No functional changes here. The biggest change was moving certain files into new directories like `plonk` and `iop` (for things like `Challenger` that could be used in STARKs or other IOPs). I also split a few files, renames, etc, but again nothing functional, so I don't think a careful review is necessary (just a sanity check).
* Have add_gate take a generic type instead of GateRef
There are a couple advantages
- Users writing their own gates won't need to know about the `GateRef` wrapper; it's more of an internal thing now.
- Easier access to gate methods requiring `self` -- for example, `split_le_base` can just call `gate_type.limbs()` now.
* Update comment
* Always insert
With this approach, we don't need `Target::PublicInput`; any routable `Target` can be marked as a public input via `register_public_input`. The circuit itself hashes these targets, and routes the hash output to the first four wires of a `PublicInputGate`, which is placed at an arbitrary location in the circuit.
All gates have direct access to the purported hash of public inputs. We could think of them as accessing `PI_hash_i(x)` (as in Plonk), but these are now (four) constant functions, so they effectively have direct access to the hash itself.
`PublicInputGate` checks that its first four wires match this purported public input hash. The other gates ignore the hash.
Resolves#64.
* More routed wires for recursion
For the insertion gate, which (with a FRI arity of 4) uses 1 wire for the insertion index, D for the elemnet to insert, 3D for the original list, and 4D for the output list.
* import
