No functional changes here. The biggest change was moving certain files into new directories like `plonk` and `iop` (for things like `Challenger` that could be used in STARKs or other IOPs). I also split a few files, renames, etc, but again nothing functional, so I don't think a careful review is necessary (just a sanity check).
* Have add_gate take a generic type instead of GateRef
There are a couple advantages
- Users writing their own gates won't need to know about the `GateRef` wrapper; it's more of an internal thing now.
- Easier access to gate methods requiring `self` -- for example, `split_le_base` can just call `gate_type.limbs()` now.
* Update comment
* Always insert
* Draw challenge points from the extension field
* Now building
* Misc
* Default eval_unfiltered_base
* fmt
* A few field settings
* Add to Sage
* Display tweak
* eval_filtered_base
* Quartic in bench
* Missing methods
* Fix tests
* PR feedback
As discussed, it seems like the batch opening argument will be a significant cost, and we can reduce that cost by not including shifted openings (except for `Z`s which need them).
