Commit Graph

103 Commits

Author SHA1 Message Date
Jacek Sieka 188d689d9d
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.

Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.

Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.

This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.

Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.

When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.

* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased

All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).

With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.

Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 11:08:37 +00:00
tersec d53989cc2c
fix some XDeclaredButNotUsed hints (#2784) 2024-10-26 05:10:06 +00:00
andri lim 1126c7700d
Bump nim-eth and nimbus-eth2 (#2741)
* Bump nim-eth and nimbus-eth2

* Fix ambiguous identifier
2024-10-16 13:51:38 +07:00
Jacek Sieka 11646ad3c4
Ordered trie (#2712)
Speed up trie computations and remove redundant ways of performing this
operation.

Co-authored-by: jangko <jangko128@gmail.com>
2024-10-09 09:44:15 +02:00
Jordan Hrycaj 5b6ccddaa0
Db folder sources and related remove compiler warnings (#2673)
* Aristo: Rename `Hash256` -> `Hash32`

* CoreDb: Rename `Hash256` -> `Hash32`

* Ledger: Rename `Hash256` -> `Hash32`

* StorageTypes: Rename `Hash256` -> `Hash32`

* Aristo: Rename `Blob` -> `seq[byte]`, `keccakHash` -> `keccak256`

* Kvt: Rename `Blob` -> `seq[byte]`

* CoreDb: Rename `Blob` -> `seq[byte]`, `keccakHash` -> `keccak256`

* Ledger: Rename `Blob` -> `seq[byte]`, `keccakHash` -> `keccak256`

* CoreDb: Rename `BlockHeader` -> `Header`, `BlockNonce` -> `Bytes8`

* Misc: Rename `StorageKey` -> `Bytes32`

* Tracer: `Hash256` -> `Hash32`, `BlockHeader` -> `Header`, etc.

* Fix copyright header
2024-10-01 21:03:10 +00:00
Jordan Hrycaj c022b29d14
Clean up modules in sync folder (#2670)
* Dissolve legacy `sync/types.nim` into `*/eth/eth_types.nim`

* Flare sync: Simplify scheduler and remove `runSingle()` method

why:
  `runSingle()` is not used anymore (main purpose was for negotiating
  best headers in legacy full sync.)

  Also, `runMulti()` was renamed `runPeer()`

* Flare sync: Move `chain` field from `sync_desc` -> `worker_desc`

* Flare sync: Remove handler descriptor lateral reference

why:
  Not used anymore. It enabled to turn on/off eth handler activity with
  regards to the sync state, i.e.from with in the sync worker.

* Flare sync: Update `Hash256` and other deprecated `std/eth` symbols

* Protocols: Update `Hash256` and other deprecated `std/eth` symbols

* Eth handler: Update `Hash256` and other deprecated `std/eth` symbols

* Update flare TODO

* Remove redundant `sync/type` import

why:
  The import module `type` has been removed

* Remove duplicate implementation
2024-10-01 09:19:29 +00:00
Jacek Sieka f3e3c6bbe0
init style for Hash256 (#2661)
* init style for Hash256

https://github.com/status-im/nim-eth/pull/733 updates `Hash256` to
become an array instead of an object - unfortunately, nim does not allow
constructing arrays with `name()`, so this PR changes it to `default`
which works with both.

* lint
2024-09-26 13:24:36 +02:00
Jacek Sieka 2fe8cc4551
leaf cache fixes (#2637)
* Add missing leaf cache update when a leaf turns to a branch with two
leaves (on merge) and vice versa (on delete) - this could lead to stale
leaves being returned from the cache causing validation failures - it
didn't happen because the leaf caches were not being used efficiently :)
* Replace `seq` with `ArrayBuf` in `Hike` allowing it to become
allocation-free - this PR also works around an inefficiency in nim in
returning large types via a `var` parameter
* Use the leaf cache instead of `getVtxRc` to fetch recent leaves - this
makes the vertex cache more efficient at caching branches because fewer
leaf requests pass through it.
2024-09-19 10:39:06 +02:00
Jacek Sieka adb8d64377
simplify VertexRef (#2626)
* move pfx out of variant which avoids pointless field type panic checks
and copies on access
* make `VertexRef` a non-inheritable object which reduces its memory
footprint and simplifies its use - it's also unclear from a semantic
point of view why inheritance makes sense for storing keys
2024-09-13 18:55:17 +02:00
Jordan Hrycaj 75808bc03b
Add portal proof functionality for non-existing keys/paths (#2610) 2024-09-11 09:39:45 +00:00
tersec 1b173d420d
small cleanups (#2598)
* small cleanups

* stop hiding ConvFromXtoItselfNotNeeded hints

* lowmem optimization flag is no-op
2024-09-10 05:24:45 +00:00
Jacek Sieka d39c589ec3
lru cache updates (#2590)
* replace rocksdb row cache with larger rdb lru caches - these serve the
same purpose but are more efficient because they skips serialization,
locking and rocksdb layering
* don't append fresh items to cache - this has the effect of evicting
the existing items and replacing them with low-value entries that might
never be read - during write-heavy periods of processing, the
newly-added entries were evicted during the store loop
* allow tuning rdb lru size at runtime
* add (hidden) option to print lru stats at exit (replacing the
compile-time flag)

pre:
```
INF 2024-09-03 15:07:01.136+02:00 Imported blocks
blockNumber=20012001 blocks=12000 importedSlot=9216851 txs=1837042
mgas=181911.265 bps=11.675 tps=1870.397 mgps=176.819 avgBps=10.288
avgTps=1574.889 avgMGps=155.952 elapsed=19m26s458ms
```

post:
```
INF 2024-09-03 13:54:26.730+02:00 Imported blocks
blockNumber=20012001 blocks=12000 importedSlot=9216851 txs=1837042
mgas=181911.265 bps=11.637 tps=1864.384 mgps=176.250 avgBps=11.202
avgTps=1714.920 avgMGps=169.818 elapsed=17m51s211ms
```

9%:ish import perf improvement on similar mem usage :)
2024-09-05 11:18:32 +02:00
Jacek Sieka ef1bab0802
avoid some trivial memory allocations (#2587)
* pre-allocate `blobify` data and remove redundant error handling
(cannot fail on correct data)
* use threadvar for temporary storage when decoding rdb, avoiding
closure env
* speed up database walkers by avoiding many temporaries

~5% perf improvement on block import, 100x on database iteration (useful
for building analysis tooling)
2024-09-02 16:03:10 +02:00
Jordan Hrycaj 4dbc1653ea
Cleanup (#2565)
* Move snap un-dumpers to aristo unit test folder

why:
  The only place where it is used, now to test the database against
  legacy snap sync dump samples.

   While the details of the dumped data have mostly outlived their purpuse,
   its use as **entropy** data thrown against `Aristo` has still been
   useful to find/debug tricky DB problems.

* Remove cruft

* `nimbus-eth1-blobs` not used anymore as test data source
2024-08-15 12:31:07 +00:00
Jordan Hrycaj 38572bd8ea
Cache a storage root ID forever in the leaf payload of an account (#2551)
details:
  Stale root IDs are marked disabled while the ID is kept in the leaf
  payload.

why:
  This might lead to further caching advantages.
2024-08-07 13:28:01 +00:00
Jordan Hrycaj 488bdbc267
Provide portal proof functionality with coredb (#2550)
* Provide portal proof functions in `aristo_api`

why:
  So it can be fully supported by `CoreDb`

* Fix prototype in `kvt_api`

* Fix node constructor for account leafs with storage trees

* Provide simple path check based on portal proof functionality

* Provide portal proof functionality in `CoreDb`

* Update TODO list
2024-08-07 11:30:55 +00:00
Jordan Hrycaj 5b502a06c4
Added portal proof nodes generation functionality (#2539)
* Extracted `test_tx.testTxMergeProofAndKvpList()` => separate file

* Fix serialiser

why:
  Typo lead to duplicate rlp-encoded nodes in chain

* Remove cruft

* Implemnt portal proof nodes generators `partXxxTwig()`

* Add unit test for portal proof nodes generator `partAccountTwig()`

* Cosmetics

* Simplify serialiser return code format

* Fix proof generator for extension nodes

why:
  Code was simply bonkers, not detected before the unit tests were
  adapted to check for just this.

* Implemented portal proof nodes verifier `partUntwig()`

* Cosmetics

* Fix `testutp` cli poblem
2024-08-06 11:29:26 +00:00
Jordan Hrycaj 72c3ab8ced
Provide partial tree support for preloading tests (#2536)
* Implement partial trees

why:
  This is currently needed for unit tests to pre-load the database
  with test data similar to `proof` node pre-load.

  The basic features for `snap-sync` boundary proofs are available
  as well for future use. What is missing is the final proof verification
  and a complete storage data load/merge function (stub is available.)

* Cosmetics, clean up
2024-07-29 20:15:17 +00:00
Jordan Hrycaj 5ac362fe6f
Aristo and kvt balancer management update (#2504)
* Aristo: Merge `delta_siblings` module into `deltaPersistent()`

* Aristo: Add `isEmpty()` for canonical checking whether a layer is empty

* Aristo: Merge `LayerDeltaRef` into `LayerObj`

why:
  No need to maintain nested object refs anymore. Previously the
 `LayerDeltaRef` object had a companion `LayerFinalRef` which held
  non-delta layer information.

* Kvt: Merge `LayerDeltaRef` into `LayerRef`

why:
  No need to maintain nested object refs (as with `Aristo`)

* Kvt: Re-write balancer logic similar to `Aristo`

why:
  Although `Kvt` was a cheap copy of `Aristo` it sort of got out of
  sync and the balancer code was wrong.

* Update iterator over forked peers

why:
  Yield additional field `isLast` indicating that the last iteration
  cycle was approached.

* Optimise balancer calculation.

why:
  One can often avoid providing a new object containing the merge of two
  layers for the balancer. This avoids copying tables. In some cases this
  is replaced by `hasKey()` look ups though. One uses one of the two
  to combine and merges the other into the first.

  Of course, this needs some checks for making sure that none of the
  components to merge is eventually shared with something else.

* Fix copyright year
2024-07-18 21:32:32 +00:00
Jordan Hrycaj 6677f57ea9
Aristo balancer clean up (#2501)
* Remove `chunkedMpt` from `persistent()`/`stow()` function

why:
  Proof-mode code was removed with PR #2445 and needs to be re-designed.

* Remove unused `beStateRoot` argument from `deltaMerge()`

* Update/drastically simplify `txStow()`

why:
  Got rid of many boundary conditions

details:
  Many pre-conditions have changed. In particular, previous versions
  used the account state (hash) which was conveniently available and
  checked it against the backend in order to find out whether there
  was something to do, at all. Currently, only an empty set of all
  tables in the delta layer has the balancer update ignored.

  Notable changes are:
  * no check against account state (see above)
  * balancer filters have no hash signature (some legacy stuff left over
    from journals)
  * no (shap sync) proof data which made the generation of the a top layer
    more complex

* Cosmetics, cruft removal

* Update unit test file & function name

why:
  Was legacy module
2024-07-17 19:27:33 +00:00
Jordan Hrycaj a84a2131cd
No ext update (#2494)
* Imported/rebase from `no-ext`, PR #2485

  Store extension nodes together with the branch

  Extension nodes must be followed by a branch - as such, it makes sense
  to store the two together both in the database and in memory:

  * fewer reads, writes and updates to traverse the tree
  * simpler logic for maintaining the node structure
  * less space used, both memory and storage, because there are fewer
    nodes overall

  There is also a downside: hashes can no longer be cached for an
  extension - instead, only the extension+branch hash can be cached - this
  seems like a fine tradeoff since computing it should be fast.

  TODO: fix commented code

* Fix merge functions and `toNode()`

* Update `merkleSignCommit()` prototype

why:
  Result is always a 32bit hash

* Update short Merkle hash key generation

details:
  Ethereum reference MPTs use Keccak hashes as node links if the size of
  an RLP encoded node is at least 32 bytes. Otherwise, the RLP encoded
  node value is used as a pseudo node link (rather than a hash.) This is
  specified in the yellow paper, appendix D.

  Different to the `Aristo` implementation, the reference MPT would not
  store such a node on the key-value database. Rather the RLP encoded node value is stored instead of a node link in a parent node
  is stored as a node link on the parent database.

  Only for the root hash, the top level node is always referred to by the
  hash.

* Fix/update `Extension` sections

why:
  Were commented out after removal of a dedicated `Extension` type which
  left the system disfunctional.

* Clean up unused error codes

* Update unit tests

* Update docu

---------

Co-authored-by: Jacek Sieka <jacek@status.im>
2024-07-16 19:47:59 +00:00
Jacek Sieka f3a56002ca
Turn payload into value type (#2483)
The Vertex type unifies branches, extensions and leaves into a single
memory area where the larges member is the branch (128 bytes + overhead) -
the payloads we have are all smaller than 128 thus wrapping them in an
extra layer of `ref` is wasteful from a memory usage perspective.

Further, the ref:s must be visited during the M&S phase of garbage
collection - since we keep millions of these, many of them
short-lived, this takes up significant CPU time.

```
Function	CPU Time: Total	CPU Time: Self	Module	Function (Full)	Source File	Start Address
system::markStackAndRegisters	10.0%	4.922s	nimbus	system::markStackAndRegisters(var<system::GcHeap>).constprop.0	gc.nim	0x701230`
```
2024-07-14 12:02:05 +02:00
Jacek Sieka 81e75622cf
storage: store root id together with vid, for better locality of refe… (#2449)
The state and account MPT:s currenty share key space in the database
based on that vertex id:s are assigned essentially randomly, which means
that when two adjacent slot values from the same contract are accessed,
they might reside at large distance from each other.

Here, we prefix each vertex id by its root causing them to be sorted
together thus bringing all data belonging to a particular contract
closer together - the same effect also happens for the main state MPT
whose nodes now end up clustered together more tightly.

In the future, the prefix given to the storage keys can also be used to
perform range operations such as reading all the storage at once and/or
deleting an account with a batch operation.

Notably, parts of the API already supported this rooting concept while
parts didn't - this PR makes the API consistent by always working with a
root+vid.
2024-07-04 15:46:52 +02:00
Jacek Sieka b23795ab39
remove pPrf, fRpp (#2445)
No longer used now that hashify is gone
2024-07-03 22:21:57 +02:00
Jacek Sieka 1f60e8e453
Use `Hash256` directly for account path (#2439)
Account paths are always a hash - passing it around as such helps avoid
confusion as to how long it is
2024-07-03 10:14:26 +02:00
Jordan Hrycaj 2c87fd1636
Aristo code cosmetics and tests update (#2434)
* Update some docu

* Resolve obsolete compile time option

why:
  Not optional anymore

* Update checks

why:
  The notion of what constitutes a valid `Aristo` db has changed due to
  (even more) lazy calculating Merkle hash keys.

* Disable redundant unit test for production
2024-07-01 10:59:18 +00:00
Jordan Hrycaj 8dd038144b
Some cleanups (#2428)
* Remove `dirty` set from structural objects

why:
  Not used anymore, the tree is dirty by default.

* Rename `aristo_hashify` -> `aristo_compute`

* Remove cruft, update comments, cosmetics, etc.

* Simplify `SavedState` object

why:
  The key chaining have become obsolete after extra lazy hashing. There
  is some available space for a state hash to be maintained in future.

details:
  Accept the legacy `SavedState` object serialisation format for a
  while (which will be overwritten by new format.)
2024-06-28 18:43:04 +00:00
Jordan Hrycaj 14c3772545
On demand mpt revisited (#2426)
* rebased from `github/on-demand-mpt`

ackn:
  wip: on-demand mpt construction

  Given that actual data is stored in the `Vertex` structure, it's useful
  to think of the MPT as a cache for computing roots rather than being a
  functional requirement on its own.

  This PR engenders this line of thinking by incrementally computing the
  MPT only when it's needed, ie when a state (or similar) root is needed.

  This has the effect of siginficantly reducing memory usage as well as
  improving performance:

  * no need for dirty-mpt-node book-keeping
  * no need to build complex forest of upcoming hashing work
  * only hashes that are functionally needed are ever computed -
  intermediate nodes whose MTP root is not observed are never computed /
  processed

* Unit test hot fixes

* Unit test hot fixes cont.

(somehow lost that part)

---------

Co-authored-by: Jacek Sieka <jacek@status.im>
2024-06-28 15:03:12 +00:00
Jordan Hrycaj 61bbf40014
Update storage tree admin (#2419)
* Tighten `CoreDb` API for accounts

why:
  Apart from cruft, the way to fetch the accounts state root via a
  `CoreDbColRef` record was unnecessarily complicated.

* Extend `CoreDb` API for accounts to cover storage tries

why:
  In future, this will make the notion of column objects obsolete. Storage
  trees will then be indexed by the account address rather than the vertex
  ID equivalent like a `CoreDbColRef`.

* Apply new/extended accounts API to ledger and tests

details:
  This makes the `distinct_ledger` module obsolete

* Remove column object constructors

why:
  They were needed as an abstraction of MPT sub-trees including storage
  trees. Now, storage trees are handled by the account (e.g. via address)
  they belong to and all other trees can be identified by a constant well
  known vertex ID. So there is no need for column objects anymore.

  Still there are some left-over column object methods wnich will be
  removed next.

* Remove `serialise()` and `PayloadRef` from default Aristo API

why:
  Not needed. `PayloadRef` was used for unstructured/unknown payload
  formats (account or blob) and `serialise()` was used for decodng
  `PayloadRef`. Now it is known in advance what the payload looks
  like.

* Added query function `hasStorageData()` whether a storage area exists

why:
  Useful for supporting `slotStateEmpty()` of the `CoreDb` API

* In the `Ledger` replace `storage.stateEmpty()` by 	`slotStateEmpty()`

* On Aristo, hide the storage root/vertex ID in the `PayloadRef`

why:
  The storage vertex ID is fully controlled by Aristo while the
  `AristoAccount` object is controlled by the application. With the
  storage root part of the `AristoAccount` object, there was a useless
  administrative burden to keep that storage root field up to date.

* Remove cruft, update comments etc.

* Update changed MPT access paradigms

why:
  Fixes verified proxy tests

* Fluffy cosmetics
2024-06-27 09:01:26 +00:00
Jacek Sieka 41cf81f80b
Fix dboptions init (#2391)
For the block cache to be shared between column families, the options
instance must be shared between the various column families being
created. This also ensures that there is only one source of truth for
configuration options instead of having two different sets depending on
how the tables were initialized.

This PR also removes the re-opening mechanism which can double startup
time - every time the database is opened, the log is replayed - a large
log file will take a long time to open.

Finally, several options got correclty implemented as column family
options, including an one that puts a hash index in the SST files.
2024-06-19 10:55:57 +02:00
Jordan Hrycaj 8727307ef4
Aristo uses pre classified tree types cont1 (#2389)
* Provide dedicated functions for deleteing accounts and storage trees

why:
  Storage trees are always linked to an account, so there is no need
  for an application to fiddle about (e.g. re-cycling, unlinking)
  storage tree vertex IDs.

* Remove `delete()` and other cruft from API, `aristo_delete`, etc.

* clean up delete functions

details:
  The delete implementations `deleteImpl()` and `delTreeImpl()` do not
  need to be super generic anymore as all the edge cases are covered by
  the specialised `deleteAccountPayload()`, `deleteGenericData()`, etc.

* Avoid unnecessary re-calculations of account keys

why:
  The function `registerAccountForUpdate()` did extract the storage ID
  (if any) and automatically marked the Merkle keys along the account
  path for re-hashing.

  This would also apply if there was later detected that the account
  or the storage tree did not need to be updated.

  So the `registerAccountForUpdate()` function was split into a part
  which retrieved the storage ID, and another one which marked the
  Merkle keys for re-calculation to be applied only when needed.
2024-06-18 19:30:01 +00:00
Jordan Hrycaj 51f02090b8
Aristo uses pre classified tree types (#2385)
* Remove unused `merge*()` functions (for production)

details:
  Some functionality moved to test suite

* Make sure that only `AccountData` leaf type is exactly used on VertexID(1)

* clean up payload type

* Provide dedicated functions for merging accounts and storage trees

why:
  Storage trees are always linked to an account, so there is no need
  for an application to fiddle about (e.e. creating, re-cycling) with
  storage tree vertex IDs.

* CoreDb: Disable tracer functionality

why:
  Must be updated to accommodate new/changed `Aristo` functions.

* CoreDb: Use new `mergeXXX()` functions

why:
  Makes explicit vertex ID management obsolete for creating new
  storage trees.

* Remove `mergePayload()` and other cruft from API, `aristo_merge`, etc.

* clean up merge functions

details:
  The merge implementation `mergePayloadImpl()` does not need to be super
  generic anymore as all the edge cases are covered by the specialised
  functions `mergeAccountPayload()`, `mergeGenericData()`, and
  `mergeStorageData()`.

* No tracer available at the moment, so disable offending tests
2024-06-18 11:14:02 +00:00
Jordan Hrycaj debba5a620
Coeredb related clean up and maint fixes (#2360)
* Fix initialiser

why:
  Possible crash (app profiling, tracer etc.)

* Update column family options processing

why:
  Same for kvt as for aristo

* Move `AristoDbDualRocks` backend type to the test suite

why:
  So it is not available for production

* Fix typos in API jump table

why:
  Used for tracing and app profiling only. Needed some update

* Purged CoreDb legacy API

why:
  Not needed anymore, was transitionary and disabled.

* Rename `flush` argument to `eradicate` in a DB close context

why:
  The word `eradicate` leaves no doubt what is meant

* Rename `stoFlush()` -> `stoDelete()`

* Rename `core_apps_newapi` -> `core_apps` (not so new anymore)
2024-06-14 11:19:48 +00:00
Jordan Hrycaj 5a5cc6295e
Triggered write event for kvt (#2351)
* bump rockdb

* Rename `KVT` objects related to filters according to `Aristo` naming

details:
  filter* => delta*
  roFilter => balancer

* Compulsory error handling if `persistent()` fails

* Add return code to `reCentre()`

why:
  Might eventually fail if re-centring is blocked. Some logic will be
  added in subsequent patch sets.

* Add column families from earlier session to rocksdb in opening procedure

why:
  All previously used CFs must be declared when re-opening an existing
  database.

* Update `init()` and add rocksdb `reinit()` methods for changing parameters

why:
  Opening a set column families (with different open options) must span
  at least the ones that are already on disk.

* Provide write-trigger-event interface into `Aristo` backend

why:
  This allows to save data from a guest application (think `KVT`) to
  get synced with the write cycle so the guest and `Aristo` save all
  atomically.

* Use `KVT` with new column family interface from `Aristo`

* Remove obsolete guest interface

* Implement `KVT` piggyback on `Aristo` backend

* CoreDb: Add separate `KVT`/`Aristo` backend mode for debugging

* Remove `rocks_db` import from `persist()` function

why:
  Some systems (i.p `fluffy` and friends) use the `Aristo` memory
  backend emulation and do not link against rocksdb when building the
  application. So this should fix that problem.
2024-06-13 18:15:11 +00:00
Jordan Hrycaj a347291413
Aristo use rocksdb cf instead of key pfx (#2332)
* Use RocksDb column families instead of a prefixed single column

why:
  Better performance

* Use structural objects `VertexRef` and `HashKey` in LRU cache for RocksDb

why:
  Avoids repeated de/serialisation
2024-06-10 12:04:22 +00:00
Jordan Hrycaj 392088e5e9
Coredb fix storage tree issues (#2317)
* Code cosmetics

* Re-org `aristo_merge`, internally split into sub-modules

why:
  Became a burden for maintenance because it hosts two different
  functionalities under the same merge paradigm: account/data merge
  and snap proof merge where the latter produces a partial trie.

* Fix CoreDb tracer

* Ledger: fix potential account vs. storage tree sync problems

* Remove bound on the size of removable whole storage trees

* Activate `test_tracer_json`
2024-06-07 10:56:31 +00:00
Jordan Hrycaj 1e65093b3e
Remove obsolete tests (#2307)
* Remove `test_sync_snap`

why:
  Snap sync needs to be re-factored. All the interesting database parts
  from this test suite has been recycled into `Aristo`

* Remove `test_rocksdb_timing`

* Update `all_tests`
2024-06-06 09:29:38 +00:00
Jacek Sieka c876729c4d
Add some basic rocksdb options to command line (#2286)
These options are there mainly to drive experiments, and are therefore
hidden.

One thing that this PR brings in is an initial set of caches and buffers for rocksdb - the set that I've been using during various performance tests to get to a viable baseline performance level.
2024-06-05 17:08:29 +02:00
Jordan Hrycaj 69a158864c
Remove vid recycling feature (#2294) 2024-06-04 15:05:13 +00:00
Jordan Hrycaj f926222fec
Aristo cull journal related stuff (#2288)
* Remove all journal related stuff

* Refactor function names journal*() => delta*(), filter*() => delta*()

* remove `trg` fileld from `FilterRef`

why:
  Same as `kMap[$1]`

* Re-type FilterRef.src as `HashKey`

why:
  So it is directly comparable to `kMap[$1]`

* Moved `vGen[]` field from `LayerFinalRef` to `LayerDeltaRef`

why:
  Then a separate `FilterRef` type is not needed, anymore

* Rename `roFilter` field in `AristoDbRef` => `balancer`

why:
  New name more appropriate.

* Replace `FilterRef` by `LayerDeltaRef` type

why:
  This allows to avoid copying into the `balancer` (see next patch set)
  most of the time. Typically, only one instance is running on the backend
  and the `balancer` is only used as a stage before saving data.

* Refactor way how to store data persistently

why:
  Avoid useless copy when staging `top` layer for persistently saving to
  backend.

* Fix copyright header?
2024-06-03 20:10:35 +00:00
Jordan Hrycaj 0f430c70fd
Aristo avoid storage trie update race conditions (#2251)
* Update TDD suite logger output format choices

why:
  New format is not practical for TDD as it just dumps data across a wide
  range (considerably larder than 80 columns.)

  So the new format can be turned on by function argument.

* Update unit tests samples configuration

why:
  Slightly changed the way to find the `era1` directory

* Remove compiler warnings (fix deprecated expressions and phrases)

* Update `Aristo` debugging tools

* Always update the `storageID` field of account leaf vertices

why:
  Storage tries are weekly linked to an account leaf object in that
  the `storageID` field is updated by the application.

  Previously, `Aristo` verified that leaf objects make sense when passed
  to the database. As a consequence
  * the database was inconsistent for a short while
  * the burden for correctness was all on the application which led
    to delayed error handling which is hard to debug.

  So `Aristo` will internally update the account leaf objects so that
  there are no race conditions due to the storage trie handling

* Aristo: Let `stow()`/`persist()` bail out unless there is a `VertexID(1)`

why:
  The journal and filter logic depends on the hash of the `VertexID(1)`
  which is commonly known as the state root. This implies that all
  changes to the database are somehow related to that.

* Make sure that a `Ledger` account does not overwrite the storage trie reference

why:
  Due to the abstraction of a sub-trie (now referred to as column with a
  hash describing its state) there was a weakness in the `Aristo` handler
  where an account leaf could be overwritten though changing the validity
  of the database. This has been changed and the database will now reject
  such changes.

  This patch fixes the behaviour on the application layer. In particular,
  the column handle returned by the `CoreDb` needs to be updated by
  the `Aristo` database state. This mitigates the problem that a storage
  trie might have vanished or re-apperaed with a different vertex ID.

* Fix sub-trie deletion test

why:
  Was originally hinged on `VertexID(1)` which cannot be wholesale
  deleted anymore after the last Aristo update. Also, running with
  `VertexID(2)` needs an artificial `VertexID(1)` for making `stow()`
  or `persist()` work.

* Cosmetics

* Activate `test_generalstate_json`

* Temporarily `deactivate test_tracer_json`

* Fix copyright header

---------

Co-authored-by: jordan <jordan@dry.pudding>
Co-authored-by: Jacek Sieka <jacek@status.im>
2024-05-30 17:48:38 +00:00
tersec c466edfd8d
change an Aristo function name to avoid Nim stdlib ambiguity (#2240) 2024-05-29 15:08:00 +00:00
Jordan Hrycaj 143f2e99f5
Core db+aristo fixes and tx handling updates (#2164)
* Aristo: Rename journal related sources and functions

why:
  Previously, the naming was hinged on the phrases `fifo`, `filter` etc.
  which reflect the inner workings of cascaded filters. This was
  unfortunate for reading/understanding the source code for actions where
  the focus is the journal as a whole.

* Aristo: Fix buffer overflow (path length truncating error)

* Aristo: Tighten `hikeUp()` stop check, update error code

why:
  Detect dangling vertex links. These are legit with `snap` sync
  processing but not with regular processing.

* Aristo: Raise assert in regular mode `merge()` at a dangling link/edge

why:
  With `snap` sync processing, partial trees are ok and can be amended.
  Not so in regular mode.

  Previously there was only a debug message when a non-legit dangling edge
  was encountered.

* Aristo: Make sure that vertices are copied before modification

why:
  Otherwise vertices from lower layers might also be modified

* Aristo: Fix relaxed mode for validity checker `check()`

* Remove cruft

* Aristo: Update API for transaction handling

details:
+ Split `aristo_tx.nim` into sub-modules
+ Split `forkWith()` into `findTx()` + `forkTx()`
+ Removed `forkTop()`, `forkBase()` (now superseded by new `forkTx()`)

* CoreDb+Aristo: Fix initialiser (missing methods)
2024-05-03 17:38:17 +00:00
Jordan Hrycaj 961f63358e
Core db+aristo update recovery journal management (#2156)
* Aristo: Allow to define/set `FilterID` for journal filter records

why:
  After some changes, the `FilterID` is isomorphic to the `BlockNumber`
  scalar (well, the first 2^64 entries of a `BlockNumber`.)

  The needed change for `FilterID` is that the `FilterID(0)` value is
  valid part of the `FilterID` scalar. A non-valid `FilterID` entry is
  represented by `none(FilterID)`.

* Aristo: Split off function `persist()` as persistent version of `stow()`

why:
  In production, `stow(persistent=false,..)` is currently unused. So,
  using `persist()` rather than `stow(persistent=true,..)` improves
  readability and is better to maintain.

* CoreDb+Aristo: Store block numbers in journal records

why:
  This makes journal records searchable by block numbers

* Aristo: Rename some journal related functions

why:
  The name *journal* is more appropriate to api functions than something
   with *fifo* or *filter*.

* CoreDb+Aristo: Update last/oldest journal state retrieval

* CoreDb+Aristo: Register block number with state root in journal

why:
  No need anymore for extra lookup table `stRootToBlockNum` which maps
  a storage root -> block number.

* Aristo: Remove unused function `getFilUbe()` from api

* CoreDb: Remove now unused virtual table `stRootToBlockNum`

why:
  Was used to map a state root to a block number. This functionality
  is now embedded into the recovery journal backend.

* Turn of API tracking (will fail on `fluffy`)
2024-04-29 20:17:17 +00:00
Jordan Hrycaj 0d4ef023ed
Update aristo journal functionality (#2155)
* Aristo: Code cosmetics, e.g. update some CamelCase names

* CoreDb+Aristo: Provide oldest known state root implied

details:
  The Aristo journal allows to recover earlier but not all state roots.

* Aristo: Fix journal backward index operator, e.g. `[^1]`

* Aristo: Fix journal updater

why:
  The `fifosStore()` store function slightly misinterpreted the update
  instructions when translation is to database `put()` functions. The
  effect was that the journal was ever growing due to stale entries which
  were never deleted.

* CoreDb+Aristo: Provide utils for purging stale data from the KVT

details:
  See earlier patch, not all state roots are available. This patch
  provides a mapping from some state root to a block number and allows to
  remove all KVT data related to a particular block number

* Aristo+Kvt: Implement a clean up schedule for expired data in KVT

why:
  For a single state ledger like `Aristo`, there is only a limited
  backlog of states. So KVT data (i.e. headers etc.) are cleaned up
  regularly

* Fix copyright year
2024-04-26 13:43:52 +00:00
Jordan Hrycaj b9187e0493
Aristo selective read cashing for rocksdb backend (#2145)
* Aristo+Kvt: Better RocksDB profiling

why:
  Providing more detailed information, mainly for `Aristo`

* Aristo: Renamed journal `stats()` to `capacity()`

why:
  `Stats()` was a misnomer

* Aristo: Provide backend read caches for key and vertex IDs

why:
  Dedicated LRU caching for particular types gives a throughput advantage.
  The sizes of the LRU queues used for caching are currently constant
  but might be adjusted at a later time.

* Fix copyright year
2024-04-22 19:02:22 +00:00
Jordan Hrycaj 7d9e1d8607
Misc updates for full sync (#2140)
* Code cosmetics

* Aristo+Kvt: Fix api wrappers

why:
  Api setup killed the backend descriptor when backend mapping was
  disabled.

* Aristo: Implement masked profiling entries

why:
  Database backend should be listed but not counted in tally

* CoreDb: Simplify backend() methods

why:
  DBMS backend access Was provided very early and over engineered. Now
  there are only two backend machines, one for `Kvt` and the other one
  for an `Mpt` available only via new API.

* CoreDb: Code cleanup regarding descriptor types

* CoreDb: Refactor/redefine `persistent()` methods

why:
  There were `persistent()` methods for any type of caching storage
  facilities `Kvt`, `Mpt`, `Phk`, and `Acc`. Now there is only a single
  `persistent()` method storing all facilities in tandem (similar to
  how transactions work.)

  For non shared `Kvt` tables, there is now an extra storage method
  `saveOffSite()`.

* CoreDb lingo update: `trie` becomes `column`

why:
  Notion of a `trie` is pretty much hidden by the new `CoreDb` api.
  Revealed are sort of database columns for accounts an storage data,
  any of which have an internal state represented by a Keccack hash.
  So a `trie` or `MPT` becomes a `column` and a `rootHash` becomes a
  column state.

* Aristo: rename backend filed `filters` => `journal`

* Update full sync logging

details:
  + Disable eth handler noise while syncing
  + Log journal depth (if available)

* Fix copyright year

* Fix cruft and unwanted imports
2024-04-19 18:37:27 +00:00
Jordan Hrycaj 1502014e36
Core db+aristo re org tracer (#2123)
* Kvt: Update API hooks

* Aristo: Generalised merging snap proofs, now for multiple state roots

why:
  This accommodates pre-loading partial tries for unit tests

* Aristo: Update some unit tests

* CoreDb+Aristo: Re-factor tracer

why:
  Was bonkers anyway. The main change is that the trace journal is now
  kept in a way similar to a transaction layer so that it can predictably
  interact with DB transactions.

* Ledger: Debugging helper

* Update tracer unit test applicable for `Aristo`

* Fix copyright year

* Disable `dump()` function as compile time default

why:
  This needs to pull in the `rocks_db` library at compile time.
2024-04-03 15:48:35 +00:00
Jordan Hrycaj 99238ce0e4
Core db maintenance update (#2087)
* CoreDb+Aristo: Fix handler code

* Aristo+Kvt: Remove cruft

* Aristo+Kvt: The function `forkTop()` always provides a single transaction

why:
  Previously it provided a single squashed tx only if there were any. Now
  it will provide a blind one if there were none.

* Fix Copyright header
2024-03-20 15:15:56 +00:00
andri lim c41206be39
Fix styles and reduce compiler warnings (#2086)
* Fix styles and reduce compiler warnings

* Fix copyright year
2024-03-20 14:35:38 +07:00