nimbus-eth1/nimbus/db/aristo/aristo_merge.nim
Jacek Sieka f034af422a
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.

Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:

* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.

Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.

On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)

```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```

Note: clients need to be resynced as the PR changes the on-disk format

R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00

260 lines
9.6 KiB
Nim

# nimbus-eth1
# Copyright (c) 2023-2024 Status Research & Development GmbH
# Licensed under either of
# * Apache License, version 2.0, ([LICENSE-APACHE](LICENSE-APACHE) or
# http://www.apache.org/licenses/LICENSE-2.0)
# * MIT license ([LICENSE-MIT](LICENSE-MIT) or
# http://opensource.org/licenses/MIT)
# at your option. This file may not be copied, modified, or distributed
# except according to those terms.
## Aristo DB -- Patricia Trie builder, raw node insertion
## ======================================================
##
## This module merges `PathID` values as hexary lookup paths into the
## `Patricia Trie`. When changing vertices (aka nodes without Merkle hashes),
## associated (but separated) Merkle hashes will be deleted unless locked.
## Instead of deleting locked hashes error handling is applied.
##
## Also, nodes (vertices plus merkle hashes) can be added which is needed for
## boundary proofing after `snap/1` download. The vertices are split from the
## nodes and stored as-is on the table holding `Patricia Trie` entries. The
## hashes are stored iin a separate table and the vertices are labelled
## `locked`.
{.push raises: [].}
import
std/typetraits,
eth/common,
results,
"."/[aristo_desc, aristo_fetch, aristo_get, aristo_layers, aristo_vid]
proc layersPutLeaf(
db: AristoDbRef, rvid: RootedVertexID, path: NibblesBuf, payload: LeafPayload
): VertexRef =
let vtx = VertexRef(vType: Leaf, pfx: path, lData: payload)
db.layersPutVtx(rvid, vtx)
vtx
proc mergePayloadImpl(
db: AristoDbRef, # Database, top layer
root: VertexID, # MPT state root
path: openArray[byte], # Leaf item to add to the database
leaf: Opt[VertexRef],
payload: LeafPayload, # Payload value
): Result[(VertexRef, VertexRef, VertexRef), AristoError] =
## Merge the argument `(root,path)` key-value-pair into the top level vertex
## table of the database `db`. The `path` argument is used to address the
## leaf vertex with the payload. It is stored or updated on the database
## accordingly.
##
var
path = NibblesBuf.fromBytes(path)
cur = root
(vtx, _) = db.getVtxRc((root, cur)).valueOr:
if error != GetVtxNotFound:
return err(error)
# We're at the root vertex and there is no data - this must be a fresh
# VertexID!
return ok (db.layersPutLeaf((root, cur), path, payload), nil, nil)
vids: ArrayBuf[NibblesBuf.high + 1, VertexID]
vtxs: ArrayBuf[NibblesBuf.high + 1, VertexRef]
template resetKeys() =
# Reset cached hashes of touched verticies
for i in 2..vids.len:
db.layersResKey((root, vids[^i]), vtxs[^i])
while path.len > 0:
# Clear existing merkle keys along the traversal path
vids.add cur
vtxs.add vtx
let n = path.sharedPrefixLen(vtx.pfx)
case vtx.vType
of Leaf:
let res =
if n == vtx.pfx.len:
# Same path - replace the current vertex with a new payload
if vtx.lData == payload:
return err(MergeNoAction)
let leafVtx = if root == VertexID(1):
var payload = payload.dup()
# TODO can we avoid this hack? it feels like the caller should already
# have set an appropriate stoID - this "fixup" feels risky,
# specially from a caching point of view
payload.stoID = vtx.lData.stoID
db.layersPutLeaf((root, cur), path, payload)
else:
db.layersPutLeaf((root, cur), path, payload)
(leafVtx, nil, nil)
else:
# Turn leaf into a branch (or extension) then insert the two leaves
# into the branch
let branch = VertexRef(vType: Branch, pfx: path.slice(0, n), startVid: db.vidFetch(16))
let other = block: # Copy of existing leaf node, now one level deeper
let local = branch.setUsed(vtx.pfx[n], true)
db.layersPutLeaf((root, local), vtx.pfx.slice(n + 1), vtx.lData)
let leafVtx = block: # Newly inserted leaf node
let local = branch.setUsed(path[n], true)
db.layersPutLeaf((root, local), path.slice(n + 1), payload)
# Put the branch at the vid where the leaf was
db.layersPutVtx((root, cur), branch)
# We need to return vtx here because its pfx member hasn't yet been
# sliced off and is therefore shared with the hike
(leafVtx, vtx, other)
resetKeys()
return ok(res)
of Branch:
if vtx.pfx.len == n:
# The existing branch is a prefix of the new entry
let
nibble = path[vtx.pfx.len]
next = vtx.bVid(nibble)
if next.isValid:
cur = next
path = path.slice(n + 1)
vtx =
if leaf.isSome and leaf[].isValid and leaf[].pfx == path:
leaf[]
else:
(?db.getVtxRc((root, next)))[0]
else:
# There's no vertex at the branch point - insert the payload as a new
# leaf and update the existing branch
let brDup = vtx.dup()
let local = brDup.setUsed(nibble, true)
db.layersPutVtx((root, cur), brDup)
let
leafVtx = db.layersPutLeaf((root, local), path.slice(n + 1), payload)
resetKeys()
return ok((leafVtx, nil, nil))
else:
# Partial path match - we need to split the existing branch at
# the point of divergence, inserting a new branch
let branch = VertexRef(vType: Branch, pfx: path.slice(0, n), startVid: db.vidFetch(16))
block: # Copy the existing vertex and add it to the new branch
let local = branch.setUsed(vtx.pfx[n], true)
db.layersPutVtx(
(root, local),
VertexRef(vType: Branch, pfx: vtx.pfx.slice(n + 1), startVid: vtx.startVid, used: vtx.used),
)
let leafVtx = block: # add the new entry
let local = branch.setUsed(path[n], true)
db.layersPutLeaf((root, local), path.slice(n + 1), payload)
db.layersPutVtx((root, cur), branch)
resetKeys()
return ok((leafVtx, nil, nil))
err(MergeHikeFailed)
# ------------------------------------------------------------------------------
# Public functions
# ------------------------------------------------------------------------------
proc mergeAccountRecord*(
db: AristoDbRef; # Database, top layer
accPath: Hash32; # Even nibbled byte path
accRec: AristoAccount; # Account data
): Result[bool,AristoError] =
## Merge the key-value-pair argument `(accKey,accRec)` as an account
## ledger value, i.e. the the sub-tree starting at `VertexID(1)`.
##
## On success, the function returns `true` if the `accRec` argument was
## not on the database already or different from `accRec`, and `false`
## otherwise.
##
let
pyl = LeafPayload(pType: AccountData, account: accRec)
updated = db.mergePayloadImpl(
VertexID(1), accPath.data, db.cachedAccLeaf(accPath), pyl).valueOr:
if error == MergeNoAction:
return ok false
return err(error)
# Update leaf cache both of the merged value and potentially the displaced
# leaf resulting from splitting a leaf into a branch with two leaves
db.layersPutAccLeaf(accPath, updated[0])
if updated[1].isValid:
let otherPath = Hash32(getBytes(
NibblesBuf.fromBytes(accPath.data).replaceSuffix(updated[1].pfx)))
db.layersPutAccLeaf(otherPath, updated[2])
ok true
proc mergeStorageData*(
db: AristoDbRef; # Database, top layer
accPath: Hash32; # Needed for accounts payload
stoPath: Hash32; # Storage data path (aka key)
stoData: UInt256; # Storage data payload value
): Result[void,AristoError] =
## Store the `stoData` data argument on the storage area addressed by
## `(accPath,stoPath)` where `accPath` is the account key (into the MPT)
## and `stoPath` is the slot path of the corresponding storage area.
##
var accHike: Hike
db.fetchAccountHike(accPath,accHike).isOkOr:
return err(MergeStoAccMissing)
let
stoID = accHike.legs[^1].wp.vtx.lData.stoID
# Provide new storage ID when needed
useID =
if stoID.isValid: stoID # Use as is
elif stoID.vid.isValid: (true, stoID.vid) # Re-use previous vid
else: (true, db.vidFetch()) # Create new vid
mixPath = mixUp(accPath, stoPath)
# Call merge
pyl = LeafPayload(pType: StoData, stoData: stoData)
updated = db.mergePayloadImpl(
useID.vid, stoPath.data, db.cachedStoLeaf(mixPath), pyl).valueOr:
if error == MergeNoAction:
assert stoID.isValid # debugging only
return ok()
return err(error)
# Mark account path Merkle keys for update
db.layersResKeys(accHike)
# Update leaf cache both of the merged value and potentially the displaced
# leaf resulting from splitting a leaf into a branch with two leaves
db.layersPutStoLeaf(mixPath, updated[0])
if updated[1].isValid:
let otherPath = Hash32(getBytes(
NibblesBuf.fromBytes(stoPath.data).replaceSuffix(updated[1].pfx)))
db.layersPutStoLeaf(mixUp(accPath, otherPath), updated[2])
if not stoID.isValid:
# Make sure that there is an account that refers to that storage trie
let leaf = accHike.legs[^1].wp.vtx.dup # Dup on modify
leaf.lData.stoID = useID
db.layersPutAccLeaf(accPath, leaf)
db.layersPutVtx((VertexID(1), accHike.legs[^1].wp.vid), leaf)
ok()
# ------------------------------------------------------------------------------
# End
# ------------------------------------------------------------------------------