue comma that was causing havoc. Also, don't fail if a mock already exists in the test database.
|
2020-02-11 11:11:21 -05:00 |
|
Dan Funk
|
879a248002
|
Adding a test to assure the file creation occurs as expected via the API.
|
2020-02-10 20:54:22 -05:00 |
|
Aaron Louie
|
359fb4a2f3
|
Adds draft demo workflow specs
|
2020-02-10 17:19:11 -05:00 |
|
Aaron Louie
|
f128e7206b
|
Adds placeholder scripts for testing
|
2020-02-10 17:18:51 -05:00 |
|
Dan Funk
|
9f0eb8477a
|
Fix for a bug in the File service where it was being overly restrictive.
|
2020-02-10 16:27:57 -05:00 |
|
Dan Funk
|
1d24ebe382
|
Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
|
2020-02-10 16:19:23 -05:00 |
|
Aaron Louie
|
fd9c685979
|
Handles processes with multiple top-level elements
|
2020-02-10 15:20:45 -05:00 |
|
Aaron Louie
|
f142d02a30
|
Adds workflow_spec_id back in to WorkflowApi
|
2020-02-07 12:36:08 -05:00 |
|
Dan Funk
|
eae6c8dd1a
|
update to last commit, left an extra column on workflow model that does not need to exist.
|
2020-02-07 11:57:48 -05:00 |
|
Dan Funk
|
e1148e1b3d
|
Merge branch 'master' of github.com:sartography/cr-connect-workflow
|
2020-02-07 11:34:57 -05:00 |
|
Dan Funk
|
9bd93748be
|
Returning better cleaner information about workflow with the workflow endpoint. Removes the get_all_tasks and get_user_tasks endpoints as tasks are returned with the workflow. Workflow endpoint also includes the last task and next_task, which may or may not be user tasks. The task "type" returned is now the class name of the task_spec, rather than just the word "task".
|
2020-02-07 11:34:44 -05:00 |
|
Aaron Louie
|
9fb3a96a50
|
Fixes instance path
|
2020-02-06 14:36:02 -05:00 |
|
Aaron Louie
|
71dac70e1f
|
Updates list of allowed files. Removes unnecessary migrations. Note this will require a full wipe & reset of the database to work.
|
2020-02-05 17:23:37 -05:00 |
|
Aaron Louie
|
5a6d589e6d
|
Adds form_field_key to API
|
2020-02-05 15:06:19 -05:00 |
|
Aaron Louie
|
58982ab306
|
Merge remote-tracking branch 'origin/feature/update-task-data' into feature/update-task-data
|
2020-02-05 14:55:59 -05:00 |
|
Aaron Louie
|
933a235471
|
Adds multiple and single file upload form controls
|
2020-02-05 14:55:52 -05:00 |
|
Aaron Louie
|
654f39e7fd
|
Adds form field key to file model.
|
2020-02-05 14:55:31 -05:00 |
|
Dan Funk
|
ff63978da0
|
read the instance/config.py file in IF it exists.
|
2020-02-05 13:43:59 -05:00 |
|
Aaron Louie
|
e1e866a2b3
|
Gets docker-compose working.
You'll need to add a .env file to the same directory as the docker-compose.yml file that sets the values for DB_USER and DB_PASS.
|
2020-02-04 21:42:09 -05:00 |
|
Dan Funk
|
ec4df2b3fa
|
Cleaning up the tests and making it easier to test workflows without adding them to the example data structure.
|
2020-02-04 16:49:28 -05:00 |
|
Dan Funk
|
b1a81957ef
|
Merge branch 'feature/update-task-data' of github.com:sartography/cr-connect-workflow into feature/update-task-data
|
2020-02-04 15:45:05 -05:00 |
|
Dan Funk
|
9e6fbfee79
|
Followup on Postgres - had some failing tests that needed cleaning up now that we are using a real database.
|
2020-02-04 15:44:06 -05:00 |
|
Aaron Louie
|
3ee0426ba9
|
Adds workflow_id to file endpoints.
|
2020-02-04 14:26:53 -05:00 |
|
Aaron Louie
|
098ecb3e87
|
Wipes out old migrations, since changing foreign key constraints in SQLite requires a full database reset anyways.
|
2020-02-04 09:57:02 -05:00 |
|
Aaron Louie
|
e717c25a25
|
Study ID is an integer. Task ID is a string.
|
2020-02-03 22:29:41 -05:00 |
|
Aaron Louie
|
0368657549
|
Adds ability to get FileModel records by study and task
|
2020-02-03 21:56:18 -05:00 |
|
Dan Funk
|
8fbbed4feb
|
You must all "do engine steps" when completing a task so that it will kick off any automatic tasks/decisions/etc... this will update remaining tasks. Added some tests for parallel, since I wrote them trying to debug this.
|
2020-02-03 15:15:36 -05:00 |
|
Aaron Louie
|
8cc04aaad2
|
Adds task data to Task schema
|
2020-02-03 10:49:48 -05:00 |
|
Aaron Louie
|
e4b2a7a641
|
Adds endpoint to retrieve all user tasks for a workflow, regardless of state
|
2020-01-31 12:40:08 -05:00 |
|
Aaron Louie
|
8d39a96606
|
Adds workflow spec & BPMN with parallel tasks
|
2020-01-31 12:01:41 -05:00 |
|
Aaron Louie
|
918a6d5ab7
|
Removes unsupported read-only flag on File schema for now
|
2020-01-31 11:33:31 -05:00 |
|
Aaron Louie
|
a0e60ddd77
|
Renames endpoint methods for clarity. Adds endpoint for just updating file info.
|
2020-01-31 10:39:19 -05:00 |
|
Dan Funk
|
3fb831bae4
|
When you create a study, all possible workflows are then associated with that study.
|
2020-01-30 09:11:17 -05:00 |
|
Dan Funk
|
acca1523b7
|
adding an api call for getting a single workflow spec.
|
2020-01-28 10:14:06 -05:00 |
|
Aaron Louie
|
a3b6e4fc7f
|
Fixes import paths
|
2020-01-24 11:52:52 -05:00 |
|
Aaron Louie
|
50dfa561a9
|
Fixes import paths, which were screwing up stuff.
|
2020-01-24 09:29:50 -05:00 |
|
Aaron Louie
|
6faabea8a4
|
Deletes related files and workflows when a workflow spec is deleted.
|
2020-01-24 09:26:17 -05:00 |
|
Aaron Louie
|
6aa3d711ce
|
Adds endpoint to delete workflow spec
|
2020-01-23 16:05:09 -05:00 |
|
Dan Funk
|
45f2e52c86
|
Merge branch 'feature/update-task-data' of github.com:sartography/cr-connect-workflow into feature/update-task-data
|
2020-01-23 15:35:51 -05:00 |
|
Dan Funk
|
95b75f864d
|
You can now add multiple files to a workflow spec, and if properly linked, you can associate a DMN file with a BPMN to process decision tables.
|
2020-01-23 15:32:53 -05:00 |
|
Aaron Louie
|
91e33a1768
|
Deletes associated file_data records when deleting a file.
|
2020-01-23 12:17:58 -05:00 |
|
Aaron Louie
|
42fa2880d0
|
Adds type hint
|
2020-01-23 10:55:07 -05:00 |
|
Aaron Louie
|
7fc2e87b84
|
Adds primary process ID to workflow spec
|
2020-01-23 10:54:41 -05:00 |
|
Aaron Louie
|
803e4be008
|
Stores workflow JSON
|
2020-01-23 10:53:59 -05:00 |
|
Aaron Louie
|
fd21f4f301
|
Fixes breaking changes from SpiffWorkflow
|
2020-01-22 16:51:25 -05:00 |
|
Aaron Louie
|
6158243053
|
Fixes modify workflow method
|
2020-01-21 15:24:17 -05:00 |
|
Aaron Louie
|
c11bf3d286
|
Adds workflow spec name field
|
2020-01-21 15:22:44 -05:00 |
|
Aaron Louie
|
bf97095933
|
Adds type hinting back in
|
2020-01-21 15:21:33 -05:00 |
|
Dan Funk
|
2ffe32afdd
|
Merge branch 'feature/update-task-data' of github.com:sartography/cr-connect-workflow into feature/update-task-data
|
2020-01-14 15:40:03 -05:00 |
|
Dan Funk
|
900819e647
|
fixing failed run
|
2020-01-14 15:39:54 -05:00 |
|
Aaron Louie
|
21fe50ed08
|
Import api before Connexion does its thing.
|
2020-01-14 15:26:39 -05:00 |
|
Aaron Louie
|
7ce48e8deb
|
Removes type hinting, in case that's breaking something.
|
2020-01-14 15:10:43 -05:00 |
|
Aaron Louie
|
054bd88760
|
Fixes path to api methods
|
2020-01-14 14:55:10 -05:00 |
|
Aaron Louie
|
790b0dfc3a
|
Adds endpoint for modifying existing workflow spec
|
2020-01-14 14:10:53 -05:00 |
|
Aaron Louie
|
fe15799ee1
|
Adds type hinting to db and session to fix Pycharm autocomplete. Replaces db.session with session.
|
2020-01-14 11:45:12 -05:00 |
|
Dan Funk
|
6361e94af5
|
Allow submitting data and progressing to the next task in a workflow.
|
2020-01-14 11:02:44 -05:00 |
|
Aaron Louie
|
75881bf1d3
|
Adds endpoint for adding a workflow specification
|
2020-01-13 21:43:09 -05:00 |
|
Aaron Louie
|
53d72bdaae
|
Includes workflow spec id
|
2020-01-13 17:52:37 -05:00 |
|
Dan Funk
|
a3d7ba8114
|
WIP
|
2020-01-07 13:23:46 -05:00 |
Aaron Louie
|
872f3fca1b
|
Returns workflow spec id with Workflow schema
|
2020-01-06 09:18:13 -05:00 |
|
Aaron Louie
|
e75da611ca
|
Adds endpoints for creating and updating a Study.
|
2020-01-03 11:44:24 -05:00 |
|
Dan Funk
|
e316d02f02
|
Adding a missing file.
|
2020-01-02 12:22:15 -05:00 |
|
Dan Funk
|
c4cbaeb64e
|
Refactor models into seperate directories
|
2019-12-31 16:32:47 -05:00 |
|
Dan Funk
|
9a195bedad
|
Fixing some caching issues and places where the updates were not being processed completed. And updates to the docker file.
|
2019-12-31 11:31:30 -05:00 |
|
Dan Funk
|
0685b282e8
|
Don't put foreign key constraints on primary keys.
|
2019-12-30 16:00:33 -05:00 |
|
Dan Funk
|
115a88347f
|
Stupid tag
|
2019-12-30 13:34:18 -05:00 |
|
Dan Funk
|
fb465531ca
|
Add the ability to delete a workflow.
|
2019-12-30 13:15:39 -05:00 |
|
Dan Funk
|
b54bd49cf4
|
Allow for clearing out the database.
|
2019-12-30 13:03:57 -05:00 |
|
Dan Funk
|
91a91e9677
|
Read workflow configuration from the database, and not from a file.
And dropping the API call in the Fact Service so we aren't hitting external apis for the time being.
|
2019-12-30 11:07:26 -05:00 |
|
Dan Funk
|
2ac2514e32
|
merge conflicts
|
2019-12-27 13:53:29 -05:00 |
|
Dan Funk
|
0b71833946
|
Adding file management. Files are stored in the database along with basic meta data.
|
2019-12-27 13:50:03 -05:00 |
|
Aaron Louie
|
ddd0422392
|
Adds some fields with some Formly-specific logic
|
2019-12-20 15:39:40 -05:00 |
|
Aaron Louie
|
9b6599505d
|
Adds task title and documentation
|
2019-12-20 15:39:02 -05:00 |
|
Aaron Louie
|
dc13855593
|
Adds properties and validation to form
|
2019-12-20 14:32:04 -05:00 |
|
Dan Funk
|
bb6ab4b8e8
|
Tasks can have forms and they are returned correctly.
|
2019-12-19 11:58:51 -05:00 |
|
Dan Funk
|
bc9bfb658e
|
Merge branch 'master' of github.com:sartography/cr-connect-workflow
|
2019-12-18 15:32:17 -05:00 |
|
Dan Funk
|
0dc422c7f6
|
we need a commit at the end, but I don't really believe that.
|
2019-12-18 15:32:06 -05:00 |
|
Aaron Louie
|
bfff4f515a
|
Auto stash before merge of "master" and "origin/master"
|
2019-12-18 15:24:01 -05:00 |
|
Dan Funk
|
53a8811769
|
Add workflow to study
|
2019-12-18 15:22:46 -05:00 |
|
Dan Funk
|
fbbd6c6659
|
Adding a workflow from a spec
|
2019-12-18 14:42:40 -05:00 |
|
Dan Funk
|
a734578327
|
re-building migrations.
|
2019-12-18 14:16:26 -05:00 |
|
Dan Funk
|
9861f6baf3
|
Lots and lots of random stuff as I organize code and get things to make sense.
|
2019-12-18 14:02:17 -05:00 |