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Author SHA1 Message Date
mike cullerton
060ee5076d New script to get IRB Info for a study 2021-05-01 15:52:41 -04:00
mike cullerton
1bcf4ea02e Test and mock data for new get_irb_info service in ProtocolBuilderService 2021-05-01 15:23:07 -04:00
mike cullerton
22b3230243 Added service get_irb_info to crc.services.protocol_builder.ProtocolBuilderService 
Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
 2021-05-01 15:20:47 -04:00
Kelly McDonald
71a63c049d Merge remote-tracking branch 'origin/dev' into dev 2021-04-27 12:16:36 -04:00
Dan
248ca6a33a Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees) 
todo: Create a ticket to assure we don't get in an infinite loading loop.
 2021-04-27 12:14:37 -04:00
Kelly McDonald
799747d638 Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane. 2021-04-27 12:13:49 -04:00
Dan
4946f77f58 adding a missing migration 2021-04-26 15:11:17 -04:00
Dan Funk
21e95b106d
Merge pull request #295 from sartography/299-document-datastore 
Add file_data_get and file_data_set functions that can be accessed in…
 2021-04-26 12:49:46 -04:00
Dan
047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
Kelly McDonald
40ee20ecca Add file_data_get and file_data_set functions that can be accessed in a bpmn script function 
Fixes #299
 2021-04-26 09:55:28 -04:00
Kelly McDonald
d3d7eeb309 Add file_data_get and file_data_set functions that can be accessed in a bpmn script function 
Fixes #299
 2021-04-26 09:41:14 -04:00
Dan
dd7c5fd1c1 Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files. 2021-04-23 16:16:19 -04:00
Dan Funk
63dcb4599e
Merge pull request #292 from sartography/277-Document-pane 
277 document pane
 2021-04-21 17:28:41 -04:00
Dan
cf051a7d4f Merge branch 'dev' into 277-Document-pane 
# Conflicts:
#	crc/api/file.py
 2021-04-21 14:09:44 -04:00
Dan
ecff7d20d3 Adding a test for the new endpoint and cleaning up the API documenation 2021-04-21 14:00:19 -04:00
Kelly McDonald
19e94da6b6 Fix slight bug in expansion code, 
a non-expanded node was causing all parent levels to not expand.
 2021-04-20 11:11:11 -04:00
Kelly McDonald
e2197ddab9 Changes to support the frontend data pane 
fixes #277 and requires frontend branch 277-document-pane
 2021-04-20 08:12:27 -04:00
Dan Funk
277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142 
Auto set primary bpmn #142
 2021-04-16 13:36:02 -04:00
Dan Funk
8fa79f1285
Merge pull request #289 from sartography/document-deletion-on-restart-279 
Document deletion on restart #279
 2021-04-16 13:33:11 -04:00
mike cullerton
fdaa069886 Added test for automatically setting the primary bpmn for a workflow spec 2021-04-15 13:29:42 -04:00
mike cullerton
8953637466 moved the minimal_bpmn method to base_test 2021-04-15 13:28:03 -04:00
mike cullerton
2374400542 Automatically set the first workflow for a workflow_spec to primary 2021-04-15 12:39:12 -04:00
mike cullerton
2d4a68da6d Added test for deleting files on restart. 2021-04-15 11:30:17 -04:00
mike cullerton
69396f9888 Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow 2021-04-15 11:28:35 -04:00
mike cullerton
91e80d01bc Added delete_files argument to the workflow_processor reset method. 
Added code to delete the files when delete_files is True.
 2021-04-15 11:25:58 -04:00
mike cullerton
3332b9c7c0 Added delete_files argument to the restart_workflow api method, and pass it along to WorkflowProcessor.reset 2021-04-15 11:23:20 -04:00
mike cullerton
4615649938 Added delete_files argument to the workflow restart api endpoint 2021-04-15 11:21:51 -04:00
Kelly McDonald
949f3be403 give an endpoint to return all files associated with a study 2021-04-12 12:23:33 -04:00
Dan
069de83bd5 forgot to include a bpmn for the tests. 2021-04-09 09:02:43 -04:00
Dan
6427a54d74 Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary. 2021-04-09 08:40:58 -04:00
Dan
99394ef953 Fix to spiffworkflow. 2021-04-08 16:11:49 -04:00
Dan
41310b6879 Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts. 2021-04-08 13:42:17 -04:00
Dan Funk
611c72f431
Merge pull request #284 from sartography/delete-uploaded-file-script-283 
Delete uploaded file script #283
 2021-04-08 12:42:30 -04:00
Dan Funk
b0896548f2
Merge pull request #285 from sartography/dependabot/pip/deploy/urllib3-1.26.4 
Bump urllib3 from 1.26.3 to 1.26.4 in /deploy
 2021-04-08 12:35:30 -04:00
dependabot[bot]
e3302c56ea
Bump urllib3 from 1.26.3 to 1.26.4 in /deploy 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.3 to 1.26.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.3...1.26.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-04-06 18:08:27 +00:00
mike cullerton
5155db89f9 Added test for deleting multiple files. 
Fixed existing tests to accommodate changes to test workflow bpmn file
 2021-04-05 15:13:32 -04:00
mike cullerton
70fbd49aab Modified my test workflow so it works better for testing multiple file deletions 2021-04-05 15:12:14 -04:00
mike cullerton
f8428378e2 You can now delete a document or list of documents. 
Also, refactored the fancy bits into `process_document_deletion`
 2021-04-05 15:11:06 -04:00
mike cullerton
33cef2bd2a Added tests for failing conditions 2021-04-05 13:19:29 -04:00
mike cullerton
c6b1fd4e52 Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table. 2021-04-05 13:18:56 -04:00
mike cullerton
61f37ff894 Changed the order of imports so I could debug a failing test 2021-04-05 13:16:43 -04:00
mike cullerton
f0f5cff8d7 Added some checks to do_task to look for valid irb_doc_code and whether or not we found a file 
Added code for do_task_validate
 2021-04-05 13:15:09 -04:00
Dan
4fd8fd13f8 Remove approvals from the study_info script. It was broken, and isn't really possible in this way anymore 2021-04-05 12:52:23 -04:00
Dan
501487b31c Assure we convert to box for validations as well, and test the bloodly snot out of this. 2021-04-05 12:47:50 -04:00
Dan
727aa72e18 Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks. 2021-04-05 11:31:06 -04:00
mike cullerton
9317e49e65 Merge branch 'dev' into delete-uploaded-file-script-283 2021-04-05 10:40:33 -04:00
Kelly McDonald
9f66a938f2 Update pip 2021-04-05 10:19:29 -04:00
mike cullerton
d81497f8cb Test and workflow for new script to delete IRB documents 2021-04-05 08:55:41 -04:00
mike cullerton
0eb6291740 Script to delete an IRB document. Takes an irb_document argument. 
Deletes all files associated with the workflow with that IRB document code
 2021-04-05 08:55:02 -04:00
Dan Funk
7ef43fd477
Merge pull request #279 from sartography/263-optimize-dashboard 
263 optimize dashboard
 2021-04-02 18:54:56 -04:00