refactor/db-message-store-split (#280)

* fixes

* fic

* fix

* fix

* fix

* fixed

* fix

* fixes

* fixes, using sqlite lib fully

* fix

* Update sqlite.nim
This commit is contained in:
Dean Eigenmann 2020-11-24 03:50:59 +01:00 committed by GitHub
parent 54ac399f5f
commit e875027be4
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
6 changed files with 264 additions and 173 deletions

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@ -4,12 +4,14 @@ import
chronos, chronicles,
../../waku/v2/node/message_store,
./utils,
../../waku/v2/waku_types
../../waku/v2/waku_types,
../../waku/v2/node/sqlite
suite "Message Store":
test "set and get works":
let
store = MessageStore.init("", inMemory = true)[]
database = SqliteDatabase.init("", inMemory = true)[]
store = MessageStore.init(database)[]
topic = ContentTopic(1)
var msgs = @[

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@ -9,7 +9,7 @@ import
libp2p/crypto/crypto,
libp2p/protocols/pubsub/rpc/message,
../../waku/v2/protocol/[waku_store, message_notifier],
../../waku/v2/node/message_store,
../../waku/v2/node/[message_store, sqlite],
../test_helpers, ./utils,
../../waku/v2/waku_types
@ -61,7 +61,8 @@ procSuite "Waku Store":
key = PrivateKey.random(ECDSA, rng[]).get()
peer = PeerInfo.init(key)
topic = ContentTopic(1)
store = MessageStore.init("/foo", inMemory = true)[]
database = SqliteDatabase.init("", inMemory = true)[]
store = MessageStore.init(database)[]
msg = WakuMessage(payload: @[byte 1, 2, 3], contentTopic: topic)
msg2 = WakuMessage(payload: @[byte 1, 2, 3], contentTopic: ContentTopic(2))

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@ -7,9 +7,8 @@ import
libp2p/protobuf/minprotobuf,
libp2p/stream/connection,
stew/results, metrics,
../waku_types
{.push raises: [Defect].}
../waku_types,
./sqlite
# The code in this file is an adaptation of the Sqlite KV Store found in nim-eth.
# https://github.com/status-im/nim-eth/blob/master/eth/db/kvstore_sqlite3.nim
@ -17,137 +16,30 @@ import
# Most of it is a direct copy, the only unique functions being `get` and `put`.
type
RawStmtPtr = ptr sqlite3_stmt
AutoDisposed[T: ptr|ref] = object
val: T
DataProc* = proc(timestamp: uint64, msg: WakuMessage) {.closure.}
template dispose(db: Sqlite) =
discard sqlite3_close(db)
template dispose(db: RawStmtPtr) =
discard sqlite3_finalize(db)
proc release[T](x: var AutoDisposed[T]): T =
result = x.val
x.val = nil
proc disposeIfUnreleased[T](x: var AutoDisposed[T]) =
mixin dispose
if x.val != nil:
dispose(x.release)
template checkErr(op, cleanup: untyped) =
if (let v = (op); v != SQLITE_OK):
cleanup
return err($sqlite3_errstr(v))
template checkErr(op) =
checkErr(op): discard
proc init*(
T: type MessageStore,
basePath: string,
name: string = "store",
readOnly = false,
inMemory = false): MessageStoreResult[T] =
var env: AutoDisposed[ptr sqlite3]
defer: disposeIfUnreleased(env)
let
name =
if inMemory: ":memory:"
else: basepath / name & ".sqlite3"
flags =
if readOnly: SQLITE_OPEN_READONLY
else: SQLITE_OPEN_READWRITE or SQLITE_OPEN_CREATE
if not inMemory:
try:
createDir(basePath)
except OSError, IOError:
return err("`sqlite: cannot create database directory")
checkErr sqlite3_open_v2(name, addr env.val, flags.cint, nil)
template prepare(q: string, cleanup: untyped): ptr sqlite3_stmt =
var s: ptr sqlite3_stmt
checkErr sqlite3_prepare_v2(env.val, q, q.len.cint, addr s, nil):
cleanup
s
template checkExec(s: ptr sqlite3_stmt) =
if (let x = sqlite3_step(s); x != SQLITE_DONE):
discard sqlite3_finalize(s)
return err($sqlite3_errstr(x))
if (let x = sqlite3_finalize(s); x != SQLITE_OK):
return err($sqlite3_errstr(x))
template checkExec(q: string) =
let s = prepare(q): discard
checkExec(s)
template checkWalPragmaResult(journalModePragma: ptr sqlite3_stmt) =
if (let x = sqlite3_step(journalModePragma); x != SQLITE_ROW):
discard sqlite3_finalize(journalModePragma)
return err($sqlite3_errstr(x))
if (let x = sqlite3_column_type(journalModePragma, 0); x != SQLITE3_TEXT):
discard sqlite3_finalize(journalModePragma)
return err($sqlite3_errstr(x))
if (let x = sqlite3_column_text(journalModePragma, 0);
x != "memory" and x != "wal"):
discard sqlite3_finalize(journalModePragma)
return err("Invalid pragma result: " & $x)
# TODO: check current version and implement schema versioning
checkExec "PRAGMA user_version = 1;"
let journalModePragma = prepare("PRAGMA journal_mode = WAL;"): discard
checkWalPragmaResult(journalModePragma)
checkExec(journalModePragma)
DataProc* = proc(timestamp: uint64, msg: WakuMessage) {.closure.}
proc init*(T: type MessageStore, db: SqliteDatabase): MessageStoreResult[T] =
## Table is the SQL query for creating the messages Table.
## It contains:
## - 4-Byte ContentTopic stored as an Integer
## - Payload stored as a blob
checkExec """
let prepare = db.prepareStmt("""
CREATE TABLE IF NOT EXISTS messages (
id BLOB PRIMARY KEY,
timestamp INTEGER NOT NULL,
contentTopic INTEGER NOT NULL,
payload BLOB
) WITHOUT ROWID;
"""
""", NoParams, void)
ok(MessageStore(
env: env.release
))
if prepare.isErr:
return err("failed to prepare")
template prepare(env: Sqlite, q: string, cleanup: untyped): ptr sqlite3_stmt =
var s: ptr sqlite3_stmt
checkErr sqlite3_prepare_v2(env, q, q.len.cint, addr s, nil):
cleanup
s
let res = prepare.value.exec(())
if res.isErr:
return err("failed to exec")
proc bindParam(s: RawStmtPtr, n: int, val: auto): cint =
when val is openarray[byte]|seq[byte]:
if val.len > 0:
sqlite3_bind_blob(s, n.cint, unsafeAddr val[0], val.len.cint, nil)
else:
sqlite3_bind_blob(s, n.cint, nil, 0.cint, nil)
elif val is int32:
sqlite3_bind_int(s, n.cint, val)
elif val is uint32:
sqlite3_bind_int(s, int(n).cint, int(val).cint)
elif val is int64:
sqlite3_bind_int64(s, n.cint, val)
else:
{.fatal: "Please add support for the 'kek' type".}
ok(MessageStore(database: db))
proc put*(db: MessageStore, cursor: Index, message: WakuMessage): MessageStoreResult[void] =
## Adds a message to the storage.
@ -158,28 +50,21 @@ proc put*(db: MessageStore, cursor: Index, message: WakuMessage): MessageStoreRe
## let res = db.put(message)
## if res.isErr:
## echo "error"
let s = prepare(db.env, "INSERT INTO messages (id, timestamp, contentTopic, payload) VALUES (?, ?, ?, ?);"): discard
checkErr bindParam(s, 1, @(cursor.digest.data))
checkErr bindParam(s, 2, int64(cursor.receivedTime))
checkErr bindParam(s, 3, message.contentTopic)
checkErr bindParam(s, 4, message.payload)
##
let prepare = db.database.prepareStmt(
"INSERT INTO messages (id, timestamp, contentTopic, payload) VALUES (?, ?, ?, ?);",
(seq[byte], int64, uint32, seq[byte]),
void
)
let res =
if (let v = sqlite3_step(s); v != SQLITE_DONE):
err($sqlite3_errstr(v))
else:
ok()
if prepare.isErr:
return err("failed to prepare")
# release implict transaction
discard sqlite3_reset(s) # same return information as step
discard sqlite3_clear_bindings(s) # no errors possible
let res = prepare.value.exec((@(cursor.digest.data), int64(cursor.receivedTime), message.contentTopic, message.payload))
if res.isErr:
return err("failed")
res
proc close*(db: MessageStore) =
discard sqlite3_close(db.env)
db[] = MessageStore()[]
ok()
proc getAll*(db: MessageStore, onData: DataProc): MessageStoreResult[bool] =
## Retreives all messages from the storage.
@ -193,30 +78,23 @@ proc getAll*(db: MessageStore, onData: DataProc): MessageStoreResult[bool] =
## let res = db.get(data)
## if res.isErr:
## echo "error"
var gotMessages = false
proc msg(s: ptr sqlite3_stmt) =
gotMessages = true
let
timestamp = sqlite3_column_int64(s, 0)
topic = sqlite3_column_int(s, 1)
p = cast[ptr UncheckedArray[byte]](sqlite3_column_blob(s, 2))
l = sqlite3_column_bytes(s, 2)
let query = "SELECT timestamp, contentTopic, payload FROM messages"
var s = prepare(db.env, query): discard
onData(uint64(timestamp), WakuMessage(contentTopic: ContentTopic(int(topic)), payload: @(toOpenArray(p, 0, l-1))))
try:
var gotResults = false
while true:
let v = sqlite3_step(s)
case v
of SQLITE_ROW:
let
timestamp = sqlite3_column_int64(s, 0)
topic = sqlite3_column_int(s, 1)
p = cast[ptr UncheckedArray[byte]](sqlite3_column_blob(s, 2))
l = sqlite3_column_bytes(s, 2)
let res = db.database.query("SELECT timestamp, contentTopic, payload FROM messages", msg)
if res.isErr:
return err("failed")
onData(uint64(timestamp), WakuMessage(contentTopic: ContentTopic(int(topic)), payload: @(toOpenArray(p, 0, l-1))))
gotResults = true
of SQLITE_DONE:
break
else:
return err($sqlite3_errstr(v))
return ok gotResults
finally:
# release implicit transaction
discard sqlite3_reset(s) # same return information as step
discard sqlite3_clear_bindings(s) # no errors possible
ok gotMessages
proc close*(db: MessageStore) =
## Closes the database.
db.database.close()

207
waku/v2/node/sqlite.nim Normal file
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@ -0,0 +1,207 @@
import
os,
sqlite3_abi,
chronos, chronicles, metrics, stew/results,
libp2p/crypto/crypto,
libp2p/protocols/protocol,
libp2p/protobuf/minprotobuf,
libp2p/stream/connection,
stew/results, metrics
{.push raises: [Defect].}
# The code in this file is an adaptation of the Sqlite KV Store found in nim-eth.
# https://github.com/status-im/nim-eth/blob/master/eth/db/kvstore_sqlite3.nim
#
# Most of it is a direct copy, the only unique functions being `get` and `put`.
type
DatabaseResult*[T] = Result[T, string]
Sqlite = ptr sqlite3
NoParams* = tuple
RawStmtPtr = ptr sqlite3_stmt
SqliteStmt*[Params; Result] = distinct RawStmtPtr
AutoDisposed[T: ptr|ref] = object
val: T
SqliteDatabase* = ref object of RootObj
env*: Sqlite
template dispose(db: Sqlite) =
discard sqlite3_close(db)
template dispose(db: RawStmtPtr) =
discard sqlite3_finalize(db)
proc release[T](x: var AutoDisposed[T]): T =
result = x.val
x.val = nil
proc disposeIfUnreleased[T](x: var AutoDisposed[T]) =
mixin dispose
if x.val != nil:
dispose(x.release)
template checkErr*(op, cleanup: untyped) =
if (let v = (op); v != SQLITE_OK):
cleanup
return err($sqlite3_errstr(v))
template checkErr*(op) =
checkErr(op): discard
proc init*(
T: type SqliteDatabase,
basePath: string,
name: string = "store",
readOnly = false,
inMemory = false): DatabaseResult[T] =
var env: AutoDisposed[ptr sqlite3]
defer: disposeIfUnreleased(env)
let
name =
if inMemory: ":memory:"
else: basepath / name & ".sqlite3"
flags =
if readOnly: SQLITE_OPEN_READONLY
else: SQLITE_OPEN_READWRITE or SQLITE_OPEN_CREATE
if not inMemory:
try:
createDir(basePath)
except OSError, IOError:
return err("`sqlite: cannot create database directory")
checkErr sqlite3_open_v2(name, addr env.val, flags.cint, nil)
template prepare(q: string, cleanup: untyped): ptr sqlite3_stmt =
var s: ptr sqlite3_stmt
checkErr sqlite3_prepare_v2(env.val, q, q.len.cint, addr s, nil):
cleanup
s
template checkExec(s: ptr sqlite3_stmt) =
if (let x = sqlite3_step(s); x != SQLITE_DONE):
discard sqlite3_finalize(s)
return err($sqlite3_errstr(x))
if (let x = sqlite3_finalize(s); x != SQLITE_OK):
return err($sqlite3_errstr(x))
template checkExec(q: string) =
let s = prepare(q): discard
checkExec(s)
template checkWalPragmaResult(journalModePragma: ptr sqlite3_stmt) =
if (let x = sqlite3_step(journalModePragma); x != SQLITE_ROW):
discard sqlite3_finalize(journalModePragma)
return err($sqlite3_errstr(x))
if (let x = sqlite3_column_type(journalModePragma, 0); x != SQLITE3_TEXT):
discard sqlite3_finalize(journalModePragma)
return err($sqlite3_errstr(x))
if (let x = sqlite3_column_text(journalModePragma, 0);
x != "memory" and x != "wal"):
discard sqlite3_finalize(journalModePragma)
return err("Invalid pragma result: " & $x)
# TODO: check current version and implement schema versioning
checkExec "PRAGMA user_version = 1;"
let journalModePragma = prepare("PRAGMA journal_mode = WAL;"): discard
checkWalPragmaResult(journalModePragma)
checkExec(journalModePragma)
ok(SqliteDatabase(
env: env.release
))
template prepare*(env: Sqlite, q: string, cleanup: untyped): ptr sqlite3_stmt =
var s: ptr sqlite3_stmt
checkErr sqlite3_prepare_v2(env, q, q.len.cint, addr s, nil):
cleanup
s
proc bindParam*(s: RawStmtPtr, n: int, val: auto): cint =
when val is openarray[byte]|seq[byte]:
if val.len > 0:
sqlite3_bind_blob(s, n.cint, unsafeAddr val[0], val.len.cint, nil)
else:
sqlite3_bind_blob(s, n.cint, nil, 0.cint, nil)
elif val is int32:
sqlite3_bind_int(s, n.cint, val)
elif val is uint32:
sqlite3_bind_int(s, int(n).cint, int(val).cint)
elif val is int64:
sqlite3_bind_int64(s, n.cint, val)
else:
{.fatal: "Please add support for the 'kek' type".}
template bindParams(s: RawStmtPtr, params: auto) =
when params is tuple:
var i = 1
for param in fields(params):
checkErr bindParam(s, i, param)
inc i
else:
checkErr bindParam(s, 1, params)
proc exec*[P](s: SqliteStmt[P, void], params: P): DatabaseResult[void] =
let s = RawStmtPtr s
bindParams(s, params)
let res =
if (let v = sqlite3_step(s); v != SQLITE_DONE):
err($sqlite3_errstr(v))
else:
ok()
# release implict transaction
discard sqlite3_reset(s) # same return information as step
discard sqlite3_clear_bindings(s) # no errors possible
res
type
DataProc* = proc(s: ptr sqlite3_stmt) {.closure.}
proc query*(db: SqliteDatabase, query: string, onData: DataProc): DatabaseResult[bool] =
var s = prepare(db.env, query): discard
try:
var gotResults = false
while true:
let v = sqlite3_step(s)
case v
of SQLITE_ROW:
onData(s)
gotResults = true
of SQLITE_DONE:
break
else:
return err($sqlite3_errstr(v))
return ok gotResults
finally:
# release implicit transaction
discard sqlite3_reset(s) # same return information as step
discard sqlite3_clear_bindings(s) # no errors possible
proc prepareStmt*(
db: SqliteDatabase,
stmt: string,
Params: type,
Res: type
): DatabaseResult[SqliteStmt[Params, Res]] =
var s: RawStmtPtr
checkErr sqlite3_prepare_v2(db.env, stmt, stmt.len.cint, addr s, nil)
ok SqliteStmt[Params, Res](s)
proc close*(db: SqliteDatabase) =
discard sqlite3_close(db.env)
db[] = SqliteDatabase()[]

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@ -13,7 +13,8 @@ import
../protocol/[waku_relay, waku_store, waku_filter, message_notifier],
../protocol/waku_swap/waku_swap,
../waku_types,
./message_store
./message_store,
./sqlite
export waku_types
@ -402,7 +403,11 @@ when isMainModule:
var store: MessageStore
if conf.dbpath != "":
let res = MessageStore.init(conf.dbpath)
let dbRes = SqliteDatabase.init(conf.dbpath)
if dbRes.isErr:
warn "failed to init database", err = dbRes.error
let res = MessageStore.init(dbRes.value)
if res.isErr:
warn "failed to init MessageStore", err = res.error
else:

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@ -13,7 +13,7 @@ import
libp2p/protocols/pubsub/[pubsub, gossipsub],
protocol/waku_swap/waku_swap_types,
nimcrypto/sha2,
sqlite3_abi
./node/sqlite
# Constants required for pagination -------------------------------------------
const MaxPageSize* = 100 # Maximum number of waku messages in each page
@ -80,10 +80,8 @@ type
MessageStoreResult*[T] = Result[T, string]
Sqlite* = ptr sqlite3
MessageStore* = ref object of RootObj
env*: Sqlite
database*: SqliteDatabase
WakuStore* = ref object of LPProtocol
switch*: Switch