* CoreDb: remove PHK tries
why:
There is no general use anymore for an MPT with a pre-hashed key. It
was used to resemble the `SecureHexaryTrie` logic from the legacy DB.
The only pace where this is needed is the `Leger` which uses a
a distinct MPT version anyway (see `distinct_ledgers.nim`.)
* Rename `CoreDx*` -> `CoreDb*`
why:
The naming `CoreDx*` was used to differentiate the new CoreDb API from
the legacy API which had descriptors named `CoreDb*`.
* Provide dedicated functions for fetching accounts and storage trees
why:
Different prototypes for each class `account`, `generic` and
`storage`.
* Remove `fetchPayload()` and other cruft from API, `aristo_fetch`, etc.
* Fix typos, debugging left overs, comments
For the block cache to be shared between column families, the options
instance must be shared between the various column families being
created. This also ensures that there is only one source of truth for
configuration options instead of having two different sets depending on
how the tables were initialized.
This PR also removes the re-opening mechanism which can double startup
time - every time the database is opened, the log is replayed - a large
log file will take a long time to open.
Finally, several options got correclty implemented as column family
options, including an one that puts a hash index in the SST files.
* Provide dedicated functions for deleteing accounts and storage trees
why:
Storage trees are always linked to an account, so there is no need
for an application to fiddle about (e.g. re-cycling, unlinking)
storage tree vertex IDs.
* Remove `delete()` and other cruft from API, `aristo_delete`, etc.
* clean up delete functions
details:
The delete implementations `deleteImpl()` and `delTreeImpl()` do not
need to be super generic anymore as all the edge cases are covered by
the specialised `deleteAccountPayload()`, `deleteGenericData()`, etc.
* Avoid unnecessary re-calculations of account keys
why:
The function `registerAccountForUpdate()` did extract the storage ID
(if any) and automatically marked the Merkle keys along the account
path for re-hashing.
This would also apply if there was later detected that the account
or the storage tree did not need to be updated.
So the `registerAccountForUpdate()` function was split into a part
which retrieved the storage ID, and another one which marked the
Merkle keys for re-calculation to be applied only when needed.
* Remove unused `merge*()` functions (for production)
details:
Some functionality moved to test suite
* Make sure that only `AccountData` leaf type is exactly used on VertexID(1)
* clean up payload type
* Provide dedicated functions for merging accounts and storage trees
why:
Storage trees are always linked to an account, so there is no need
for an application to fiddle about (e.e. creating, re-cycling) with
storage tree vertex IDs.
* CoreDb: Disable tracer functionality
why:
Must be updated to accommodate new/changed `Aristo` functions.
* CoreDb: Use new `mergeXXX()` functions
why:
Makes explicit vertex ID management obsolete for creating new
storage trees.
* Remove `mergePayload()` and other cruft from API, `aristo_merge`, etc.
* clean up merge functions
details:
The merge implementation `mergePayloadImpl()` does not need to be super
generic anymore as all the edge cases are covered by the specialised
functions `mergeAccountPayload()`, `mergeGenericData()`, and
`mergeStorageData()`.
* No tracer available at the moment, so disable offending tests
The state root computation here is one of the major hotspots in block
processing - in the cases the code only needs to know if it's empty or
not, it can be done a lot faster.
Adding a separate function for this looks fragile and should probably be
revisited.
* Remove AccountStateDB
AccountStateDB should no longer be used.
It's usage have been reduce to read only operations.
Replace it with LedgerRef to reduce maintenance burden.
* remove extra spaces
Co-authored-by: tersec <tersec@users.noreply.github.com>
---------
Co-authored-by: tersec <tersec@users.noreply.github.com>
When performing block import, we can batch state root verifications and
header checks, doing them only once per chunk of blocks, assuming that
the other blocks in the batch are valid by extension.
When we're not generating receipts, we can also skip per-transaction
state root computation pre-byzantium, which is what provides a ~20%
speedup in this PR, at least on those early blocks :)
We also stop storing transactions, receipts and uncles redundantly when
importing from era1 - there is no need to waste database storage on this
when we can load it from the era1 file (eventually).
State lookups potentially trigger expensive re-hashings - this is the
first of several steps to remove the unnecessary ones from the general
flow of block processing
* avoid re-reading parent block header from database when it's already
in memory
* Fix initialiser
why:
Possible crash (app profiling, tracer etc.)
* Update column family options processing
why:
Same for kvt as for aristo
* Move `AristoDbDualRocks` backend type to the test suite
why:
So it is not available for production
* Fix typos in API jump table
why:
Used for tracing and app profiling only. Needed some update
* Purged CoreDb legacy API
why:
Not needed anymore, was transitionary and disabled.
* Rename `flush` argument to `eradicate` in a DB close context
why:
The word `eradicate` leaves no doubt what is meant
* Rename `stoFlush()` -> `stoDelete()`
* Rename `core_apps_newapi` -> `core_apps` (not so new anymore)
* Bump nim-eth, nim-web3, nimbus-eth2
- Replace std.Option with results.Opt
- Fields name changes
* More fixes
* Fix Portal stream async raises and portal testnet Opt usage
* Bump eth + nimbus-eth2 + more fixes related to eth_types changes
* Fix in utp test app and nimbus-eth2 bump
* Fix test_blockchain_json rebase conflict
* Fix EVMC block_timestamp conversion plus commentary
---------
Co-authored-by: kdeme <kim.demey@gmail.com>
* bump rockdb
* Rename `KVT` objects related to filters according to `Aristo` naming
details:
filter* => delta*
roFilter => balancer
* Compulsory error handling if `persistent()` fails
* Add return code to `reCentre()`
why:
Might eventually fail if re-centring is blocked. Some logic will be
added in subsequent patch sets.
* Add column families from earlier session to rocksdb in opening procedure
why:
All previously used CFs must be declared when re-opening an existing
database.
* Update `init()` and add rocksdb `reinit()` methods for changing parameters
why:
Opening a set column families (with different open options) must span
at least the ones that are already on disk.
* Provide write-trigger-event interface into `Aristo` backend
why:
This allows to save data from a guest application (think `KVT`) to
get synced with the write cycle so the guest and `Aristo` save all
atomically.
* Use `KVT` with new column family interface from `Aristo`
* Remove obsolete guest interface
* Implement `KVT` piggyback on `Aristo` backend
* CoreDb: Add separate `KVT`/`Aristo` backend mode for debugging
* Remove `rocks_db` import from `persist()` function
why:
Some systems (i.p `fluffy` and friends) use the `Aristo` memory
backend emulation and do not link against rocksdb when building the
application. So this should fix that problem.
This PR consolidates the split header-body sequences into a single EthBlock
sequence and cleans up the fallout from that which significantly reduces
block processing overhead during import thanks to less garbage collection
and fewer copies of things all around.
Notably, since the number of headers must always match the number of bodies,
we also get rid of a pointless degree of freedom that in the future could
introduce unnecessary bugs.
* only read header and body from era file
* avoid several unnecessary copies along the block processing way
* simplify signatures, cleaning up unused arguemnts and returns
* use `stew/assign2` in a few strategic places where the generated
nim assignent is slow and add a few `move` to work around poor
analysis in nim 1.6 (will need to be revisited for 2.0)
```
stats-20240607_2223-a814aa0b.csv vs stats-20240608_0714-21c1d0a9.csv
bps_x bps_y tps_x tps_y bpsd tpsd timed
block_number
(498305, 713245] 1,540.52 1,809.73 2,361.58 2775.340189 17.63% 17.63% -14.92%
(713245, 928185] 730.36 865.26 1,715.90 2028.973852 18.01% 18.01% -15.21%
(928185, 1143126] 663.03 789.10 2,529.26 3032.490771 19.79% 19.79% -16.28%
(1143126, 1358066] 393.46 508.05 2,152.50 2777.578119 29.13% 29.13% -22.50%
(1358066, 1573007] 370.88 440.72 2,351.31 2791.896052 18.81% 18.81% -15.80%
(1573007, 1787947] 283.65 335.11 2,068.93 2441.373402 17.60% 17.60% -14.91%
(1787947, 2002888] 287.29 342.11 2,078.39 2474.179448 18.99% 18.99% -15.91%
(2002888, 2217828] 293.38 343.16 2,208.83 2584.77457 17.16% 17.16% -14.61%
(2217828, 2432769] 140.09 167.86 1,081.87 1296.336926 18.82% 18.82% -15.80%
blocks: 1934464, baseline: 3h13m1s, contender: 2h43m47s
bpsd (mean): 19.55%
tpsd (mean): 19.55%
Time (total): -29m13s, -15.14%
```
* Cleanup unneeded stateless and block witness code. Keeping MultiKeys which is used in the eth_getProofsByBlockNumber RPC endpoint which is needed for the Fluffy state network bridge.
* Rename generateWitness flag to collectWitnessData to better describe what the flag does. We only collect the keys of the touched accounts and storage slots but no block witness generation is supported for now.
* Move remaining stateless code into nimbus directory.
* Add vmstate parameter to ChainRef to fix test.
* Exclude *.in from check copyright year
---------
Co-authored-by: jangko <jangko128@gmail.com>
* Code cosmetics
* Re-org `aristo_merge`, internally split into sub-modules
why:
Became a burden for maintenance because it hosts two different
functionalities under the same merge paradigm: account/data merge
and snap proof merge where the latter produces a partial trie.
* Fix CoreDb tracer
* Ledger: fix potential account vs. storage tree sync problems
* Remove bound on the size of removable whole storage trees
* Activate `test_tracer_json`
* CoreDb: Remove crufty second/off-site KVT
why:
Was used to allow late `Clique` to store directly to disk
* CoreDb: Remove prune flag related functionality
why:
Is completely legacy stuff
* CoreDb: Remove dependence on legacy API (tests unsupported yet)
why:
Does not fully support Aristo
* Re-factoring `state_db` using new API
details:
Only minimum changes needed to compile `nimbus`
* Update tests and aux modules
* Turn off legacy API and remove `distinct_tries`
comment:
The legacy API has now cruft status, will be removed soon
* Fix copyright years
* Update rpc for verified proxy
---------
Co-authored-by: Jacek Sieka <jacek@status.im>
* Fix `blobify()` for `SavedState` object
why:
Have to treat varying sizes for `HashKey`, i.p. for an empty key which
has zero size.
* Store correct block number in `SavedState` record
why:
Stored `block-number - 1` for some obscure reason.
* Cosmetcs, docu
These options are there mainly to drive experiments, and are therefore
hidden.
One thing that this PR brings in is an initial set of caches and buffers for rocksdb - the set that I've been using during various performance tests to get to a viable baseline performance level.
* Remove all journal related stuff
* Refactor function names journal*() => delta*(), filter*() => delta*()
* remove `trg` fileld from `FilterRef`
why:
Same as `kMap[$1]`
* Re-type FilterRef.src as `HashKey`
why:
So it is directly comparable to `kMap[$1]`
* Moved `vGen[]` field from `LayerFinalRef` to `LayerDeltaRef`
why:
Then a separate `FilterRef` type is not needed, anymore
* Rename `roFilter` field in `AristoDbRef` => `balancer`
why:
New name more appropriate.
* Replace `FilterRef` by `LayerDeltaRef` type
why:
This allows to avoid copying into the `balancer` (see next patch set)
most of the time. Typically, only one instance is running on the backend
and the `balancer` is only used as a stage before saving data.
* Refactor way how to store data persistently
why:
Avoid useless copy when staging `top` layer for persistently saving to
backend.
* Fix copyright header?
* Add persistent last state stamp feature
why:
This allows to run `CoreDb` without journal
* Start `CoreDb` without journal
* Remove journal related functions from `CoredDb`
* Update TDD suite logger output format choices
why:
New format is not practical for TDD as it just dumps data across a wide
range (considerably larder than 80 columns.)
So the new format can be turned on by function argument.
* Update unit tests samples configuration
why:
Slightly changed the way to find the `era1` directory
* Remove compiler warnings (fix deprecated expressions and phrases)
* Update `Aristo` debugging tools
* Always update the `storageID` field of account leaf vertices
why:
Storage tries are weekly linked to an account leaf object in that
the `storageID` field is updated by the application.
Previously, `Aristo` verified that leaf objects make sense when passed
to the database. As a consequence
* the database was inconsistent for a short while
* the burden for correctness was all on the application which led
to delayed error handling which is hard to debug.
So `Aristo` will internally update the account leaf objects so that
there are no race conditions due to the storage trie handling
* Aristo: Let `stow()`/`persist()` bail out unless there is a `VertexID(1)`
why:
The journal and filter logic depends on the hash of the `VertexID(1)`
which is commonly known as the state root. This implies that all
changes to the database are somehow related to that.
* Make sure that a `Ledger` account does not overwrite the storage trie reference
why:
Due to the abstraction of a sub-trie (now referred to as column with a
hash describing its state) there was a weakness in the `Aristo` handler
where an account leaf could be overwritten though changing the validity
of the database. This has been changed and the database will now reject
such changes.
This patch fixes the behaviour on the application layer. In particular,
the column handle returned by the `CoreDb` needs to be updated by
the `Aristo` database state. This mitigates the problem that a storage
trie might have vanished or re-apperaed with a different vertex ID.
* Fix sub-trie deletion test
why:
Was originally hinged on `VertexID(1)` which cannot be wholesale
deleted anymore after the last Aristo update. Also, running with
`VertexID(2)` needs an artificial `VertexID(1)` for making `stow()`
or `persist()` work.
* Cosmetics
* Activate `test_generalstate_json`
* Temporarily `deactivate test_tracer_json`
* Fix copyright header
---------
Co-authored-by: jordan <jordan@dry.pudding>
Co-authored-by: Jacek Sieka <jacek@status.im>
* Attempt to roll back stateless mode implementation in a single PR
why:
+ Stateless mode is not fully working and in the way
+ Single PR should make it feasible to investigate for a possible
re-implementation
* Fix copyright year
* Fix annotation for exception (evmc mode)
* Update some docu & messages
* Remove cruft from the ledger modules
* Must not overwrite genesis data on an initialised database
why:
This will overwrite the global state of the Aristo single state DB.
Otherwise resuming at the last synced state becomes impossible.
* Provide latest block number from journal
why:
This relates the global state of the DB directly to the corresponding
block number.
* Implemented unit test providing DB pre-load and resume
why:
When deleting accounts while restoring the previous state, storage tries
must be deleted first. Otherwise a `DelDanglingStoTrie` error will occur
when trying to delete an account which refers to an active storage trie.
* Introduce wrapper type for EIP-4844 transactions
EIP-4844 blob sidecars are a concept that only exists in the mempool.
After inclusion of a transaction into an execution block, only the
versioned hash within the transaction remains. To improve type safety,
replace the `Transaction.networkPayload` member with a wrapper type
`PooledTransaction` that is used in contexts where blob sidecars exist.
* Bump nimbus-eth2 to 87605d08a7f9cfc3b223bd32143e93a6cdf351ac
* IPv6 'listen-address' in `nimbus_verified_proxy`
* Bump nim-libp2p to 21cbe3a91a70811522554e89e6a791172cebfef2
* Fix beacon_lc_bridge payload conversion and conf.listenAddress type
* Change nimbus_verified_proxy.asExecutionData param to SomeExecutionPayload
* Rerun nph to fix asExecutionData style format
* nimbus_verified_proxy listenAddress
* Use PooledTransaction in nimbus-eth1 tests
---------
Co-authored-by: jangko <jangko128@gmail.com>
* Aristo: Generalise alien/guest interface for piggiback on database
* Aristo: Code cosmetics
* CoreDb+Kvt: Update transaction API
why:
Use single addressable function `forkTx(backLevel: int)` as used
in `Aristo`. So `Kvt` can be synced simultaneously to `Aristo`.
also:
Refactored `kvt_tx.nim` in a similar fashion to `Aristo`.
* Kvt: Replace `LayerDelta` object by reference
why:
Will be needed when introducing filters
* Kvt: Remodel backend filter facility similar to `Aristo`
why:
This allows to operate on several KVT instances simultaneously.
* CoreDb+Kvt: Fix on-disk storage
why:
Overlooked name change: `stow()` => `persist()` for permanent storage
* Fix copyright headers
* Aristo: Rename journal related sources and functions
why:
Previously, the naming was hinged on the phrases `fifo`, `filter` etc.
which reflect the inner workings of cascaded filters. This was
unfortunate for reading/understanding the source code for actions where
the focus is the journal as a whole.
* Aristo: Fix buffer overflow (path length truncating error)
* Aristo: Tighten `hikeUp()` stop check, update error code
why:
Detect dangling vertex links. These are legit with `snap` sync
processing but not with regular processing.
* Aristo: Raise assert in regular mode `merge()` at a dangling link/edge
why:
With `snap` sync processing, partial trees are ok and can be amended.
Not so in regular mode.
Previously there was only a debug message when a non-legit dangling edge
was encountered.
* Aristo: Make sure that vertices are copied before modification
why:
Otherwise vertices from lower layers might also be modified
* Aristo: Fix relaxed mode for validity checker `check()`
* Remove cruft
* Aristo: Update API for transaction handling
details:
+ Split `aristo_tx.nim` into sub-modules
+ Split `forkWith()` into `findTx()` + `forkTx()`
+ Removed `forkTop()`, `forkBase()` (now superseded by new `forkTx()`)
* CoreDb+Aristo: Fix initialiser (missing methods)
* Aristo: Allow to define/set `FilterID` for journal filter records
why:
After some changes, the `FilterID` is isomorphic to the `BlockNumber`
scalar (well, the first 2^64 entries of a `BlockNumber`.)
The needed change for `FilterID` is that the `FilterID(0)` value is
valid part of the `FilterID` scalar. A non-valid `FilterID` entry is
represented by `none(FilterID)`.
* Aristo: Split off function `persist()` as persistent version of `stow()`
why:
In production, `stow(persistent=false,..)` is currently unused. So,
using `persist()` rather than `stow(persistent=true,..)` improves
readability and is better to maintain.
* CoreDb+Aristo: Store block numbers in journal records
why:
This makes journal records searchable by block numbers
* Aristo: Rename some journal related functions
why:
The name *journal* is more appropriate to api functions than something
with *fifo* or *filter*.
* CoreDb+Aristo: Update last/oldest journal state retrieval
* CoreDb+Aristo: Register block number with state root in journal
why:
No need anymore for extra lookup table `stRootToBlockNum` which maps
a storage root -> block number.
* Aristo: Remove unused function `getFilUbe()` from api
* CoreDb: Remove now unused virtual table `stRootToBlockNum`
why:
Was used to map a state root to a block number. This functionality
is now embedded into the recovery journal backend.
* Turn of API tracking (will fail on `fluffy`)
* Aristo: Code cosmetics, e.g. update some CamelCase names
* CoreDb+Aristo: Provide oldest known state root implied
details:
The Aristo journal allows to recover earlier but not all state roots.
* Aristo: Fix journal backward index operator, e.g. `[^1]`
* Aristo: Fix journal updater
why:
The `fifosStore()` store function slightly misinterpreted the update
instructions when translation is to database `put()` functions. The
effect was that the journal was ever growing due to stale entries which
were never deleted.
* CoreDb+Aristo: Provide utils for purging stale data from the KVT
details:
See earlier patch, not all state roots are available. This patch
provides a mapping from some state root to a block number and allows to
remove all KVT data related to a particular block number
* Aristo+Kvt: Implement a clean up schedule for expired data in KVT
why:
For a single state ledger like `Aristo`, there is only a limited
backlog of states. So KVT data (i.e. headers etc.) are cleaned up
regularly
* Fix copyright year
* Code cosmetics
* Aristo+Kvt: Fix api wrappers
why:
Api setup killed the backend descriptor when backend mapping was
disabled.
* Aristo: Implement masked profiling entries
why:
Database backend should be listed but not counted in tally
* CoreDb: Simplify backend() methods
why:
DBMS backend access Was provided very early and over engineered. Now
there are only two backend machines, one for `Kvt` and the other one
for an `Mpt` available only via new API.
* CoreDb: Code cleanup regarding descriptor types
* CoreDb: Refactor/redefine `persistent()` methods
why:
There were `persistent()` methods for any type of caching storage
facilities `Kvt`, `Mpt`, `Phk`, and `Acc`. Now there is only a single
`persistent()` method storing all facilities in tandem (similar to
how transactions work.)
For non shared `Kvt` tables, there is now an extra storage method
`saveOffSite()`.
* CoreDb lingo update: `trie` becomes `column`
why:
Notion of a `trie` is pretty much hidden by the new `CoreDb` api.
Revealed are sort of database columns for accounts an storage data,
any of which have an internal state represented by a Keccack hash.
So a `trie` or `MPT` becomes a `column` and a `rootHash` becomes a
column state.
* Aristo: rename backend filed `filters` => `journal`
* Update full sync logging
details:
+ Disable eth handler noise while syncing
+ Log journal depth (if available)
* Fix copyright year
* Fix cruft and unwanted imports
* Update README
* Nimbus-main: replaced `PruneMode` options by `ChainDbMode` options
details:
For the legacy database, this changes the phrase
- `conf.pruneMode == PruneMode.Full` to the expression
+ `conf.chainDbMode == ChainDbMode.Prune`.
* Fix issues moaned about by NIM compiler
* Fix copyright year
* Aristo+RocksDB: Update backend drivers
why:
RocksDB update allows use some of the newly provided methods which
were previously implemented by using the very C backend (for the lack
of NIM methods.)
* Aristo+RocksDB: Simplify drivers wrapper
* Kvt: Update backend drivers and wrappers similar to `Aristo`
* Aristo+Kvm: Use column families for RocksDB
* Aristo+MemoryDB: Code cosmetics
* Aristo: Provide guest column family for export
why:
So `Kvt` can piggyback on `Aristo` so there avoiding to run a second
DBMS system in parallel.
* Kvt: Provide import mechanism for RoksDB guest column family
why:
So `Kvt` can piggyback on `Aristo` so there avoiding to run a second
DBMS system in parallel.
* CoreDb+Aristo: Run persistent `Kvt` DB piggybacked on `Aristo`
why:
Avoiding to run two DBMS systems in parallel.
* Fix copyright year
* Ditto
* Kvt: Update API hooks
* Aristo: Generalised merging snap proofs, now for multiple state roots
why:
This accommodates pre-loading partial tries for unit tests
* Aristo: Update some unit tests
* CoreDb+Aristo: Re-factor tracer
why:
Was bonkers anyway. The main change is that the trace journal is now
kept in a way similar to a transaction layer so that it can predictably
interact with DB transactions.
* Ledger: Debugging helper
* Update tracer unit test applicable for `Aristo`
* Fix copyright year
* Disable `dump()` function as compile time default
why:
This needs to pull in the `rocks_db` library at compile time.
* Remove cruft
* Docu/code cosmetics
* Aristo: Update `forkBase()`
why:
Was not up to the job
* Update/correct tracer for running against `Aristo`
details:
This patch makes sure that before creating a new `BaseVMState` the
`CoreDb` context is adjusted to accommodate for the state root that
is passed to the `BaseVMState` constructor.
* CpreDb+legacy: Always return current context with `ctxFromTx()`
why:
There was an experimental setting trying to find the node with the
proper setting in the KVT (not the hexary tie layer) which currently
does not work reliable, probably due to `Ledger` caching effects.
* Aristo: Provide descriptor fork based on search in transaction stack
details:
Try to find the tx that has a particular pair `(vertex-id,hash-key)`,
and by extension try filter and backend if the former fails.
* Cleanup & docu
* CoreDb+Aristo: Implement context re-position to earlier in-memory state
why:
It is a easy way to explore how there can be concurrent access to the
same backend storage DB with different view states. This one can access
an earlier state from the transaction stack.
* CoreDb+Aristo: Populate tracer stubs with real functionality
* Update `tracer.nim` to new API
why:
Legacy API does not sufficiently support `Aristo`
* Fix logging problems in tracer
details:
Debug logging turned off by default
* Fix function prototypes
* Add Copyright header
* Add tables import
why:
For older compiler versions on CI
* CoreDb+Aristo: Fix handler code
* Aristo+Kvt: Remove cruft
* Aristo+Kvt: The function `forkTop()` always provides a single transaction
why:
Previously it provided a single squashed tx only if there were any. Now
it will provide a blind one if there were none.
* Fix Copyright header
* CoreDb+Ledger: Update logging
why:
Use symbol `api` rather than `ctx` because the latter will be used
as name for particular objects
* CoreDb: Remove cruft
* CoreDb: Remove `TxID` support
why:
It is nowhere used and ugly implemented. The upcoming context layer
will be a cleaner alternative to use, instead should this particular
functionality be needed.
* CoreDb: Rearrange base methods in source code for better reading
* CoreDb+Aristo: Update API closures for better reading & maintenance
* CoreDb: Implement context layer for MPT
why:
On `Aristo` the context layer allows to manage different views on
the same backend database. This is an abstraction of the legacy
hexary trie which can be localised on a particular root nose.
details:
The `ctx` context provides the state (equiv. to state root) of the
database for MPT and account descriptors.
* Fix Copyright headers
* Aristo+Kvt: Fix backend `dup()` function in api setup
why:
Backend object is subject to an inheritance cascade which was not
taken care of, before. Only the base object was duplicated.
* Kvt: Simplify DB clone/peers management
* Aristo: Simplify DB clone/peers management
* Aristo: Adjust unit test for working with memory DB only
why:
This currently causes some memory corruption persumably in the
`libc` background layer.
* CoredDb+Kvt: Simplify API for KVT
why:
Simplified storage models (was over engineered) for better performance
and code maintenance.
* CoredDb+Aristo: Simplify API for `Aristo`
why:
Only single database state needed here. Accessing a similar state will
be implemented from outside this module using a context layer. This
gives better performance and improves code maintenance.
* Fix Copyright headers
* CoreDb: Turn off API tracking
why:
CI would ot go through. Was accidentally turned on.
* Aristo: Remove cruft
* Prettifying profile statistics printing & source code cosmetics
* Aristo/Kvt: API tools update
* CoreDb: Corrections, mostly API related
* CoreDb: Changed the tracer `logDb()` result
why:
Only the key-value table is used from the logger database
* CoreDb: Update legacy tracer
why:
The `contains()` directive did not correspond to `0 < get().len`
also:
Copy `CoreDb` meta settings like `trackLegaApi`, `trackNewApi`, etc. to
overlay tracer descriptor
* CoreDb: Extend/update tracer API
why:
Get ready for accommodating `Aristo` tracer
* Fix missing import
why:
Some CI compilers might have (cached?) a different NIM patch level
* Ditto
* Aristo/Kvt: Provide function hooks APIs
why:
These APIs can be used for installing tracers, profiling functoinality,
and other niceties on the databases.
* Aristo: Provide optional API profiling
details:
It basically is a re-implementation of the `CoreDb` profiling
implementation
* Kvt: Provide optional API profiling similar to `Aristo`
* CoreDb: Re-implementing profiling using `aristo_profile`
* Ledger: Re-implementing profiling using `aristo_profile`
* CoreDb: Update unit tests for maintainability
* update copyright dates
* Aristo: Update schedule runner for `hashify()`
why:
Width-first schedule walker overlooked resolvable vertex and ended in
a deadlock situation
* CoreDb+Aristo: Update error code for fringe condition
* Ledger: Remove redundant extra MPT hashing statements
why:
These statement were used for troubleshooting
* CoreDb: Couch medicine for legacy DB backend
why:
MPT will occasionally enter inconsistent states after deletion, some
dirty fix is randomly added to mitgate that.
* Added procs to get and store block witness in db and add generate-witness cli flag.
* Completed initial implementation of block witness storage.
* Added test to verify witness is persisted to db after call to persistBlock.
* Update getBlockWitness to return witness using Result type.
* Make generate witness parameter hidden.
* CoreDb: Test module with additional sample selector cmd line options
* Aristo: Do not automatically remove a storage trie with the account
why:
This is an unnecessary side effect. Rather than using an automatism, a
a storage root must be deleted manually.
* Aristo: Can handle stale storage root vertex IDs as empty IDs.
why:
This is currently needed for the ledger API supporting both, a legacy
and the `Aristo` database backend.
This feature can be disabled at compile time by re-setting the
`LOOSE_STORAGE_TRIE_COUPLING` flag in the `aristo_constants` module.
* CoreDb+Aristo: Flush/delete storage trie when deleting account
why:
On either backend, a deleted account leave a dangling storage trie on
the database.
For consistency nn the legacy backend, storage tries must not be
deleted as they might be shared by several accounts whereas on `Aristo`
they are always unique.
* Aristo: Update error return code
why:
Failing of `Aristo` function `delete()` might fail because there is
no such data item on the db. This must return a single error code
as is done with `fetch()`.
* Ledger: Better error handling
why:
The `expect()` clauses have been replaced by raising asserts indicating
the error from the database backend.
Also, `delete()` failures are legitimate if the item to delete does not
exist.
* Aristo: Delete function must always leave a label on DB for `hashify()`
why:
The `hashify()` uses the labels left bu `merge()` and `delete()` to
compile (and optimise) a scheduler for subsequent hashing.
Originally, the labels were not used for deleted entries and `delete()`
still had some edge case where the deletion label was not properly
handled.
* Aristo: Update `hashify()` scheduler, remove buggy optimisation
why:
Was left over from version without virtual state roots which did not
know about account payload leaf vertices referring to storage roots.
* Aristo: Label storage trie account in `delete()` similar to `merge()`
details;
The `delete()` function applied to a non-static state root (assumed
to be a storage root) will check the payload of an accounts leaf
and mark its Merkle keys to be re-checked when runninh `hashify()`
* Aristo: Clean up and re-org recycled vertex IDs in `hashify()`
why:
Re-organising the recycled vertex IDs list intends to reduce the size of the
list.
This list is organised as a LIFO (or stack.) By reorganising it in a way
so that the least vertex ID numbers are on top, the list will be kept
smaller as observed on some examples (less than 30%.)
* CoreDb: Accept storage trie deletion requests in non-initialised state
why:
Due to lazy initialisation, the root vertex ID might not yet exist. So
the `Aristo` database handlers would reject this call with an error and
this condition needs to be handled by the API (which realises the lazy
feature.)
* Cosmetics & code massage, prettify logging
* fix missing import
* CoreDb: Improve API and API tracking
why:
Now logs state roots where appropriate
* CoreDb: re-implement `CoreDbVidRef` => `CoreDbTrieRef`
why:
Instead of a root vertex ID wrapper, the purpose of this object type
has been upgrades to a sub-trie prototype.
caveat:
`Aristo` backend not fully functional, yet.
* CoreDb: Update `Aristo` backend
why:
Supports virtual sub-tries
* CoreDb: Account address tracking for `StorageTrie` virtual tries
details:
Supported with API tracking/logging
* CoreDb: Keep account address in payload object
why:
No need to provide extra address argument for `merge()`, also
provides tracking possibility for account debugging.
* Ledger: Update new API for `Aristo` specific storage trie handling
* CoreDb+Ledger: Update unit tests
* Fix copyright headers
* Aristo: Update unit test suite
* Aristo/Kvt: Fix iterators
why:
Generic iterators were not properly updated after backend change
* Aristo: Add sub-trie deletion functionality
why:
For storage tries linked to an account payload vertex ID, a the
whole storage trie needs to be deleted with the account.
* Aristo: Reserve vertex ID numbers for static custom state roots
why:
Static custom state roots may be controlled by an application,
e.g. for a receipt or a transaction root. The `Aristo` functions
are agnostic of what the static state roots are when different
from the internal tree vertex ID 1.
details;
The `merge()` function applied to a non-static state root (assumed
to be a storage root) will check the payload of an accounts leaf
and mark its Merkle keys to be re-checked.
* Aristo: Correct error code symbol
* Aristo: Update error code symbols
* Aristo: Code cosmetics/comments
* Aristo: Fix hashify schedule calculator
why:
Had a tendency to stop early leaving an incomplete job
* Aristo: Re-phrase `LayerDelta` and `LayerFinal` as object references
why:
Avoids copying in some cases
* Fix copyright header
* Aristo: Verify `leafTie.root` function argument for `merge()` proc
why:
Zero root will lead to inconsistent DB entry
* Aristo: Update failure condition for hash labels compiler `hashify()`
why:
Node need not be rejected as long as links are on the schedule. In
that case, `redo[]` is to become `wff.base[]` at a later stage.
This amends an earlier fix, part of #1952 by also testing against
the target nodes of the `wff.base[]` sets.
* Aristo: Add storage root glue record to `hashify()` schedule
why:
An account leaf node might refer to a non-resolvable storage root ID.
Storage root node chains will end up at the storage root. So the link
`storage-root->account-leaf` needs an extra item in the schedule.
* Aristo: fix error code returned by `fetchPayload()`
details:
Final error code is implied by the error code form the `hikeUp()`
function.
* CoreDb: Discard `createOk` argument in API `getRoot()` function
why:
Not needed for the legacy DB. For the `Arsto` DB, a lazy approach is
implemented where a stprage root node is created on-the-fly.
* CoreDb: Prevent `$$` logging in some cases
why:
Logging the function `$$` is not useful when it is used for internal
use, i.e. retrieving an an error text for logging.
* CoreDb: Add `tryHashFn()` to API for pretty printing
why:
Pretty printing must not change the hashification status for the
`Aristo` DB. So there is an independent API wrapper for getting the
node hash which never updated the hashes.
* CoreDb: Discard `update` argument in API `hash()` function
why:
When calling the API function `hash()`, the latest state is always
wanted. For a version that uses the current state as-is without checking,
the function `tryHash()` was added to the backend.
* CoreDb: Update opaque vertex ID objects for the `Aristo` backend
why:
For `Aristo`, vID objects encapsulate a numeric `VertexID`
referencing a vertex (rather than a node hash as used on the
legacy backend.) For storage sub-tries, there might be no initial
vertex known when the descriptor is created. So opaque vertex ID
objects are supported without a valid `VertexID` which will be
initalised on-the-fly when the first item is merged.
* CoreDb: Add pretty printer for opaque vertex ID objects
* Cosmetics, printing profiling data
* CoreDb: Fix segfault in `Aristo` backend when creating MPT descriptor
why:
Missing initialisation error
* CoreDb: Allow MPT to inherit shared context on `Aristo` backend
why:
Creates descriptors with different storage roots for the same
shared `Aristo` DB descriptor.
* Cosmetics, update diagnostic message items for `Aristo` backend
* Fix Copyright year
* Fix kvt headers
* Provide differential layers for KVT transaction stack
why:
Significant performance improvement
* Provide abstraction layer for database top cache layer
why:
This will eventually implemented as a differential database layers
or transaction layers. The latter is needed to improve performance.
behavioural changes:
Zero vertex and keys (i.e. delete requests) are not optimised out
until the last layer is written to the database.
* Provide differential layers for Aristo transaction stack
why:
Significant performance improvement
* Activate `LedgerRef` wrapper for `AccountsCache`
details:
`accounts_cache.nim` methods are indirectly processed by the wrapper
methods from `ledger.nim`.
This works for all sources except `test_state_db.nim` where the source
`accounts_cache.nim` is included (rather than imported) in order to
access objects privy to the very source.
* Provide facility to switch to a preselected `LedgerRef` type
details:
Can be set as suggestion when initialising `CommonRef`
* Update `CoreDb` test suite for better time tracking
details:
+ Allow time logging by pre-defined block intervals
+ Print `CoreDb`/`Ledger`profiling results (if enabled)
* Explicitly use shared `Kvt` table on `Ledger` and `Clique` lookup.
why:
Speeds up lookup time with `Aristo` backend. For writing `Clique` data,
the `Companion` model allows to write `Clique` data past the database
locked by evm transactions.
* Implement `CoreDb` profiling with API tracking
why:
Chasing time spent per APT procs ...
* Implement `Ledger` profiling with API tracking
why:
Chasing time spent per APT procs ...
* Always hashify when commiting or storing
why:
A dirty cache makes no sense when committing
* Make sure that a zero key is created when adding/updating vertices
why:
This is an error fix mainly for edge cases. A typical error was
that the root key got deleted when there were only a few vertices
left on the DB.
* Need all created and changed vertices zero-keyed on the cache
why:
A zero key (i.e. empty Merkle hash) indicates that a vertex key
needs to be updated. This would not be needed immediately after
a merge as there is an actual leaf path on the cache layer. But
after subsequent merge and delete operations this information
might get blurred.
* Re-org hashing algorithm
why:
Apart from errors, the previous implementation was too slow for
two reasons:
+ some control hashes were calculated for debugging (now all
verification is done in `aristo_check` module)
+ the leaf paths stored on the cache are used to build the
labelling (aka hashing) schedule; there paths were accumulated
over successive hash sessions although it is clear that all
keys were generated, already
* Fix copyright year
* Show elapsed times with enabled `CoreDb` API tracking
* Show elapsed times with enabled `LedgerRef` API tracking
* Reorg `CoreDb` auto destructors for `Aristo` DB
why:
While `Aristo` supports some parallelism for concurrent database access,
this comes with a price of management overhead. With a naive approach,
the auto-destructor will slow down execution because the ledger and
evm treat the database in a shared mode where a DB descriptor is just
created and thrown away shortly after.
This is reflected in the `Coredb` abstraction layer above `Aristo`/`Kvt`
where a few `Shared` type descriptors are cached and a shared reference
is returned rather than a disposable new object.
* For `CoreDb` support transaction level tracking
details:
This is mainly an extra for the legacy DB as `Aristo` and `Kvt` support
this already.
Also return an error on the legacy DB backend when `persistent()` is
called while there are transactions pending (the `persistent()` call
does nothing otherwise on the legacy backend.)
* Clear compiler warnings (remove unused variables etc.)
* Using different `tmp` directories for `Kvt` and `Aristo`
why:
Closing one database would leave the other set of directories
incomplete.
* Code cosmetics, silence compiler
* Fix typo `EMPTY_ROOT_HASH` vs. `EMPTY_CODE_HASH`
* Fix copyright years
* Split off `ReadOnlyStateDB` from `AccountStateDB` from `state_db.nim`
why:
Apart from testing, applications use `ReadOnlyStateDB` as an easy
way to access the accounts ledger. This is well supported by the
`Aristo` db, but writable mode is only parially supported.
The writable AccountStateDB` object for modifying accounts is not
used by production code.
So, for lecgacy and testing apps, the full support of the previous
`AccountStateDB` is now enabled by `import db/state_db/read_write`
and the `import db/state_db` provides read-only mode.
* Encapsulate `AccountStateDB` as `GenesisLedgerRef` or genesis creation
why:
`AccountStateDB` has poor support for `Aristo` and is not widely used
in favour of `AccountsLedger` (which will be abstracted as `ledger`.)
Currently, using other than the `AccountStateDB` ledgers within the
`GenesisLedgerRef` wrapper is experimental and test only. Eventually,
the wrapper should disappear so that the `Ledger` object (which
encapsulates `AccountsCache` and `AccountsLedger`) will prevail.
* For the `Ledger`, provide access to raw accounts `MPT`
why:
This gives to the `CoreDbMptRef` descriptor from the `CoreDb` (which is
the legacy version of CoreDxMptRef`.) For the new `ledger` API, the
accounts are based on the `CoreDxMAccRef` descriptor which uses a
particular sub-system for accounts while legacy applications use the
`CoreDbPhkRef` equivalent of the `SecureHexaryTrie`.
The only place where this feature will currently be used is the
`genesis.nim` source file.
* Fix `Aristo` bugs, missing boundary checks, typos, etc.
* Verify root vertex in `MPT` and account constructors
why:
Was missing so far, in particular the accounts constructor must
verify `VertexID(1)
* Fix include file
* Disable `TransactionID` related functions from `state_db.nim`
why:
Functions `getCommittedStorage()` and `updateOriginalRoot()` from
the `state_db` module are nowhere used. The emulation of a legacy
`TransactionID` type functionality is administratively expensive to
provide by `Aristo` (the legacy DB version is only partially
implemented, anyway).
As there is no other place where `TransactionID`s are used, they will
not be provided by the `Aristo` variant of the `CoreDb`. For the
legacy DB API, nothing will change.
* Fix copyright headers in source code
* Get rid of compiler warning
* Update Aristo code, remove unused `merge()` variant, export `hashify()`
why:
Adapt to upcoming `CoreDb` wrapper
* Remove synced tx feature from `Aristo`
why:
+ This feature allowed to synchronise transaction methods like begin,
commit, and rollback for a group of descriptors.
+ The feature is over engineered and not needed for `CoreDb`, neither
is it complete (some convergence features missing.)
* Add debugging helpers to `Kvt`
also:
Update database iterator, add count variable yield argument similar
to `Aristo`.
* Provide optional destructors for `CoreDb` API
why;
For the upcoming Aristo wrapper, this allows to control when certain
smart destruction and update can take place. The auto destructor works
fine in general when the storage/cache strategy is known and acceptable
when creating descriptors.
* Add update option for `CoreDb` API function `hash()`
why;
The hash function is typically used to get the state root of the MPT.
Due to lazy hashing, this might be not available on the `Aristo` DB.
So the `update` function asks for re-hashing the gurrent state changes
if needed.
* Update API tracking log mode: `info` => `debug
* Use shared `Kvt` descriptor in new Ledger API
why:
No need to create a new descriptor all the time
* Aristo: Provide key-value list signature calculator
detail:
Simple wrappers around `Aristo` core functionality
* Update new API for `CoreDb`
details:
+ Renamed new API functions `contains()` => `hasKey()` or `hasPath()`
which disables the `in` operator on non-boolean `contains()` functions
+ The functions `get()` and `fetch()` always return a not-found error if
there is no item, available. The new functions `getOrEmpty()` and
`mergeOrEmpty()` return an an empty `Blob` if there is no such key
found.
* Rewrite `core_apps.nim` using new API from `CoreDb`
* Use `Aristo` functionality for calculating Merkle signatures
details:
For debugging, the `VerifyAristoForMerkleRootCalc` can be set so
that `Aristo` results will be verified against the legacy versions.
* Provide general interface for Merkle signing key-value tables
details:
Export `Aristo` wrappers
* Activate `CoreDb` tests
why:
Now, API seems to be stable enough for general tests.
* Update `toHex()` usage
why:
Byteutils' `toHex()` is superior to `toSeq.mapIt(it.toHex(2)).join`
* Split `aristo_transcode` => `aristo_serialise` + `aristo_blobify`
why:
+ Different modules for different purposes
+ `aristo_serialise`: RLP encoding/decoding
+ `aristo_blobify`: Aristo database encoding/decoding
* Compacted representation of small nodes' links instead of Keccak hashes
why:
Ethereum MPTs use Keccak hashes as node links if the size of an RLP
encoded node is at least 32 bytes. Otherwise, the RLP encoded node
value is used as a pseudo node link (rather than a hash.) Such a node
is nor stored on key-value database. Rather the RLP encoded node value
is stored instead of a lode link in a parent node instead. Only for
the root hash, the top level node is always referred to by the hash.
This feature needed an abstraction of the `HashKey` object which is now
either a hash or a blob of length at most 31 bytes. This leaves two
ways of representing an empty/void `HashKey` type, either as an empty
blob of zero length, or the hash of an empty blob.
* Update `CoreDb` interface (mainly reducing logger noise)
* Fix copyright years (to make `Lint` happy)
* Make sure that storage tries are not pruned (by default) on the new Ledger API
why:
Pruning might kill some unwanted entries from storage tries ending up with an unstable database
leading to crashes.
* Implement `CoreDb` and `LedgerRef` API tracing
details:
+ Locally enabled at compile time via constants `ProvideCoreDbLegacyAPI`
and `EnableApiTracking` in either `base.nim` source
+ If enabled it can be selectively turned on/off via public switches in
the `CoreDb` descriptor.
* Allow suppressing opportunistic `ifNecessaryGetXxx()` functions
why:
Better troubleshooting when the system crashes (assertions will then
most probably happen outside an `async` function.)
* Provide TDD/debug facility for inspecting `persistBlocks()` working
detail:
+ Make sure that the last block of a test sample is the first batch
item in `persistBlocks()`.
+ Additionally, allow `AccountsCache` API tracing by setting the flag
`extraTraceMessages = true` in the file `accounts_cache.nim`
* Overload AccountsCache by abstraction wrapper
details:
Can facilitate CoreDb API switch, details in `ledger/README.md`.
* CoreDB: Re-org API
details:
Legacy API internally uses vertex ID for root node abstraction
* Cosmetics: Move some unit test helpers to common sub-directory
* Extract constant from `accouns_cache.nim` => `constants.nim`
* Fix tracer methods
why:
Logger dump data were wrongly dumped from the production database. This
caused an assert exception when iterating over the persistent database
(instead of the memory logger.) This event in turn was enabled after
fixing another inconsistency which just set up an empty iterator. Unit
tests failed to detect that.
* Split `core_db/base.nim` into several sources
* Rename `core_db/legacy.nim` => `core_db/legacy_db.nim`
* Update `CoreDb` API, dual methods returning `Result[]` or plain value
detail:
Plain value methods implemet the legacy API, they defect on error results
* Redesign `CoreDB` direct backend access
why:
Made the `backend` directive integral part of the API
* Discontinue providing unused or otherwise available functions
details:
+ setTransactionID() removed, not used and not easily replicable in Aristo
+ maybeGet() removed, available via direct backend access
+ newPhk() removed, never used & was experimental anyway
* Update/reorg backend API
why:
+ Added error print function `$$()`
+ General descriptor completion (and optional validation) via `bless()`
* Update `Aristo`/`Kvt` exception handling
why:
Avoid `CatchableError` exceptions, rather pass them as error code where
appropriate.
* More `CoreDB` compliant `Aristo` and `Kvt` methods
details:
+ Providing functions like `contains()`, `getVtxRc()` (returns `Result[]`).
+ Additional error code: `NotImplemented`
* Rewrite/reorg of Aristo DB constructor
why:
Previously used global object `DefaultQidLayoutRef` as default
initialiser. This object was created at compile time which lead to
non-gc safe functions.
* Update nimbus/db/core_db/legacy_db.nim
Co-authored-by: Kim De Mey <kim.demey@gmail.com>
* Update nimbus/db/aristo/aristo_transcode.nim
Co-authored-by: Kim De Mey <kim.demey@gmail.com>
* Update nimbus/db/core_db/legacy_db.nim
Co-authored-by: Kim De Mey <kim.demey@gmail.com>
---------
Co-authored-by: Kim De Mey <kim.demey@gmail.com>
* Kvt: Implemented multi-descriptor access on the same backend
why:
This behaviour mirrors the one of Aristo and can be used for
simultaneous transactions on Aristo + Kvt
* Kvt: Update database iterators
why:
Forgot to run on the top layer first
* Kvt: Misc fixes
* Aristo, use `openArray[byte]` rather than `Blob` in prototype
* Aristo, by default hashify right after cloning descriptor
why:
Typically, a completed descriptor is expected after cloning. Hashing
can be suppressed by argument flag.
* Aristo provides `replicate()` iterator, similar to legacy `replicate()`
* Aristo API fixes and updates
* CoreDB: Rename `legacy_persistent` => `legacy_rocksdb`
why:
More systematic, will be in line with Aristo DB which might have
more than one persistent backends
* CoreDB: Prettify API sources
why:
Better to read and maintain
details:
Annotating with custom pragmas which cleans up the prototypes
* CoreDB: Update MPT/put() prototype allowing `CatchableError`
why:
Will be needed for Aristo API (legacy is OK with `RlpError`)
* Nimbus folder environment update
details:
* Integrated `CoreDbRef` for the sources in the `nimbus` sub-folder.
* The `nimbus` program does not compile yet as it needs the updates
in the parallel `stateless` sub-folder.
* Stateless environment update
details:
* Integrated `CoreDbRef` for the sources in the `stateless` sub-folder.
* The `nimbus` program compiles now.
* Premix environment update
details:
* Integrated `CoreDbRef` for the sources in the `premix` sub-folder.
* Fluffy environment update
details:
* Integrated `CoreDbRef` for the sources in the `fluffy` sub-folder.
* Tools environment update
details:
* Integrated `CoreDbRef` for the sources in the `tools` sub-folder.
* Nodocker environment update
details:
* Integrated `CoreDbRef` for the sources in the
`hive_integration/nodocker` sub-folder.
* Tests environment update
details:
* Integrated `CoreDbRef` for the sources in the `tests` sub-folder.
* The unit tests compile and run cleanly now.
* Generalise `CoreDbRef` to any `select_backend` supported database
why:
Generalisation was just missed due to overcoming some compiler oddity
which was tied to rocksdb for testing.
* Suppress compiler warning for `newChainDB()`
why:
Warning was added to this function which must be wrapped so that
any `CatchableError` is re-raised as `Defect`.
* Split off persistent `CoreDbRef` constructor into separate file
why:
This allows to compile a memory only database version without linking
the backend library.
* Use memory `CoreDbRef` database by default
detail:
Persistent DB constructor needs to import `db/core_db/persistent
why:
Most tests use memory DB anyway. This avoids linking `-lrocksdb` or
any other backend by default.
* fix `toLegacyBackend()` availability check
why:
got garbled after memory/persistent split.
* Clarify raw access to MPT for snap sync handler
why:
Logically, `kvt` is not the raw access for the hexary trie (although
this holds for the legacy database)
why:
* Resolves some compiler coughing when it bails out on persitent
db constructor inside `test()` caluses (works perfectly outside.)
* API looks cleaner and better to maintain for the price of slightly
more work at the backend
* Remove 32bit os support from `custom_network` unit test
also:
* Fix compilation annoyance #1648
* Fix unit test on Kiln (changed `merge` logic?)
* Hide unused sources do not compile
why:
* Get them out of the way before major update
* Import and function prototype mismatch -- maybe some changes got out
of scope.
* Re-implemented `db_chain` as `core_db`
why:
Hiding `TrieDatabaseRef` and `HexaryTrie` by default allows to replace
the current db wrapper by some other one, e.g. Aristo
* Support compiler exception warnings for CoreDbRef base methods.
* Allow `pairs()` iterator on all memory based key-value tables
why:
Previously only available for capture recorder.
* Backport `chain_db.nim` changes into its re-implementation `core_apps.nim`
* Fix exception annotation