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cr-connect-workflow
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1439 Commits

Author SHA1 Message Date
Dan 1abb2490e5 Merge branch 'feature/spec_files_wthout_db' of github.com:sartography/cr-connect-workflow into feature/spec_files_wthout_db 2022-02-07 10:33:28 -05:00
Dan 4ba122fff3 WIP - completely broken. 2022-02-07 09:12:11 -05:00
alicia pritchett 699d0ab797 updated method calls in workflow.py 
except for reordering
 2022-02-04 15:31:36 -05:00
Dan 2383c7d76d WIP - lots of random changes, trying to swtich over 2022-02-04 14:50:31 -05:00
alicia pritchett 2fb6746f6b new methods 2022-02-04 14:45:52 -05:00
Dan 6765afbd02 WIP - Move the categories and specifications out of the database. 2022-02-04 13:51:39 -05:00
Dan e103845218 fixing failing tests around default primary processes 
Removing a ton of ununsed code from example_data.
 2022-02-02 13:30:54 -05:00
Dan 4ec6e403f5 1. Created a UserFileService, so it's clear what we use when for File Services, UserFiles, SpecFiles, and ReferenceFiles each function differently. 
2. Reference Files and Spec Files are written to disk, they do not exist in the database at all.
 2022-02-02 12:59:56 -05:00
Dan 4c00a5762f partial commit - new spec_file_service, and new spec_file_api endpoints that use spec and file name, not file id. 
removed worklow_sync
cleaned up file and workflow models
most of the test are broken.
 2022-01-28 06:42:37 -05:00
Dan Funk 97c29bf77c
Merge pull request #449 from sartography/files-to-filesystem-572 
Files to filesystem 572
 2022-01-26 10:11:26 -05:00
mike cullerton d82367ab2a Move temp_migration_service code into migration 7225d990740e 
Delete test_files_to_filesystem and test_files_from_filesystem--they were only used to give me access to the migration methods
 2022-01-26 09:58:46 -05:00
Dan f3637ee6a0 resolving todos, as they are done, and removing commented out code that is no longer in use. 2022-01-25 16:37:17 -05:00
Dan 8529465322 Removed the method get_spec_data_files completly - using get_spec_files and get_spec_data to get this information instead. 
Only load the spec data files if you are creating a new workflow, otherwise just deserialize the json.
Removed the stuff about calculaing the version of the spec, as we don't use it.
 2022-01-25 16:10:54 -05:00
Dan Funk 58b3378fbf
Merge pull request #448 from sartography/get-spec-from-workflow-id-589 
Get spec from workflow id #589
 2022-01-24 16:40:53 -05:00
Dan 9690ebf883 minor minor stuff. 2022-01-24 14:43:36 -05:00
mike cullerton 1fe65ff6b7 Script to get a workflow spec from a workflow id. 2022-01-24 12:40:50 -05:00
mike cullerton 662014d378 Merge branch 'fix-login-590' into missing-bpmn-534 2022-01-21 15:31:13 -05:00
mike cullerton 7da2fa2171 Fix for failing tests 2022-01-21 15:13:05 -05:00
mike cullerton 65345a8e91 We can now set our own user_id in instance.config so that user dhf8r isn't always logged in. 2022-01-21 14:42:36 -05:00
mike cullerton 91fa44b2ab ** WIP ** 
Committing so I can work on another ticket.
 2022-01-21 14:37:11 -05:00
mike cullerton 58658d9507 Create separate tags for reference files and spec files 2022-01-20 15:58:31 -05:00
mike cullerton bc65f1c64a Limit modifying reference files to admins 2022-01-20 15:43:32 -05:00
mike cullerton 76b09a418e Created separate api files for spec_files and reference_files 2022-01-20 15:22:47 -05:00
mike cullerton ca54b850cd UNDO my previous commit regarding `get_files needs to have workflow_spec_id` 
We need to call `get_spec_files` instead now
 2022-01-20 14:57:32 -05:00
Dan f815add699 1. Add a default directory for the location of SYNC files. 
2. Added a last_updated column to the lookup table
3. The Lookup service now uses the above, and compares it to the actual file date, we can then rebuild the lookup if needed.
4. That 755 migration loads up the models, so when you change the models, the migration starts to fail.  Not really sure what to do here, but modify the migration while we are in process.
 2022-01-20 13:05:58 -05:00
mike cullerton 9ea1399578 get_files needs to have workflow_spec_id 2022-01-20 09:54:22 -05:00
mike cullerton 68820c67cb Removed (almost) all references to WorkflowSpecDependencyFile 
(There is still a call in the lookup service, but we need to decide how to fix that)
 2022-01-19 16:12:54 -05:00
mike cullerton 16a9a18c5b Fixed get reference file info, and added test 2022-01-19 15:17:35 -05:00
mike cullerton 091d71eb0f Cleaned up code around differences between file info and file data 
Cleaned up some api code around differences between file, spec_file, and reference_file
Cleaned up some api code around differences between file info and file data
Fixed some tests for file api
 2022-01-19 13:47:14 -05:00
mike cullerton d83f28e1a7 Pushed so Dan can play 2022-01-18 15:55:49 -05:00
mike cullerton 68ac056457 Merge branch 'dev' into files-to-filesystem-572 2022-01-18 08:18:14 -05:00
mike cullerton 6da6e05171 *** WIP *** 
code for updating spec files
some cleanup

tests pass, but we don't have all the tests we need.
 2022-01-13 15:24:29 -05:00
mike cullerton b99ed73951 Remove unused imports 2022-01-12 15:00:26 -05:00
mike cullerton cfa9f00bf3 *** WIP *** 
Moved reference files to their own service
 2022-01-12 14:37:33 -05:00
mike cullerton b6b9482a64 *** WIP *** 
Incremental commit. Mainly cleaning up failing tests.
 2022-01-12 13:16:09 -05:00
Dan e67a1554ea Always but always but ALWAYS, use server_default=func.now() when setting up a datetime field we autopopulate. 2022-01-12 12:33:59 -05:00
Dan c2a11a7d95 fixing an error where I accidentally deleted a bit of the API. 2022-01-12 09:58:34 -05:00
Dan d346589e07 1. added the ability to filter on level and user. 
2. added a total to the response, so you can see what the total count of users is.
3. adding user_uid to the task_log table.
 2022-01-12 08:58:50 -05:00
mike cullerton 9cc91f92c3 *** WIP *** 
cleanup - removing commented code
 2022-01-11 15:55:08 -05:00
mike cullerton 4df2ed6ce4 *** WIP *** 
Failing tests, and missing functionality.
Committing to get stuff on Github.
 2022-01-11 15:30:22 -05:00
Dan 7176452fe3 forgot the migration, also fixing an error in the TaskLogQuerySchema. 2022-01-10 13:26:16 -05:00
Dan 962d05c875 1. Created a TaskLoggingService to encapsulate what we are doing with Task Logging through BPMN Script calls and API calls from the front end. 
2. Added two api endpoints that will allow us to get all the logs for a specific workflow or study.
3. Assured that requests for logs are paginated, sortable, and can be limited to a specific code if needed.
4. Assure that we only use logging levels that match the log levels of Python.
 2022-01-10 13:16:54 -05:00
mike cullerton f537fd7fbf *** WIP *** 2022-01-07 15:58:23 -05:00
mike cullerton dc27f795c8 *** WIP *** 
Committing because it is Friday afternoon, and my computer is acting flaky
 2022-01-07 15:34:51 -05:00
mike cullerton 86a6039dc8 *** WIP *** 
**Many** tests are failing!

Committing so I can merge dev into this branch
 2022-01-06 11:46:54 -05:00
mike cullerton 110e2c56f8 cli entry point for temp_migration_service. 
Ultimately, this will call the real service.
 2022-01-04 07:28:23 -05:00
mike cullerton 7f9519736c fixed some issues with how we look up records. Try to depend on the data_obj 2022-01-04 07:26:12 -05:00
mike cullerton 2cd0f84a47 Merge branch 'dev' into files-to-filesystem-572 2022-01-03 08:06:17 -05:00
Dan 1446302a04 A quick fix for an error we are seeing in testing. 2021-12-30 15:27:31 -05:00
Dan 3480e1c8ab use a signal, in addition to firing off a cancel notify when a workflow is restarted. 2021-12-23 15:30:09 -05:00