Aaron Louie
14a2e4b5fa
Sets path to flask app in docker_run
2020-05-25 00:47:49 -04:00
Aaron Louie
cb2613feee
Fixes all the paths and routing errors
2020-05-24 23:09:12 -04:00
Aaron Louie
d9d1367556
Runs as root (for now)
2020-05-24 21:09:55 -04:00
Aaron Louie
00255ce2a0
Forgot a backslash
2020-05-24 21:01:02 -04:00
Aaron Louie
532e6b8433
Starts gunicorn, passing port and base href path
2020-05-24 20:58:19 -04:00
Aaron Louie
b1718078ff
Refactors Dockerfile again. Installs gunicorn. Don't run gunicorn until the container starts up.
2020-05-24 20:53:25 -04:00
Aaron Louie
5ec97dc68d
Goes back to default install location. Copies files to the right spot
2020-05-24 18:29:45 -04:00
Aaron Louie
0f48d6c81e
Installs the app in the right place (maybe?)
2020-05-24 17:18:56 -04:00
Aaron Louie
52208d9c8a
Adds wait-for-it script
2020-05-24 14:53:48 -04:00
Aaron Louie
28c254a106
Fixes path to static directory
2020-05-24 14:11:53 -04:00
Aaron Louie
baaf73b5d9
Bumps Python version to 3.7
2020-05-24 13:43:12 -04:00
Aaron Louie
be1d54bbc5
Builds Docker image as WSGI + gunicorn
2020-05-24 12:37:11 -04:00
Aaron Louie
4eaee57076
Apparently, APPLICATION_ROOT does something.
2020-05-24 00:05:13 -04:00
Aaron Louie
68084a84cf
Adds base href environment variable. Sets base path for API and all routes from BASE_HREF environment variable.
2020-05-23 22:07:22 -04:00
Aaron Louie
6c14248ef9
Adds 'v1.0/' to login route
2020-05-23 14:49:02 -04:00
Aaron Louie
20bf01a888
Adds cascade to study relationship so data loader doesn't freak out.
2020-05-22 22:04:11 -04:00
Aaron Louie
00955723b0
Merge branch 'rrt/dev' into dev
2020-05-22 20:29:21 -04:00
Dan Funk
49c322177b
Merge pull request #76 from sartography/feature/rrp-endpoints
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Feature/rrp endpoints
2020-05-22 19:38:26 -04:00
Carlos López
833f65fe8c
Merge pull request #75 from sartography/feature/add_review_model
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Feature/add review model
2020-05-22 17:30:01 -06:00
Dan Funk
148e86bb42
Building out the boilerplate code to make pushing forward on this a little friendlier.
...
There is an approval api file, and approval model file and an approval test file.
2020-05-22 18:25:00 -04:00
Dan Funk
571c1d7d24
Merge branch 'feature/rrp-endpoints' into feature/disable_protocol_builder
2020-05-22 16:18:33 -04:00
Dan Funk
d1606ffb1a
forgot to include the new empty master workflow, which allows the tests to all pass.
2020-05-22 15:31:38 -04:00
Dan Funk
1017bb1897
On the tools/render_docx api, allow sending the json data in the body, rather than as a ludicrous long get parameter. Silly Dan.
2020-05-22 15:30:22 -04:00
Aaron Louie
2e94ab1584
Only runs upgrade if env variable says to.
2020-05-22 14:55:55 -04:00
Dan Funk
503c1c8f18
Allow disabling the Protocol Builder
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PB_ENABLED can be set to false in the configuration (either in a file called instance/config.py, or as an environment variable)
Added a check in the base_test, to assure that we are always running tests with the test configuration, and bail out otherwise. Setting TESTING=true as an environment variable will get this, but so well the correct ordering of imports. Just be dead certain the first file every test file imports is base_test.py.
Aaron was right, and we call the Protocol Builder in all kinds of awful places. But we don't do this now. So Carlos, you should have the ability to reuse a lot of the logic in the study_service now.
I dropped the poorly named "study-update" endpoint completely. We weren't using it. POST and PUT to Study still work just fine for doing exactly that.
All the tests now run and pass with the Protocol builder disabled. Tests that specifically check PB behavior turn it back on for the test, or mock it out.
2020-05-22 14:37:49 -04:00
Dan Funk
992a85e9a5
Rough idea of what the Approvals model will look like.
2020-05-22 11:56:43 -04:00
Carlos Lopez
a0c884499e
Merge branch 'feature/rrp-endpoints' of github.com:sartography/cr-connect-workflow into feature/rrp-endpoints
2020-05-22 09:46:25 -06:00
Carlos Lopez
1ed7930aab
Endpoint for studies with files
2020-05-22 09:46:03 -06:00
Dan Funk
8b3dc8e0ca
Merge branch 'dev' into feature/rrp-endpoints
2020-05-22 11:41:11 -04:00
Dan Funk
b490005af7
dropping the remaining config stuff for flask_sso.
...
updaing the user 'sso' endpoint to provide additional information for debugging.
Pulling information from ldap to stay super consistent on where we get our information.
2020-05-22 09:50:18 -04:00
Dan Funk
1cc9a60bfe
clearing out the remaining references to the flask_sso library.
2020-05-22 08:01:33 -04:00
Dan Funk
4627318818
Dropping flask_sso library in favor of reading from the headers directly. Updating login to read from ldap once it has the user_id. Adding more information to the sso endpoint.
2020-05-22 07:55:58 -04:00
Dan Funk
b3ae9ee770
changing the mapping, because 'Uid' not 'uid'
2020-05-21 16:28:34 -04:00
Dan Funk
0265db7146
adding an /sso endpoint for testing.
2020-05-21 16:02:45 -04:00
Dan Funk
4628834106
just a few more logging details.
2020-05-21 12:11:35 -04:00
Aaron Louie
d76c18d329
Installs curl
2020-05-20 20:13:09 -04:00
Carlos Lopez
abc90cdcb1
Adding serialiazer for study files
2020-05-20 15:10:22 -06:00
Aaron Louie
d0f380e224
Uses Python 3.6.9
2020-05-20 16:49:55 -04:00
Aaron Louie
595364b415
Merge branch 'ec2/dev' into dev
2020-05-20 16:34:53 -04:00
Aaron Louie
b915794000
Fixes more paths.
2020-05-20 15:57:54 -04:00
Dan Funk
de7cebbd7d
o
2020-05-20 15:32:40 -04:00
Aaron Louie
616a47bd10
Fixes file paths
2020-05-20 15:17:03 -04:00
Dan Funk
5f793db606
It is critical that the Pipfile python version matches the python version on the server.
2020-05-20 15:07:16 -04:00
Aaron Louie
865188795f
Adds git. Purges apt cache after
2020-05-20 15:04:41 -04:00
Aaron Louie
97130e504a
Adds git
2020-05-20 14:57:03 -04:00
Aaron Louie
91a228d3f4
Trying to slim down the size of the image
2020-05-20 14:33:39 -04:00
Dan Funk
2c407ae607
adding requirements.txt and a way to regenerate it.
2020-05-20 14:21:39 -04:00
Dan Funk
57615edde3
adding wsgi configuration.
2020-05-20 14:01:09 -04:00
Dan Funk
8647ebee42
Moving spiff back to master branch, with fixes for parallel, and performance improvements.
2020-05-20 10:57:20 -04:00
Aaron Louie
51ece390f3
Merge branch 'testing' into dev
2020-05-20 10:03:41 -04:00
