Commit Graph

50 Commits

Author SHA1 Message Date
Jacek Sieka 2fe8cc4551
leaf cache fixes (#2637)
* Add missing leaf cache update when a leaf turns to a branch with two
leaves (on merge) and vice versa (on delete) - this could lead to stale
leaves being returned from the cache causing validation failures - it
didn't happen because the leaf caches were not being used efficiently :)
* Replace `seq` with `ArrayBuf` in `Hike` allowing it to become
allocation-free - this PR also works around an inefficiency in nim in
returning large types via a `var` parameter
* Use the leaf cache instead of `getVtxRc` to fetch recent leaves - this
makes the vertex cache more efficient at caching branches because fewer
leaf requests pass through it.
2024-09-19 10:39:06 +02:00
Jacek Sieka d39c589ec3
lru cache updates (#2590)
* replace rocksdb row cache with larger rdb lru caches - these serve the
same purpose but are more efficient because they skips serialization,
locking and rocksdb layering
* don't append fresh items to cache - this has the effect of evicting
the existing items and replacing them with low-value entries that might
never be read - during write-heavy periods of processing, the
newly-added entries were evicted during the store loop
* allow tuning rdb lru size at runtime
* add (hidden) option to print lru stats at exit (replacing the
compile-time flag)

pre:
```
INF 2024-09-03 15:07:01.136+02:00 Imported blocks
blockNumber=20012001 blocks=12000 importedSlot=9216851 txs=1837042
mgas=181911.265 bps=11.675 tps=1870.397 mgps=176.819 avgBps=10.288
avgTps=1574.889 avgMGps=155.952 elapsed=19m26s458ms
```

post:
```
INF 2024-09-03 13:54:26.730+02:00 Imported blocks
blockNumber=20012001 blocks=12000 importedSlot=9216851 txs=1837042
mgas=181911.265 bps=11.637 tps=1864.384 mgps=176.250 avgBps=11.202
avgTps=1714.920 avgMGps=169.818 elapsed=17m51s211ms
```

9%:ish import perf improvement on similar mem usage :)
2024-09-05 11:18:32 +02:00
Jordan Hrycaj 5b502a06c4
Added portal proof nodes generation functionality (#2539)
* Extracted `test_tx.testTxMergeProofAndKvpList()` => separate file

* Fix serialiser

why:
  Typo lead to duplicate rlp-encoded nodes in chain

* Remove cruft

* Implemnt portal proof nodes generators `partXxxTwig()`

* Add unit test for portal proof nodes generator `partAccountTwig()`

* Cosmetics

* Simplify serialiser return code format

* Fix proof generator for extension nodes

why:
  Code was simply bonkers, not detected before the unit tests were
  adapted to check for just this.

* Implemented portal proof nodes verifier `partUntwig()`

* Cosmetics

* Fix `testutp` cli poblem
2024-08-06 11:29:26 +00:00
Jordan Hrycaj 72c3ab8ced
Provide partial tree support for preloading tests (#2536)
* Implement partial trees

why:
  This is currently needed for unit tests to pre-load the database
  with test data similar to `proof` node pre-load.

  The basic features for `snap-sync` boundary proofs are available
  as well for future use. What is missing is the final proof verification
  and a complete storage data load/merge function (stub is available.)

* Cosmetics, clean up
2024-07-29 20:15:17 +00:00
Jordan Hrycaj 6677f57ea9
Aristo balancer clean up (#2501)
* Remove `chunkedMpt` from `persistent()`/`stow()` function

why:
  Proof-mode code was removed with PR #2445 and needs to be re-designed.

* Remove unused `beStateRoot` argument from `deltaMerge()`

* Update/drastically simplify `txStow()`

why:
  Got rid of many boundary conditions

details:
  Many pre-conditions have changed. In particular, previous versions
  used the account state (hash) which was conveniently available and
  checked it against the backend in order to find out whether there
  was something to do, at all. Currently, only an empty set of all
  tables in the delta layer has the balancer update ignored.

  Notable changes are:
  * no check against account state (see above)
  * balancer filters have no hash signature (some legacy stuff left over
    from journals)
  * no (shap sync) proof data which made the generation of the a top layer
    more complex

* Cosmetics, cruft removal

* Update unit test file & function name

why:
  Was legacy module
2024-07-17 19:27:33 +00:00
Jacek Sieka 81e75622cf
storage: store root id together with vid, for better locality of refe… (#2449)
The state and account MPT:s currenty share key space in the database
based on that vertex id:s are assigned essentially randomly, which means
that when two adjacent slot values from the same contract are accessed,
they might reside at large distance from each other.

Here, we prefix each vertex id by its root causing them to be sorted
together thus bringing all data belonging to a particular contract
closer together - the same effect also happens for the main state MPT
whose nodes now end up clustered together more tightly.

In the future, the prefix given to the storage keys can also be used to
perform range operations such as reading all the storage at once and/or
deleting an account with a batch operation.

Notably, parts of the API already supported this rooting concept while
parts didn't - this PR makes the API consistent by always working with a
root+vid.
2024-07-04 15:46:52 +02:00
Jacek Sieka b23795ab39
remove pPrf, fRpp (#2445)
No longer used now that hashify is gone
2024-07-03 22:21:57 +02:00
Jordan Hrycaj 2c87fd1636
Aristo code cosmetics and tests update (#2434)
* Update some docu

* Resolve obsolete compile time option

why:
  Not optional anymore

* Update checks

why:
  The notion of what constitutes a valid `Aristo` db has changed due to
  (even more) lazy calculating Merkle hash keys.

* Disable redundant unit test for production
2024-07-01 10:59:18 +00:00
Jordan Hrycaj 8dd038144b
Some cleanups (#2428)
* Remove `dirty` set from structural objects

why:
  Not used anymore, the tree is dirty by default.

* Rename `aristo_hashify` -> `aristo_compute`

* Remove cruft, update comments, cosmetics, etc.

* Simplify `SavedState` object

why:
  The key chaining have become obsolete after extra lazy hashing. There
  is some available space for a state hash to be maintained in future.

details:
  Accept the legacy `SavedState` object serialisation format for a
  while (which will be overwritten by new format.)
2024-06-28 18:43:04 +00:00
Jordan Hrycaj 14c3772545
On demand mpt revisited (#2426)
* rebased from `github/on-demand-mpt`

ackn:
  wip: on-demand mpt construction

  Given that actual data is stored in the `Vertex` structure, it's useful
  to think of the MPT as a cache for computing roots rather than being a
  functional requirement on its own.

  This PR engenders this line of thinking by incrementally computing the
  MPT only when it's needed, ie when a state (or similar) root is needed.

  This has the effect of siginficantly reducing memory usage as well as
  improving performance:

  * no need for dirty-mpt-node book-keeping
  * no need to build complex forest of upcoming hashing work
  * only hashes that are functionally needed are ever computed -
  intermediate nodes whose MTP root is not observed are never computed /
  processed

* Unit test hot fixes

* Unit test hot fixes cont.

(somehow lost that part)

---------

Co-authored-by: Jacek Sieka <jacek@status.im>
2024-06-28 15:03:12 +00:00
Jacek Sieka 41cf81f80b
Fix dboptions init (#2391)
For the block cache to be shared between column families, the options
instance must be shared between the various column families being
created. This also ensures that there is only one source of truth for
configuration options instead of having two different sets depending on
how the tables were initialized.

This PR also removes the re-opening mechanism which can double startup
time - every time the database is opened, the log is replayed - a large
log file will take a long time to open.

Finally, several options got correclty implemented as column family
options, including an one that puts a hash index in the SST files.
2024-06-19 10:55:57 +02:00
Jordan Hrycaj 8727307ef4
Aristo uses pre classified tree types cont1 (#2389)
* Provide dedicated functions for deleteing accounts and storage trees

why:
  Storage trees are always linked to an account, so there is no need
  for an application to fiddle about (e.g. re-cycling, unlinking)
  storage tree vertex IDs.

* Remove `delete()` and other cruft from API, `aristo_delete`, etc.

* clean up delete functions

details:
  The delete implementations `deleteImpl()` and `delTreeImpl()` do not
  need to be super generic anymore as all the edge cases are covered by
  the specialised `deleteAccountPayload()`, `deleteGenericData()`, etc.

* Avoid unnecessary re-calculations of account keys

why:
  The function `registerAccountForUpdate()` did extract the storage ID
  (if any) and automatically marked the Merkle keys along the account
  path for re-hashing.

  This would also apply if there was later detected that the account
  or the storage tree did not need to be updated.

  So the `registerAccountForUpdate()` function was split into a part
  which retrieved the storage ID, and another one which marked the
  Merkle keys for re-calculation to be applied only when needed.
2024-06-18 19:30:01 +00:00
Jordan Hrycaj 51f02090b8
Aristo uses pre classified tree types (#2385)
* Remove unused `merge*()` functions (for production)

details:
  Some functionality moved to test suite

* Make sure that only `AccountData` leaf type is exactly used on VertexID(1)

* clean up payload type

* Provide dedicated functions for merging accounts and storage trees

why:
  Storage trees are always linked to an account, so there is no need
  for an application to fiddle about (e.e. creating, re-cycling) with
  storage tree vertex IDs.

* CoreDb: Disable tracer functionality

why:
  Must be updated to accommodate new/changed `Aristo` functions.

* CoreDb: Use new `mergeXXX()` functions

why:
  Makes explicit vertex ID management obsolete for creating new
  storage trees.

* Remove `mergePayload()` and other cruft from API, `aristo_merge`, etc.

* clean up merge functions

details:
  The merge implementation `mergePayloadImpl()` does not need to be super
  generic anymore as all the edge cases are covered by the specialised
  functions `mergeAccountPayload()`, `mergeGenericData()`, and
  `mergeStorageData()`.

* No tracer available at the moment, so disable offending tests
2024-06-18 11:14:02 +00:00
Jordan Hrycaj debba5a620
Coeredb related clean up and maint fixes (#2360)
* Fix initialiser

why:
  Possible crash (app profiling, tracer etc.)

* Update column family options processing

why:
  Same for kvt as for aristo

* Move `AristoDbDualRocks` backend type to the test suite

why:
  So it is not available for production

* Fix typos in API jump table

why:
  Used for tracing and app profiling only. Needed some update

* Purged CoreDb legacy API

why:
  Not needed anymore, was transitionary and disabled.

* Rename `flush` argument to `eradicate` in a DB close context

why:
  The word `eradicate` leaves no doubt what is meant

* Rename `stoFlush()` -> `stoDelete()`

* Rename `core_apps_newapi` -> `core_apps` (not so new anymore)
2024-06-14 11:19:48 +00:00
Jordan Hrycaj 392088e5e9
Coredb fix storage tree issues (#2317)
* Code cosmetics

* Re-org `aristo_merge`, internally split into sub-modules

why:
  Became a burden for maintenance because it hosts two different
  functionalities under the same merge paradigm: account/data merge
  and snap proof merge where the latter produces a partial trie.

* Fix CoreDb tracer

* Ledger: fix potential account vs. storage tree sync problems

* Remove bound on the size of removable whole storage trees

* Activate `test_tracer_json`
2024-06-07 10:56:31 +00:00
Jacek Sieka c876729c4d
Add some basic rocksdb options to command line (#2286)
These options are there mainly to drive experiments, and are therefore
hidden.

One thing that this PR brings in is an initial set of caches and buffers for rocksdb - the set that I've been using during various performance tests to get to a viable baseline performance level.
2024-06-05 17:08:29 +02:00
Jordan Hrycaj f926222fec
Aristo cull journal related stuff (#2288)
* Remove all journal related stuff

* Refactor function names journal*() => delta*(), filter*() => delta*()

* remove `trg` fileld from `FilterRef`

why:
  Same as `kMap[$1]`

* Re-type FilterRef.src as `HashKey`

why:
  So it is directly comparable to `kMap[$1]`

* Moved `vGen[]` field from `LayerFinalRef` to `LayerDeltaRef`

why:
  Then a separate `FilterRef` type is not needed, anymore

* Rename `roFilter` field in `AristoDbRef` => `balancer`

why:
  New name more appropriate.

* Replace `FilterRef` by `LayerDeltaRef` type

why:
  This allows to avoid copying into the `balancer` (see next patch set)
  most of the time. Typically, only one instance is running on the backend
  and the `balancer` is only used as a stage before saving data.

* Refactor way how to store data persistently

why:
  Avoid useless copy when staging `top` layer for persistently saving to
  backend.

* Fix copyright header?
2024-06-03 20:10:35 +00:00
Jordan Hrycaj 0f430c70fd
Aristo avoid storage trie update race conditions (#2251)
* Update TDD suite logger output format choices

why:
  New format is not practical for TDD as it just dumps data across a wide
  range (considerably larder than 80 columns.)

  So the new format can be turned on by function argument.

* Update unit tests samples configuration

why:
  Slightly changed the way to find the `era1` directory

* Remove compiler warnings (fix deprecated expressions and phrases)

* Update `Aristo` debugging tools

* Always update the `storageID` field of account leaf vertices

why:
  Storage tries are weekly linked to an account leaf object in that
  the `storageID` field is updated by the application.

  Previously, `Aristo` verified that leaf objects make sense when passed
  to the database. As a consequence
  * the database was inconsistent for a short while
  * the burden for correctness was all on the application which led
    to delayed error handling which is hard to debug.

  So `Aristo` will internally update the account leaf objects so that
  there are no race conditions due to the storage trie handling

* Aristo: Let `stow()`/`persist()` bail out unless there is a `VertexID(1)`

why:
  The journal and filter logic depends on the hash of the `VertexID(1)`
  which is commonly known as the state root. This implies that all
  changes to the database are somehow related to that.

* Make sure that a `Ledger` account does not overwrite the storage trie reference

why:
  Due to the abstraction of a sub-trie (now referred to as column with a
  hash describing its state) there was a weakness in the `Aristo` handler
  where an account leaf could be overwritten though changing the validity
  of the database. This has been changed and the database will now reject
  such changes.

  This patch fixes the behaviour on the application layer. In particular,
  the column handle returned by the `CoreDb` needs to be updated by
  the `Aristo` database state. This mitigates the problem that a storage
  trie might have vanished or re-apperaed with a different vertex ID.

* Fix sub-trie deletion test

why:
  Was originally hinged on `VertexID(1)` which cannot be wholesale
  deleted anymore after the last Aristo update. Also, running with
  `VertexID(2)` needs an artificial `VertexID(1)` for making `stow()`
  or `persist()` work.

* Cosmetics

* Activate `test_generalstate_json`

* Temporarily `deactivate test_tracer_json`

* Fix copyright header

---------

Co-authored-by: jordan <jordan@dry.pudding>
Co-authored-by: Jacek Sieka <jacek@status.im>
2024-05-30 17:48:38 +00:00
Jordan Hrycaj 961f63358e
Core db+aristo update recovery journal management (#2156)
* Aristo: Allow to define/set `FilterID` for journal filter records

why:
  After some changes, the `FilterID` is isomorphic to the `BlockNumber`
  scalar (well, the first 2^64 entries of a `BlockNumber`.)

  The needed change for `FilterID` is that the `FilterID(0)` value is
  valid part of the `FilterID` scalar. A non-valid `FilterID` entry is
  represented by `none(FilterID)`.

* Aristo: Split off function `persist()` as persistent version of `stow()`

why:
  In production, `stow(persistent=false,..)` is currently unused. So,
  using `persist()` rather than `stow(persistent=true,..)` improves
  readability and is better to maintain.

* CoreDb+Aristo: Store block numbers in journal records

why:
  This makes journal records searchable by block numbers

* Aristo: Rename some journal related functions

why:
  The name *journal* is more appropriate to api functions than something
   with *fifo* or *filter*.

* CoreDb+Aristo: Update last/oldest journal state retrieval

* CoreDb+Aristo: Register block number with state root in journal

why:
  No need anymore for extra lookup table `stRootToBlockNum` which maps
  a storage root -> block number.

* Aristo: Remove unused function `getFilUbe()` from api

* CoreDb: Remove now unused virtual table `stRootToBlockNum`

why:
  Was used to map a state root to a block number. This functionality
  is now embedded into the recovery journal backend.

* Turn of API tracking (will fail on `fluffy`)
2024-04-29 20:17:17 +00:00
Jordan Hrycaj 0d4ef023ed
Update aristo journal functionality (#2155)
* Aristo: Code cosmetics, e.g. update some CamelCase names

* CoreDb+Aristo: Provide oldest known state root implied

details:
  The Aristo journal allows to recover earlier but not all state roots.

* Aristo: Fix journal backward index operator, e.g. `[^1]`

* Aristo: Fix journal updater

why:
  The `fifosStore()` store function slightly misinterpreted the update
  instructions when translation is to database `put()` functions. The
  effect was that the journal was ever growing due to stale entries which
  were never deleted.

* CoreDb+Aristo: Provide utils for purging stale data from the KVT

details:
  See earlier patch, not all state roots are available. This patch
  provides a mapping from some state root to a block number and allows to
  remove all KVT data related to a particular block number

* Aristo+Kvt: Implement a clean up schedule for expired data in KVT

why:
  For a single state ledger like `Aristo`, there is only a limited
  backlog of states. So KVT data (i.e. headers etc.) are cleaned up
  regularly

* Fix copyright year
2024-04-26 13:43:52 +00:00
Jordan Hrycaj 7d9e1d8607
Misc updates for full sync (#2140)
* Code cosmetics

* Aristo+Kvt: Fix api wrappers

why:
  Api setup killed the backend descriptor when backend mapping was
  disabled.

* Aristo: Implement masked profiling entries

why:
  Database backend should be listed but not counted in tally

* CoreDb: Simplify backend() methods

why:
  DBMS backend access Was provided very early and over engineered. Now
  there are only two backend machines, one for `Kvt` and the other one
  for an `Mpt` available only via new API.

* CoreDb: Code cleanup regarding descriptor types

* CoreDb: Refactor/redefine `persistent()` methods

why:
  There were `persistent()` methods for any type of caching storage
  facilities `Kvt`, `Mpt`, `Phk`, and `Acc`. Now there is only a single
  `persistent()` method storing all facilities in tandem (similar to
  how transactions work.)

  For non shared `Kvt` tables, there is now an extra storage method
  `saveOffSite()`.

* CoreDb lingo update: `trie` becomes `column`

why:
  Notion of a `trie` is pretty much hidden by the new `CoreDb` api.
  Revealed are sort of database columns for accounts an storage data,
  any of which have an internal state represented by a Keccack hash.
  So a `trie` or `MPT` becomes a `column` and a `rootHash` becomes a
  column state.

* Aristo: rename backend filed `filters` => `journal`

* Update full sync logging

details:
  + Disable eth handler noise while syncing
  + Log journal depth (if available)

* Fix copyright year

* Fix cruft and unwanted imports
2024-04-19 18:37:27 +00:00
Jordan Hrycaj 1502014e36
Core db+aristo re org tracer (#2123)
* Kvt: Update API hooks

* Aristo: Generalised merging snap proofs, now for multiple state roots

why:
  This accommodates pre-loading partial tries for unit tests

* Aristo: Update some unit tests

* CoreDb+Aristo: Re-factor tracer

why:
  Was bonkers anyway. The main change is that the trace journal is now
  kept in a way similar to a transaction layer so that it can predictably
  interact with DB transactions.

* Ledger: Debugging helper

* Update tracer unit test applicable for `Aristo`

* Fix copyright year

* Disable `dump()` function as compile time default

why:
  This needs to pull in the `rocks_db` library at compile time.
2024-04-03 15:48:35 +00:00
andri lim c41206be39
Fix styles and reduce compiler warnings (#2086)
* Fix styles and reduce compiler warnings

* Fix copyright year
2024-03-20 14:35:38 +07:00
Jordan Hrycaj 5379302ce9
Aristo+Kvt: Let destructor crash when `nil` argument is given (#2080)
why:
  Ignoring `nil` objects was handy for a while but eventually led to
  lazy programming which in turn led to double destructor calls for
  the rocks-db.
2024-03-15 14:20:00 +00:00
Jordan Hrycaj 587ca3abbe
Coredb use stackable api for aristo backend (#2060)
* Aristo/Kvt: Provide function hooks APIs

why:
  These APIs can be used for installing tracers, profiling functoinality,
  and other niceties on the databases.

* Aristo: Provide optional API profiling

details:
  It basically is a re-implementation of the `CoreDb` profiling
  implementation

* Kvt: Provide optional API profiling similar to `Aristo`

* CoreDb: Re-implementing profiling using `aristo_profile`

* Ledger: Re-implementing profiling using `aristo_profile`

* CoreDb: Update unit tests for maintainability

* update copyright dates
2024-02-29 21:10:24 +00:00
Jordan Hrycaj 8e18e85288
Aristodb remove obsolete and time consuming admin features (#2048)
* Aristo: Reorg `hashify()` using different schedule algorithm

why:
  Directly calculating the search tree top down from the roots turns
  out to be faster than using the cached structures left over by `merge()`
  and `delete()`.
  Time gains is short of 20%

* Aristo: Remove `lTab[]` leaf entry object type

why:
  Not used anymore. It was previously needed to build the schedule for
  `hashify()`.

* Aristo: Avoid unnecessary re-org of the vertex ID recycling list

why:
  This list can become quite large so a heuristic is employed whether
  it makes sense to re-org.

  Also, re-org check is only done by `delete()` functions.

* Aristo: Remove key/reverse lookup table from tx layers

why:
  It is ignored except for handling proof nodes and costs unnecessary
  run time resources.

  This feature was originally needed to accommodate the mental transition
  from the legacy MPT to the `Aristo` trie :).

* Fix copyright year
2024-02-22 08:24:58 +00:00
andri lim 6ff2edc416
Fix styles (#2046)
* Fix styles

* Fix copyright year
2024-02-21 23:04:59 +07:00
andri lim bea558740f
Reduce compiler warnings (#2030)
* Reduce compiler warnings

* Reduce compiler warnings in test code
2024-02-16 16:08:07 +07:00
Jordan Hrycaj 1b4a43c140
Aristo db remove over engineered object type (#2027)
* CoreDb: update test suite

* Aristo: Simplify reverse key map

why:
  The reverse key map `pAmk: (root,key) -> {vid,..}` as been simplified to
  `pAmk: key -> {vid,..}` as the state `root` domain argument is not used,
  anymore

* Aristo: Remove `HashLabel` object type and replace it by `HashKey`

why:
  The `HashLabel` object attaches a root hash to a hash key. This is
  nowhere used, anymore.

* Fix copyright
2024-02-14 19:11:59 +00:00
Jordan Hrycaj 9e50af839f
Core db+aristo update storage trie handling (#2023)
* CoreDb: Test module with additional sample selector cmd line options

* Aristo: Do not automatically remove a storage trie with the account

why:
  This is an unnecessary side effect. Rather than using an automatism, a
  a storage root must be deleted manually.

* Aristo: Can handle stale storage root vertex IDs as empty IDs.

why:
  This is currently needed for the ledger API supporting both, a legacy
  and the `Aristo` database backend.

  This feature can be disabled at compile time by re-setting the
  `LOOSE_STORAGE_TRIE_COUPLING` flag in the `aristo_constants` module.

* CoreDb+Aristo: Flush/delete storage trie when deleting account

why:
  On either backend, a deleted account leave a dangling storage trie on
  the database.

  For consistency nn the legacy backend, storage tries must not be
  deleted as they might be shared by several accounts whereas on `Aristo`
  they are always unique.
2024-02-12 19:37:00 +00:00
Jordan Hrycaj 2c35390bdf
Core db and aristo maintenance update (#2014)
* Aristo: Update error return code

why:
  Failing of `Aristo` function `delete()` might fail because there is
  no such data item on the db. This must return a single error code
  as is done with `fetch()`.

* Ledger: Better error handling

why:
  The `expect()` clauses have been replaced by raising asserts indicating
  the error from the database backend.

   Also, `delete()` failures are legitimate if the item to delete does not
   exist.

* Aristo: Delete function must always leave a label on DB for `hashify()`

why:
  The `hashify()` uses the labels left bu `merge()` and `delete()` to
  compile (and optimise) a scheduler for subsequent hashing.

  Originally, the labels were not used for deleted entries and `delete()`
  still had some edge case where the deletion label was not properly
  handled.

* Aristo: Update `hashify()` scheduler, remove buggy optimisation

why:
  Was left over from version without virtual state roots which did not
  know about account payload leaf vertices referring to storage roots.

* Aristo: Label storage trie account in `delete()` similar to `merge()`

details;
  The `delete()` function applied to a non-static state root (assumed
  to be a storage root) will check the payload of an accounts leaf
  and mark its Merkle keys to be re-checked when runninh `hashify()`

* Aristo: Clean up and re-org recycled vertex IDs in `hashify()`

why:
  Re-organising the recycled vertex IDs list intends to reduce the size of the
  list.

  This list is organised as a LIFO (or stack.) By reorganising it in a way
  so that the least vertex ID numbers are on top, the list will be kept
  smaller as observed on some examples (less than 30%.)

* CoreDb: Accept storage trie deletion requests in non-initialised state

why:
  Due to lazy initialisation, the root vertex ID might not yet exist. So
  the `Aristo` database handlers would reject this call with an error and
  this condition needs to be handled by the API (which realises the lazy
  feature.)

* Cosmetics & code massage, prettify logging

* fix missing import
2024-02-08 16:32:16 +00:00
Jordan Hrycaj 3b306a9689
Aristo: Update unit test suite (#2002)
* Aristo: Update unit test suite

* Aristo/Kvt: Fix iterators

why:
  Generic iterators were not properly updated after backend change

* Aristo: Add sub-trie deletion functionality

why:
  For storage tries linked to an account payload vertex ID, a the
  whole storage trie needs to be deleted with the account.

* Aristo: Reserve vertex ID numbers for static custom state roots

why:
  Static custom state roots may be controlled by an application,
  e.g. for a receipt or a transaction root. The `Aristo` functions
  are agnostic of what the static state roots are when different
  from the internal tree vertex ID 1.

details;
  The `merge()` function applied to a non-static state root (assumed
  to be a storage root) will check the payload of an accounts leaf
  and mark its Merkle keys to be re-checked.

* Aristo: Correct error code symbol

* Aristo: Update error code symbols

* Aristo: Code cosmetics/comments

* Aristo: Fix hashify schedule calculator

why:
  Had a tendency to stop early leaving an incomplete job
2024-02-01 21:27:48 +00:00
Jordan Hrycaj ffa8ad2246
Core db use differential tx layers for aristo and kvt (#1949)
* Fix kvt headers

* Provide differential layers for KVT transaction stack

why:
  Significant performance improvement

* Provide abstraction layer for database top cache layer

why:
  This will eventually implemented as a differential database layers
  or transaction layers. The latter is needed to improve performance.

behavioural changes:
  Zero vertex and keys (i.e. delete requests) are not optimised out
  until the last layer is written to the database.

* Provide differential layers for Aristo transaction stack

why:
  Significant performance improvement
2023-12-19 12:39:23 +00:00
Jordan Hrycaj 13f51939f6
Core db aristo hasher profiling and timing improvement (#1938)
* Explicitly use shared `Kvt` table on `Ledger` and `Clique` lookup.

why:
  Speeds up lookup time with `Aristo` backend. For writing `Clique` data,
  the `Companion` model allows to write `Clique` data past the database
  locked by evm transactions.

* Implement `CoreDb` profiling with API tracking

why:
  Chasing time spent per APT procs ...

* Implement `Ledger` profiling with API tracking

why:
  Chasing time spent per APT procs ...

* Always hashify when commiting or storing

why:
  A dirty cache makes no sense when committing

* Make sure that a zero key is created when adding/updating vertices

why:
  This is an error fix mainly for edge cases. A typical error was
  that the root key got deleted when there were only a few vertices
  left on the DB.

* Need all created and changed vertices zero-keyed on the cache

why:
  A zero key (i.e. empty Merkle hash) indicates that a vertex key
  needs to be updated. This would not be needed immediately after
  a merge as there is an actual leaf path on the cache layer. But
  after subsequent merge and delete operations this information
  might get blurred.

* Re-org hashing algorithm

why:
  Apart from errors, the previous implementation was too slow for
  two reasons:
  + some control hashes were calculated for debugging (now all
    verification is done in `aristo_check` module)
  + the leaf paths stored on the cache are used to build the
    labelling (aka hashing) schedule; there paths were accumulated
    over successive hash sessions although it is clear that all
    keys were generated, already
2023-12-12 17:47:41 +00:00
Jordan Hrycaj 657379f484
Aristo db update merkle hasher (#1925)
* Register paths for added leafs because of trie re-balancing

why:
  While the payload would not change, the prefix in the leaf vertex
  would. So it needs to be flagged for hash recompilation for the
  `hashify()` module.

also:
  Make sure that `Hike` paths which might have vertex links into the
  backend filter are replaced by vertex copies before manipulating.
  Otherwise the vertices on the immutable filter might be involuntarily
  changed.

* Also check for paths where the leaf vertex is on the backend, already

why:
  A a path can have dome vertices on the top layer cache with the
  `Leaf` vertex on  the backend.

* Re-define a void `HashLabel` type.

why:
  A `HashLabel` type is a pair `(root-vertex-ID, Keccak-hash)`. Previously,
  a valid `HashLabel` consisted of a non-empty hash and a non-zero vertex
  ID. This definition leads to a non-unique representation of a void
  `HashLabel` with either root-ID or has void. This has been changed to
  the unique void `HashLabel` exactly if the hash entry is void.

* Update consistency checkers

* Re-org `hashify()` procedure

why:
  Syncing against block chain showed serious deficiencies which produced
  wrong hashes or simply bailed out with error.

  So all fringe cases (mainly due to deleted entries) could be integrated
  into the labelling schedule rather than handling separate fringe cases.
2023-12-04 20:39:26 +00:00
Jordan Hrycaj c47f021596
Core db and aristo updates for destructor and tx logic (#1894)
* Disable `TransactionID` related functions from `state_db.nim`

why:
  Functions `getCommittedStorage()` and `updateOriginalRoot()` from
  the `state_db` module are nowhere used. The emulation of a legacy
  `TransactionID` type functionality is administratively expensive to
  provide by `Aristo` (the legacy DB version is only partially
  implemented, anyway).

  As there is no other place where `TransactionID`s are used, they will
  not be provided by the `Aristo` variant of the `CoreDb`. For the
  legacy DB API, nothing will change.

* Fix copyright headers in source code

* Get rid of compiler warning

* Update Aristo code, remove unused `merge()` variant, export `hashify()`

why:
  Adapt to upcoming `CoreDb` wrapper

* Remove synced tx feature from `Aristo`

why:
+ This feature allowed to synchronise transaction methods like begin,
  commit, and rollback for a group of descriptors.
+ The feature is over engineered and not needed for `CoreDb`, neither
  is it complete (some convergence features missing.)

* Add debugging helpers to `Kvt`

also:
  Update database iterator, add count variable yield argument similar
  to `Aristo`.

* Provide optional destructors for `CoreDb` API

why;
  For the upcoming Aristo wrapper, this allows to control when certain
  smart destruction and update can take place. The auto destructor works
  fine in general when the storage/cache strategy is known and acceptable
  when creating descriptors.

* Add update option for `CoreDb` API function `hash()`

why;
  The hash function is typically used to get the state root of the MPT.
  Due to lazy hashing, this might be not available on the `Aristo` DB.
  So the `update` function asks for re-hashing the gurrent state changes
  if needed.

* Update API tracking log mode: `info` => `debug

* Use shared `Kvt` descriptor in new Ledger API

why:
  No need to create a new descriptor all the time
2023-11-16 19:35:03 +00:00
Jordan Hrycaj 4feaa2cfab
Aristo db update for short nodes key edge cases (#1887)
* Aristo: Provide key-value list signature calculator

detail:
  Simple wrappers around `Aristo` core functionality

* Update new API for `CoreDb`

details:
+ Renamed new API functions `contains()` => `hasKey()` or `hasPath()`
  which disables the `in` operator on non-boolean 	`contains()` functions
+ The functions `get()` and `fetch()` always return a not-found error if
  there is no item, available. The new functions `getOrEmpty()` and
  `mergeOrEmpty()` return an an empty `Blob` if there is no such key
  found.

* Rewrite `core_apps.nim` using new API from `CoreDb`

* Use `Aristo` functionality for calculating Merkle signatures

details:
  For debugging, the `VerifyAristoForMerkleRootCalc` can be set so
  that `Aristo` results will be verified against the legacy versions.

* Provide general interface for Merkle signing key-value tables

details:
  Export `Aristo` wrappers

* Activate `CoreDb` tests

why:
  Now, API seems to be stable enough for general tests.

* Update `toHex()` usage

why:
  Byteutils' `toHex()` is superior to `toSeq.mapIt(it.toHex(2)).join`

* Split `aristo_transcode` => `aristo_serialise` + `aristo_blobify`

why:
+ Different modules for different purposes
+ `aristo_serialise`: RLP encoding/decoding
+ `aristo_blobify`: Aristo database encoding/decoding

* Compacted representation of small nodes' links instead of Keccak hashes

why:
  Ethereum MPTs use Keccak hashes as node links if the size of an RLP
  encoded node is at least 32 bytes. Otherwise, the RLP encoded node
  value is used as a pseudo node link (rather than a hash.) Such a node
  is nor stored on key-value database. Rather the RLP encoded node value
  is stored instead of a lode link in a parent node instead. Only for
  the root hash, the top level node is always referred to by the hash.

  This feature needed an abstraction of the `HashKey` object which is now
  either a hash or a blob of length at most 31 bytes. This leaves two
  ways of representing an empty/void `HashKey` type, either as an empty
  blob of zero length, or the hash of an empty blob.

* Update `CoreDb` interface (mainly reducing logger noise)

* Fix copyright years (to make `Lint` happy)
2023-11-08 12:18:32 +00:00
Jordan Hrycaj 3fe0a49a5e
Aristo db allow shorter than 64 nibbles path keys (#1864)
* Aristo: Single `FetchPathNotFound` error in `fetchXxx()` and `hasPath()`

why:
  Missing path hike returns too many detailed reasons why it failed
  which becomes cumbersome to handle.

also:
  Renamed `contains()` => `hasPath()` which disables the `in` operator on
  non-boolean 	`contains()` functions

* Kvt: Renamed `contains()` => `hasKey()`

why:
  which disables the `in` operator on non-boolean 	`contains()` functions

* Aristo: Generalising `HashID` by variable length `PathID`

why:
  There are cases when the `Aristo` database is to be used with
  shorter than 64 nibbles keys when handling transactions indexes
  with sequence IDs.

caveat:
  This patch only works reliable for full length `PathID` values. Tests
  for shorter `PathID` values are currently missing.
2023-10-27 22:36:51 +01:00
Jordan Hrycaj 786263c0b8
Core db update api and fix tracer methods (#1816)
* CoreDB: Re-org API

details:
  Legacy API internally uses vertex ID for root node abstraction

* Cosmetics: Move some unit test helpers to common sub-directory

* Extract constant from `accouns_cache.nim` => `constants.nim`

* Fix tracer methods

why:
  Logger dump data were wrongly dumped from the production database. This
  caused an assert exception when iterating over the persistent database
  (instead of the memory logger.) This event in turn was enabled after
  fixing another inconsistency which just set up an empty iterator. Unit
  tests failed to detect that.
2023-10-11 20:09:11 +01:00
Jordan Hrycaj cd1d370543
Aristo db api extensions for use as core db backend (#1754)
* Update docu

* Update Aristo/Kvt constructor prototype

why:
  Previous version used an `enum` value to indicate what backend is to
  be used. This was replaced by using the backend object type.

* Rewrite `hikeUp()` return code into `Result[Hike,(Hike,AristoError)]`

why:
  Better code maintenance. Previously, the `Hike` object was returned. It
  had an internal error field so partial success was also available on
  a failure. This error field has been removed.

* Use `openArray[byte]` rather than `Blob` in functions prototypes

* Provide synchronised multi instance transactions

why:
  The `CoreDB` object was geared towards the legacy DB which used a single
  transaction for the key-value backend DB. Different state roots are
  provided by the backend database, so all instances work directly on the
  same backend.

  Aristo db instances have different in-memory mappings (aka different
  state roots) and the transactions are on top of there mappings. So each
  instance might run different transactions.

  Multi instance transactions are a compromise to converge towards the
  legacy behaviour. The synchronised transactions span over all instances
  available at the time when base transaction was opened. Instances
  created later are unaffected.

* Provide key-value pair database iterator

why:
  Needed in `CoreDB` for `replicate()` emulation

also:
  Some update of internal code

* Extend API (i.e. prototype variants)

why:
  Needed for `CoreDB` geared towards the legacy backend which has a more
  basic API than Aristo.
2023-09-15 16:23:53 +01:00
andri lim 56215ed83f
Bump stint to v2.0: new array backend (#1747)
* Bump stint to v2.0: new array backend
2023-09-13 09:32:38 +07:00
Jordan Hrycaj 8e00143313
Aristo db code massage n cosmetics (#1745)
* Rewrite remaining `AristoError` return code into `Result[void,AristoError]`

why:
  Better code maintenance

* Update import sections

* Update Aristo DB paths

why:
 More systematic so directory can be shared with other DB types

* More cosmetcs

* Update unit tests runners

why:
  Proper handling of persistent and mem-only DB. The latter can be
  consistently triggered by an empty DB path.
2023-09-12 19:45:12 +01:00
Jordan Hrycaj 8e46953390
Aristo db state root repos and reorg (#1744)
* Reorg of distributed backend access

details:
  Now handled via API provided in `aristo_desc`.

* Rename `checkCache()` => `checkTop()`

why:
  Better naming for top layer cache checker

also:
  Provide cascaded fifos checker

* Provide `eq` directive for finding filter by exact filter ID (think block number)

* Some code beautification (for better code reading)

* State root reposition and reorg

details:
  Repositioning is supported by forking a new descriptor. Reorg is then
  accomplished by writing this forked state on the backend database.
2023-09-11 21:38:49 +01:00
Jordan Hrycaj 3936d4d0ad
Aristo db fixes n updates needed for filter fifo (#1728)
* Set scheduler state as part of the backend descriptor

details:
  Moved type definitions `QidLayoutRef` and `QidSchedRef` to
 `desc_structural.nim` so that it shares the same folder as
  `desc_backend.nim`

* Automatic filter queue table initialisation in backend

details:
  Scheduler can be tweaked or completely disabled

* Updated backend unit tests

details:
+ some code clean up/beautification, reads better now
+ disabled persistent filters so that there is no automated filter
   management which will be implemented next

* Prettify/update unit tests source code

details:
  Mostly replacing the `check()` paradigm by `xCheck()`

* Somewhat simplified backend type management

why:
  Backend objects are labelled with a `BackendType` symbol where the
  `BackendVoid` label is implicitly assumed for a `nil` backend object
  reference.

  To make it easier, a `kind()` function is used now applicable to
  `nil` references as well.

* Fix DB storage layout for filter objects

why:
  Need to store the filter ID with the object

* Implement reverse [] index on fifo

why:
  An integer index argument on `[]` retrieves the QueueID (label) of the
  fifo item while a QueueID argument on `[]` retrieves the index (so
  it is inverse to the former variant).

* Provide iterator over filters as fifo

why:
  This iterator goes along the cascased fifo structure (i.e. in
  historical order)
2023-09-05 14:57:20 +01:00
Jordan Hrycaj 3078c207ca
Aristo db implement distributed backend access (#1688)
* Fix hashing algorithm

why:
  Particular case where a sub-tree is on the backend, linked by an
  Extension vertex to the top level.

* Update backend verification to report `dirty` top layer

* Implement distributed merge of backend filters

* Implement distributed backend access management

details:
  Implemented and tested as described in chapter 5 of the `README.md`
  file.
2023-08-17 14:42:01 +01:00
Jordan Hrycaj 01fe172738
Aristo db integrate hashify into tx (#1679)
* Renamed type `NoneBackendRef` => `VoidBackendRef`

* Clarify names: `BE=filter+backend` and `UBE=backend (unfiltered)`

why:
  Most functions used full names as `getVtxUnfilteredBackend()` or
  `getKeyBackend()`. After defining abbreviations (and its meaning) it
   seems easier to use `getVtxUBE()` and `getKeyBE()`.

* Integrate `hashify()` process into transaction logic

why:
  Is now transparent unless explicitly controlled.

details:
  Cache changes imply setting a `dirty` flag which in turn triggers
  `hashify()` processing in transaction and `pack()` directives.

* Removed `aristo_tx.exec()` directive

why:
  Inconsistent implementation, functionality will be provided with a
  different paradigm.
2023-08-11 18:23:57 +01:00
Jordan Hrycaj 09fabd04eb
Aristo db use filter betw backend and tx cache (#1678)
* Provide deep copy for each transaction layer

why:
  Localising changes. Selective deep copy was just overlooked.

* Generalise vertex ID generator state reorg function `vidReorg()`

why:
  makes it somewhat easier to handle when saving layers.

* Provide dummy back end descriptor `NoneBackendRef`

* Optional read-only filter between backend and transaction cache

why:
  Some staging area for accumulating changes to the backend DB. This
  will eventually be an access layer for emulating a backend with
  multiple/historic state roots.

* Re-factor `persistent()` with filter between backend/tx-cache => `stow()`

why:
  The filter provides an abstraction from the physically stored data on
  disk. So, there can be several MPT instances using the same disk data
  with different state roots. Of course, all the MPT instances should
  not differ too much for practical reasons :).

TODO:
  Filter administration tools need to be provided.
2023-08-10 21:01:28 +01:00
Jordan Hrycaj 71c91e2280
Aristo db refactor tx paradim (#1674)
* Better error handling

why:
  Bail out on some error as early as possible before any changes.

* Implement `fetch()` as opposite of `merge()`

rationale:
  In the `Aristo` realm, the action named `fetch()` and `merge()` indicate
  leaf value related actions on the MPT, while actions `get()` and `put()`
   handle vertex or hash key related operations that constitute the MPT.

* Re-factor `merge()` prototypes

why:
  The most used variant of `merge()` should have the simplest prototype.

* Persistent DB constructor needs to import `aristo/aristo_init/persistent`

why:
  Most applications use memory DB anyway. This avoids linking `-lrocksdb`
  or any other back end libraries by default.

* Re-factor transaction module

why:
  Got the paradigm wrong. The transaction descriptor did replace the
  database one but should be handled separately.
2023-08-07 18:45:23 +01:00
Jordan Hrycaj 56d5c382d7
Aristo db traversal helpers (#1638)
* Misc fixes

detail:
* Fix de-serialisation for account leafs
* Update node recovery from unit tests

* Remove `LegacyAccount` from `PayloadRef` object

why:
  Legacy accounts use a hash key as storage root which is detrimental
  to the working of the Aristo database which uses a vertex ID.

* Dissolve `hashify_helper` into `aristo_utils` and `aristo_transcode`

why:
  Functions are of general interest so they should live in first level
  code files.

* Added left/right iterators over leaf nodes

* Some helper/wrapper functions that might be useful
2023-07-13 00:03:14 +01:00
Jordan Hrycaj ccf639fc3c
Aristo db transaction based interface (#1628)
* Provide transaction based interface for standard operations

* Provide unit tests for new Aristo interface using transactions

details:
  These new tests combine and replace several single-purpose tests.
  The now unused test sources will be kept for a while to be eventually
  removed.
2023-07-05 14:50:11 +01:00