Jacek Sieka 188d689d9d
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.

Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.

Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.

This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.

Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.

When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.

* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased

All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).

With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.

Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 11:08:37 +00:00

330 lines
9.6 KiB
Nim

# nimbus-eth1
# Copyright (c) 2023-2024 Status Research & Development GmbH
# Licensed under either of
# * Apache License, version 2.0, ([LICENSE-APACHE](LICENSE-APACHE) or
# http://www.apache.org/licenses/LICENSE-2.0)
# * MIT license ([LICENSE-MIT](LICENSE-MIT) or
# http://opensource.org/licenses/MIT)
# at your option. This file may not be copied, modified, or distributed
# except according to those terms.
## Rocksdb backend for Aristo DB
## =============================
##
## The iterators provided here are currently available only by direct
## backend access
## ::
## import
## aristo/aristo_init,
## aristo/aristo_init/aristo_rocksdb
##
## let rc = AristoDb.init(BackendRocksDB, "/var/tmp")
## if rc.isOk:
## let be = rc.value.to(RdbBackendRef)
## for (n, key, vtx) in be.walkVtx:
## ...
##
{.push raises: [].}
import
eth/common,
rocksdb,
results,
../aristo_desc,
../aristo_desc/desc_backend,
../aristo_blobify,
./init_common,
./rocks_db/[rdb_desc, rdb_get, rdb_init, rdb_put, rdb_walk],
../../opts
const
extraTraceMessages = false
## Enabled additional logging noise
type
RdbBackendRef* = ref object of TypedBackendRef
rdb: RdbInst ## Allows low level access to database
RdbPutHdlRef = ref object of TypedPutHdlRef
when extraTraceMessages:
import chronicles
logScope:
topics = "aristo-backend"
# ------------------------------------------------------------------------------
# Private helpers
# ------------------------------------------------------------------------------
proc newSession(db: RdbBackendRef): RdbPutHdlRef =
new result
result.TypedPutHdlRef.beginSession db
proc getSession(hdl: PutHdlRef; db: RdbBackendRef): RdbPutHdlRef =
hdl.TypedPutHdlRef.verifySession db
hdl.RdbPutHdlRef
proc endSession(hdl: PutHdlRef; db: RdbBackendRef): RdbPutHdlRef =
hdl.TypedPutHdlRef.finishSession db
hdl.RdbPutHdlRef
# ------------------------------------------------------------------------------
# Private functions: interface
# ------------------------------------------------------------------------------
proc getVtxFn(db: RdbBackendRef): GetVtxFn =
result =
proc(rvid: RootedVertexID, flags: set[GetVtxFlag]): Result[VertexRef,AristoError] =
# Fetch serialised data record
let vtx = db.rdb.getVtx(rvid, flags).valueOr:
when extraTraceMessages:
trace logTxt "getVtxFn() failed", rvid, error=error[0], info=error[1]
return err(error[0])
if vtx.isValid:
return ok(vtx)
err(GetVtxNotFound)
proc getKeyFn(db: RdbBackendRef): GetKeyFn =
result =
proc(rvid: RootedVertexID): Result[HashKey,AristoError] =
# Fetch serialised data record
let key = db.rdb.getKey(rvid).valueOr:
when extraTraceMessages:
trace logTxt "getKeyFn: failed", rvid, error=error[0], info=error[1]
return err(error[0])
if key.isValid:
return ok(key)
err(GetKeyNotFound)
proc getTuvFn(db: RdbBackendRef): GetTuvFn =
result =
proc(): Result[VertexID,AristoError]=
# Fetch serialised data record.
let data = db.rdb.getAdm(AdmTabIdTuv).valueOr:
when extraTraceMessages:
trace logTxt "getTuvFn: failed", error=error[0], info=error[1]
return err(error[0])
# Decode data record
if data.len == 0:
return ok VertexID(0)
# Decode data record
result = data.deblobify VertexID
proc getLstFn(db: RdbBackendRef): GetLstFn =
result =
proc(): Result[SavedState,AristoError]=
# Fetch serialised data record.
let data = db.rdb.getAdm(AdmTabIdLst).valueOr:
when extraTraceMessages:
trace logTxt "getLstFn: failed", error=error[0], info=error[1]
return err(error[0])
# Decode data record
data.deblobify SavedState
# -------------
proc putBegFn(db: RdbBackendRef): PutBegFn =
result =
proc(): Result[PutHdlRef,AristoError] =
db.rdb.begin()
ok db.newSession()
proc putVtxFn(db: RdbBackendRef): PutVtxFn =
result =
proc(hdl: PutHdlRef; rvid: RootedVertexID; vtx: VertexRef) =
let hdl = hdl.getSession db
if hdl.error.isNil:
db.rdb.putVtx(rvid, vtx).isOkOr:
hdl.error = TypedPutHdlErrRef(
pfx: VtxPfx,
vid: error[0],
code: error[1],
info: error[2])
proc putKeyFn(db: RdbBackendRef): PutKeyFn =
result =
proc(hdl: PutHdlRef; rvid: RootedVertexID, key: HashKey) =
let hdl = hdl.getSession db
if hdl.error.isNil:
db.rdb.putKey(rvid, key).isOkOr:
hdl.error = TypedPutHdlErrRef(
pfx: KeyPfx,
vid: error[0],
code: error[1],
info: error[2])
proc putTuvFn(db: RdbBackendRef): PutTuvFn =
result =
proc(hdl: PutHdlRef; vs: VertexID) =
let hdl = hdl.getSession db
if hdl.error.isNil:
if vs.isValid:
db.rdb.putAdm(AdmTabIdTuv, vs.blobify.data()).isOkOr:
hdl.error = TypedPutHdlErrRef(
pfx: AdmPfx,
aid: AdmTabIdTuv,
code: error[1],
info: error[2])
return
proc putLstFn(db: RdbBackendRef): PutLstFn =
result =
proc(hdl: PutHdlRef; lst: SavedState) =
let hdl = hdl.getSession db
if hdl.error.isNil:
let data = lst.blobify.valueOr:
hdl.error = TypedPutHdlErrRef(
pfx: AdmPfx,
aid: AdmTabIdLst,
code: error)
return
db.rdb.putAdm(AdmTabIdLst, data).isOkOr:
hdl.error = TypedPutHdlErrRef(
pfx: AdmPfx,
aid: AdmTabIdLst,
code: error[1],
info: error[2])
proc putEndFn(db: RdbBackendRef): PutEndFn =
result =
proc(hdl: PutHdlRef): Result[void,AristoError] =
let hdl = hdl.endSession db
if not hdl.error.isNil:
when extraTraceMessages:
case hdl.error.pfx:
of VtxPfx, KeyPfx: trace logTxt "putEndFn: vtx/key failed",
pfx=hdl.error.pfx, vid=hdl.error.vid, error=hdl.error.code
of AdmPfx: trace logTxt "putEndFn: admin failed",
pfx=AdmPfx, aid=hdl.error.aid.uint64, error=hdl.error.code
of Oops: trace logTxt "putEndFn: oops",
pfx=hdl.error.pfx, error=hdl.error.code
db.rdb.rollback()
return err(hdl.error.code)
# Commit session
db.rdb.commit().isOkOr:
when extraTraceMessages:
trace logTxt "putEndFn: failed", error=($error[0]), info=error[1]
return err(error[0])
ok()
proc closeFn(db: RdbBackendRef): CloseFn =
result =
proc(eradicate: bool) =
db.rdb.destroy(eradicate)
# ------------------------------------------------------------------------------
# Private functions: hosting interface changes
# ------------------------------------------------------------------------------
proc putBegHostingFn(db: RdbBackendRef): PutBegFn =
result =
proc(): Result[PutHdlRef,AristoError] =
db.rdb.begin()
if db.rdb.trgWriteEvent(db.rdb.session):
ok db.newSession()
else:
when extraTraceMessages:
trace logTxt "putBegFn: guest trigger aborted session"
db.rdb.rollback()
err(RdbGuestInstanceAborted)
# ------------------------------------------------------------------------------
# Public functions
# ------------------------------------------------------------------------------
proc rocksDbBackend*(
path: string;
opts: DbOptions;
dbOpts: DbOptionsRef;
cfOpts: ColFamilyOptionsRef;
guestCFs: openArray[ColFamilyDescriptor];
): Result[(BackendRef, seq[ColFamilyReadWrite]),AristoError] =
let db = RdbBackendRef(
beKind: BackendRocksDB)
# Initialise RocksDB
let oCfs = block:
let rc = db.rdb.init(path, opts, dbOpts, cfOpts, guestCFs)
if rc.isErr:
when extraTraceMessages:
trace logTxt "constructor failed",
error=rc.error[0], info=rc.error[1]
return err(rc.error[0])
rc.value()
db.getVtxFn = getVtxFn db
db.getKeyFn = getKeyFn db
db.getTuvFn = getTuvFn db
db.getLstFn = getLstFn db
db.putBegFn = putBegFn db
db.putVtxFn = putVtxFn db
db.putKeyFn = putKeyFn db
db.putTuvFn = putTuvFn db
db.putLstFn = putLstFn db
db.putEndFn = putEndFn db
db.closeFn = closeFn db
ok((db, oCfs))
proc rocksDbSetEventTrigger*(
be: BackendRef;
hdl: RdbWriteEventCb;
): Result[void,AristoError] =
## Store event trigger. This also changes the backend type.
if hdl.isNil:
err(RdbBeWrTriggerNilFn)
else:
let db = RdbBackendRef(be)
db.rdb.trgWriteEvent = hdl
db.beKind = BackendRdbHosting
db.putBegFn = putBegHostingFn db
ok()
proc dup*(db: RdbBackendRef): RdbBackendRef =
## Duplicate descriptor shell as needed for API debugging
new result
init_common.init(result[], db[])
result.rdb = db.rdb
# ------------------------------------------------------------------------------
# Public iterators (needs direct backend access)
# ------------------------------------------------------------------------------
iterator walkVtx*(
be: RdbBackendRef;
kinds = {Branch, Leaf};
): tuple[evid: RootedVertexID, vtx: VertexRef] =
## Variant of `walk()` iteration over the vertex sub-table.
for (rvid, vtx) in be.rdb.walkVtx(kinds):
yield (rvid, vtx)
iterator walkKey*(
be: RdbBackendRef;
): tuple[rvid: RootedVertexID, key: HashKey] =
## Variant of `walk()` iteration over the Markle hash sub-table.
for (rvid, data) in be.rdb.walkKey:
let lid = HashKey.fromBytes(data).valueOr:
continue
yield (rvid, lid)
# ------------------------------------------------------------------------------
# End
# ------------------------------------------------------------------------------