Commit Graph

28 Commits

Author SHA1 Message Date
Jordan Hrycaj 5462c05dc6
Core db update api tracking (#1907)
* Fix copyright year

* Show elapsed times with enabled `CoreDb` API tracking

* Show elapsed times with enabled `LedgerRef` API tracking

* Reorg `CoreDb` auto destructors for `Aristo` DB

why:
  While `Aristo` supports some parallelism for concurrent database access,
  this comes with a price of management overhead. With a naive approach,
  the auto-destructor will slow down execution because the ledger and
  evm treat the database in a shared mode where a DB descriptor is just
  created and thrown away shortly after.

  This is reflected in the `Coredb` abstraction layer above `Aristo`/`Kvt`
  where a few `Shared` type descriptors are cached and a shared reference
  is returned rather than a disposable new object.

* For `CoreDb` support transaction level tracking

details:
  This is mainly an extra for the legacy DB as `Aristo` and `Kvt` support
  this already.

  Also return an error on the legacy DB backend when `persistent()` is
  called while there are transactions pending (the `persistent()` call
  does nothing otherwise on the legacy backend.)

* Clear compiler warnings (remove unused variables etc.)
2023-11-24 22:16:21 +00:00
Jordan Hrycaj 610e2d338d
Core db fix legacy db root vertex fetcher (#1899)
* Using different `tmp` directories for `Kvt` and `Aristo`

why:
  Closing one database would leave the other set of directories
  incomplete.

* Code cosmetics, silence compiler

* Fix typo `EMPTY_ROOT_HASH` vs. `EMPTY_CODE_HASH`

* Fix copyright years
2023-11-20 20:22:27 +00:00
Jordan Hrycaj 6e0397e276
Aristo and ledger small updates (#1888)
* Fix debug noise in `hashify()` for perfectly normal situation

why:
  Was previously considered a fixable error

* Fix test sample file names

why:
  The larger test file `goerli68161.txt.gz` is already in the local
  archive. So there is no need to use the smaller one from the external
  repo.

* Activate `accounts_cache` module from `db/ledger`

why:
  A copy of the original `accounts_cache.nim` source to be integrated
  into the `Ledger` module wrapper which allows to switch between
  different `accounts_cache` implementations unser tha same API.

details:
  At a later state, the `db/accounts_cache.nim` wrapper will be
  removed so that there is only one access to that module via
  `db/ledger/accounts_cache.nim`.

* Fix copyright headers in source code
2023-11-08 16:52:25 +00:00
Jordan Hrycaj 4feaa2cfab
Aristo db update for short nodes key edge cases (#1887)
* Aristo: Provide key-value list signature calculator

detail:
  Simple wrappers around `Aristo` core functionality

* Update new API for `CoreDb`

details:
+ Renamed new API functions `contains()` => `hasKey()` or `hasPath()`
  which disables the `in` operator on non-boolean 	`contains()` functions
+ The functions `get()` and `fetch()` always return a not-found error if
  there is no item, available. The new functions `getOrEmpty()` and
  `mergeOrEmpty()` return an an empty `Blob` if there is no such key
  found.

* Rewrite `core_apps.nim` using new API from `CoreDb`

* Use `Aristo` functionality for calculating Merkle signatures

details:
  For debugging, the `VerifyAristoForMerkleRootCalc` can be set so
  that `Aristo` results will be verified against the legacy versions.

* Provide general interface for Merkle signing key-value tables

details:
  Export `Aristo` wrappers

* Activate `CoreDb` tests

why:
  Now, API seems to be stable enough for general tests.

* Update `toHex()` usage

why:
  Byteutils' `toHex()` is superior to `toSeq.mapIt(it.toHex(2)).join`

* Split `aristo_transcode` => `aristo_serialise` + `aristo_blobify`

why:
+ Different modules for different purposes
+ `aristo_serialise`: RLP encoding/decoding
+ `aristo_blobify`: Aristo database encoding/decoding

* Compacted representation of small nodes' links instead of Keccak hashes

why:
  Ethereum MPTs use Keccak hashes as node links if the size of an RLP
  encoded node is at least 32 bytes. Otherwise, the RLP encoded node
  value is used as a pseudo node link (rather than a hash.) Such a node
  is nor stored on key-value database. Rather the RLP encoded node value
  is stored instead of a lode link in a parent node instead. Only for
  the root hash, the top level node is always referred to by the hash.

  This feature needed an abstraction of the `HashKey` object which is now
  either a hash or a blob of length at most 31 bytes. This leaves two
  ways of representing an empty/void `HashKey` type, either as an empty
  blob of zero length, or the hash of an empty blob.

* Update `CoreDb` interface (mainly reducing logger noise)

* Fix copyright years (to make `Lint` happy)
2023-11-08 12:18:32 +00:00
Jordan Hrycaj 6d132811ba
Core db update providing additional results code interface (#1776)
* Split `core_db/base.nim` into several sources

* Rename `core_db/legacy.nim` => `core_db/legacy_db.nim`

* Update `CoreDb` API, dual methods returning `Result[]` or plain value

detail:
  Plain value methods implemet the legacy API, they defect on error results

* Redesign `CoreDB` direct backend access

why:
  Made the `backend` directive integral part of the API

* Discontinue providing unused or otherwise available functions

details:
+ setTransactionID() removed, not used and not easily replicable in Aristo
+ maybeGet() removed, available via direct backend access
+ newPhk() removed, never used & was experimental anyway

* Update/reorg backend API

why:
+ Added error print function `$$()`
+ General descriptor completion (and optional validation) via `bless()`

* Update `Aristo`/`Kvt` exception handling

why:
  Avoid `CatchableError` exceptions, rather pass them as error code where
  appropriate.

* More `CoreDB` compliant `Aristo` and `Kvt` methods

details:
+ Providing functions like `contains()`, `getVtxRc()` (returns `Result[]`).
+ Additional error code: `NotImplemented`

* Rewrite/reorg of Aristo DB constructor

why:
  Previously used global object `DefaultQidLayoutRef` as default
  initialiser. This object was created at compile time which lead to
  non-gc safe functions.

* Update nimbus/db/core_db/legacy_db.nim

Co-authored-by: Kim De Mey <kim.demey@gmail.com>

* Update nimbus/db/aristo/aristo_transcode.nim

Co-authored-by: Kim De Mey <kim.demey@gmail.com>

* Update nimbus/db/core_db/legacy_db.nim

Co-authored-by: Kim De Mey <kim.demey@gmail.com>

---------

Co-authored-by: Kim De Mey <kim.demey@gmail.com>
2023-09-26 10:21:13 +01:00
Jordan Hrycaj 6bc55d4e6f
Core db aristo and kvt updates preparing for integration (#1760)
* Kvt: Implemented multi-descriptor access on the same backend

why:
  This behaviour mirrors the one of Aristo and can be used for
  simultaneous transactions on Aristo + Kvt

* Kvt: Update database iterators

why:
  Forgot to run on the top layer first

* Kvt: Misc fixes

* Aristo, use `openArray[byte]` rather than `Blob` in prototype

* Aristo, by default hashify right after cloning descriptor

why:
  Typically, a completed descriptor is expected after cloning. Hashing
  can be suppressed by argument flag.

* Aristo provides `replicate()` iterator, similar to legacy `replicate()`

* Aristo API fixes and updates

* CoreDB: Rename `legacy_persistent` => `legacy_rocksdb`

why:
  More systematic, will be in line with Aristo DB which might have
  more than one persistent backends

* CoreDB: Prettify API sources

why:
  Better to read and maintain

details:
  Annotating with custom pragmas which cleans up the prototypes

* CoreDB: Update MPT/put() prototype allowing `CatchableError`

why:
  Will be needed for Aristo API (legacy is OK with `RlpError`)
2023-09-18 21:20:28 +01:00
Jordan Hrycaj cd1d370543
Aristo db api extensions for use as core db backend (#1754)
* Update docu

* Update Aristo/Kvt constructor prototype

why:
  Previous version used an `enum` value to indicate what backend is to
  be used. This was replaced by using the backend object type.

* Rewrite `hikeUp()` return code into `Result[Hike,(Hike,AristoError)]`

why:
  Better code maintenance. Previously, the `Hike` object was returned. It
  had an internal error field so partial success was also available on
  a failure. This error field has been removed.

* Use `openArray[byte]` rather than `Blob` in functions prototypes

* Provide synchronised multi instance transactions

why:
  The `CoreDB` object was geared towards the legacy DB which used a single
  transaction for the key-value backend DB. Different state roots are
  provided by the backend database, so all instances work directly on the
  same backend.

  Aristo db instances have different in-memory mappings (aka different
  state roots) and the transactions are on top of there mappings. So each
  instance might run different transactions.

  Multi instance transactions are a compromise to converge towards the
  legacy behaviour. The synchronised transactions span over all instances
  available at the time when base transaction was opened. Instances
  created later are unaffected.

* Provide key-value pair database iterator

why:
  Needed in `CoreDB` for `replicate()` emulation

also:
  Some update of internal code

* Extend API (i.e. prototype variants)

why:
  Needed for `CoreDB` geared towards the legacy backend which has a more
  basic API than Aristo.
2023-09-15 16:23:53 +01:00
andri lim 56215ed83f
Bump stint to v2.0: new array backend (#1747)
* Bump stint to v2.0: new array backend
2023-09-13 09:32:38 +07:00
Jordan Hrycaj 8e00143313
Aristo db code massage n cosmetics (#1745)
* Rewrite remaining `AristoError` return code into `Result[void,AristoError]`

why:
  Better code maintenance

* Update import sections

* Update Aristo DB paths

why:
 More systematic so directory can be shared with other DB types

* More cosmetcs

* Update unit tests runners

why:
  Proper handling of persistent and mem-only DB. The latter can be
  consistently triggered by an empty DB path.
2023-09-12 19:45:12 +01:00
Jordan Hrycaj 8e46953390
Aristo db state root repos and reorg (#1744)
* Reorg of distributed backend access

details:
  Now handled via API provided in `aristo_desc`.

* Rename `checkCache()` => `checkTop()`

why:
  Better naming for top layer cache checker

also:
  Provide cascaded fifos checker

* Provide `eq` directive for finding filter by exact filter ID (think block number)

* Some code beautification (for better code reading)

* State root reposition and reorg

details:
  Repositioning is supported by forking a new descriptor. Reorg is then
  accomplished by writing this forked state on the backend database.
2023-09-11 21:38:49 +01:00
Jordan Hrycaj 3936d4d0ad
Aristo db fixes n updates needed for filter fifo (#1728)
* Set scheduler state as part of the backend descriptor

details:
  Moved type definitions `QidLayoutRef` and `QidSchedRef` to
 `desc_structural.nim` so that it shares the same folder as
  `desc_backend.nim`

* Automatic filter queue table initialisation in backend

details:
  Scheduler can be tweaked or completely disabled

* Updated backend unit tests

details:
+ some code clean up/beautification, reads better now
+ disabled persistent filters so that there is no automated filter
   management which will be implemented next

* Prettify/update unit tests source code

details:
  Mostly replacing the `check()` paradigm by `xCheck()`

* Somewhat simplified backend type management

why:
  Backend objects are labelled with a `BackendType` symbol where the
  `BackendVoid` label is implicitly assumed for a `nil` backend object
  reference.

  To make it easier, a `kind()` function is used now applicable to
  `nil` references as well.

* Fix DB storage layout for filter objects

why:
  Need to store the filter ID with the object

* Implement reverse [] index on fifo

why:
  An integer index argument on `[]` retrieves the QueueID (label) of the
  fifo item while a QueueID argument on `[]` retrieves the index (so
  it is inverse to the former variant).

* Provide iterator over filters as fifo

why:
  This iterator goes along the cascased fifo structure (i.e. in
  historical order)
2023-09-05 14:57:20 +01:00
Jordan Hrycaj 465d694834
Aristo db implement filter storage scheduler (#1713)
* Rename FilterID => QueueID

why:
  The current usage does not identify a particular filter but uses it as
  storage tag to manage it on the database (to be organised in a set of
  FIFOs or queues.)

* Split `aristo_filter` source into sub-files

why:
  Make space for filter management API

* Store filter queue IDs in pairs on the backend

why:
  Any pair will will describe a FIFO accessed by bottom/top IDs

* Reorg some source file names

why:
  The "aristo_" prefix for make local/private files is tedious to
  use, so removed.

* Implement filter slot scheduler

details:
  Filters will be stored on the database on cascaded FIFOs. When a FIFO
  queue is full, some filter items are bundled together and stored on the
  next FIFO.
2023-08-25 23:53:59 +01:00
Jordan Hrycaj 124ac064c6
Aristo db store filters on backend (#1703)
* Simplify RocksDB sub-tables iterator

* Implement `filter` storage on backend db

details:
  Unit tests working
2023-08-22 19:44:54 +01:00
Jordan Hrycaj 445fa75251
Aristo db consolidate and clean up (#1699)
* Removed dedicated transcoder tests

why:
  will implicitely be provided by other tests:
  + encode/write -> hashify -> test_tx
  + decode/read -> merge raw nodes -> test_tx
  + de/blobfiy -> backend operations, taext_tx, test_backend, test_filter

* Clarify how the vertex ID generator state is accessed from the backend

why:
  This state is a list of unused vertex IDs. It was just stored somewhere
  on the backend which details were exposed when iterating over some
  sub-table(s).

  As there will be more such single information records, an admin
  sub-tables has been defined (formerly ID generator table) with dedicated
  access keys and type. Also, the iterator over the single ID generator
  state item has been removed. It must be accessed via the `get()`
  interface.

* Remove trailing space from file name

why:
  fixes windows bail out
2023-08-21 15:58:30 +01:00
Jordan Hrycaj 4c9141ffac
Aristo db implement filter serialisation for storage (#1695)
* Remove concept of empty/blind filters

why:
  Not needed. A non-existent filter is is coded as a nil reference.

* Slightly generalised backend iterators

why:
 * VertexID as key for the ID generator state makes no sense
 * there will be more tables addressed by non-VertexID keys

* Store serialised/blobified vertices on memory backend

why:
  This is more in line with the RocksDB backend so more appropriate
  for testing when comparing behaviour. For a speedy memory database,
  a backend-less variant should be used.

* Drop the `Aristo` prefix from names `AristoLayerRef`, etc.

* Suppress compiler warning

why:
  duplicate imports

* Add filter serialisation transcoder

why:
  Will be used as storage format
2023-08-18 20:46:55 +01:00
Jordan Hrycaj 3078c207ca
Aristo db implement distributed backend access (#1688)
* Fix hashing algorithm

why:
  Particular case where a sub-tree is on the backend, linked by an
  Extension vertex to the top level.

* Update backend verification to report `dirty` top layer

* Implement distributed merge of backend filters

* Implement distributed backend access management

details:
  Implemented and tested as described in chapter 5 of the `README.md`
  file.
2023-08-17 14:42:01 +01:00
Jordan Hrycaj 01fe172738
Aristo db integrate hashify into tx (#1679)
* Renamed type `NoneBackendRef` => `VoidBackendRef`

* Clarify names: `BE=filter+backend` and `UBE=backend (unfiltered)`

why:
  Most functions used full names as `getVtxUnfilteredBackend()` or
  `getKeyBackend()`. After defining abbreviations (and its meaning) it
   seems easier to use `getVtxUBE()` and `getKeyBE()`.

* Integrate `hashify()` process into transaction logic

why:
  Is now transparent unless explicitly controlled.

details:
  Cache changes imply setting a `dirty` flag which in turn triggers
  `hashify()` processing in transaction and `pack()` directives.

* Removed `aristo_tx.exec()` directive

why:
  Inconsistent implementation, functionality will be provided with a
  different paradigm.
2023-08-11 18:23:57 +01:00
Jordan Hrycaj 09fabd04eb
Aristo db use filter betw backend and tx cache (#1678)
* Provide deep copy for each transaction layer

why:
  Localising changes. Selective deep copy was just overlooked.

* Generalise vertex ID generator state reorg function `vidReorg()`

why:
  makes it somewhat easier to handle when saving layers.

* Provide dummy back end descriptor `NoneBackendRef`

* Optional read-only filter between backend and transaction cache

why:
  Some staging area for accumulating changes to the backend DB. This
  will eventually be an access layer for emulating a backend with
  multiple/historic state roots.

* Re-factor `persistent()` with filter between backend/tx-cache => `stow()`

why:
  The filter provides an abstraction from the physically stored data on
  disk. So, there can be several MPT instances using the same disk data
  with different state roots. Of course, all the MPT instances should
  not differ too much for practical reasons :).

TODO:
  Filter administration tools need to be provided.
2023-08-10 21:01:28 +01:00
Jordan Hrycaj 71c91e2280
Aristo db refactor tx paradim (#1674)
* Better error handling

why:
  Bail out on some error as early as possible before any changes.

* Implement `fetch()` as opposite of `merge()`

rationale:
  In the `Aristo` realm, the action named `fetch()` and `merge()` indicate
  leaf value related actions on the MPT, while actions `get()` and `put()`
   handle vertex or hash key related operations that constitute the MPT.

* Re-factor `merge()` prototypes

why:
  The most used variant of `merge()` should have the simplest prototype.

* Persistent DB constructor needs to import `aristo/aristo_init/persistent`

why:
  Most applications use memory DB anyway. This avoids linking `-lrocksdb`
  or any other back end libraries by default.

* Re-factor transaction module

why:
  Got the paradigm wrong. The transaction descriptor did replace the
  database one but should be handled separately.
2023-08-07 18:45:23 +01:00
Jordan Hrycaj dd1c8ed6f2
Aristo db update delete functionality (#1621)
* Fix missing branch checks in transcoder

why:
  Symmetry problem. `Blobify()` allowed for encoding degenerate branch
  vertices while `Deblobify()` rejected decoding wrongly encoded data.

* Update memory backend so that it rejects storing bogus vertices.

why:
  Error behaviour made similar to the rocks DB backend.

* Make sure that leaf vertex IDs are not repurposed

why:
  This makes it easier to record leaf node changes

* Update error return code for next()/right() traversal

why:
  Returning offending vertex ID (besides error code) helps debugging

* Update Merkle hasher for deleted nodes

why:
  Not implemented, yet

also:
  Provide cache & backend consistency check functions. This was
  partly re-implemented from `hashifyCheck()`

* Simplify some unit tests

* Fix delete function

why:
  Was conceptually wrong
2023-06-30 23:22:33 +01:00
Jordan Hrycaj 15cc9f962e
Aristo db update vertex caching when merging (#1606)
* Added missing deferred cleanup directive to sub-test functions

why:
  Rocksdb keeps the files locked for a short while leading to errors. This
  was previously solved my using different db sub-directories

* Provide vertex deep-copy function globally.

why:
  is just handy

* Avoid unnecessary vertex caching when merging proof nodes

also:
  Run all merge tests on the rocksdb backend
  Previously, proof node tests were run without backend
2023-06-22 20:21:33 +01:00
Jordan Hrycaj 83dbe87159
Aristo db update foreground caching (#1605)
* Fix vertex ID generator state handling for rocksdb backend

why:
 * Key error in walk iterator
 * Needs to be loaded when opening the database

* Use non-zero sub-table prefixes for rocksdb

why:
  Handy for debugging

* Fix error code for missing key on rocksdb backend

why:
  Previously returned `VOID_HASH_KEY` rather than `GetKeyNotFound`

* Explicitly copy vertex data between internal table and function/result argument

why:
  Function argument or return reference may still refer to the same data
  object.

* Updated error symbols

why:
  Error symbol names for the hike module now start with the prefix `Hike`.

* Write back modified branch node into local top layer cache

why:
  With the backend available, the source of the branch node references
  might not be the top layer cache. So any change must be explicitely
  recorded.
2023-06-22 12:13:24 +01:00
Jordan Hrycaj 4b66f93274
Aristo db with storage backends (#1603)
* Generalised Aristo DB constructor for any type of backend

details:
  * Records to be deleted are represented as key-void (rather than
    key-value) pairs by the put-function arguments
  * Allow direct driver access, iterators as example implementation and
    for testing.

* Provide backend storage interface

details:
  Stores the top layer onto backend tables

* Implemented Rocks DB backend

details:
  Transaction based `put()` functionality
  Iterators (based on direct RocksDB access)
2023-06-20 14:26:25 +01:00
Jordan Hrycaj d7f40516a7
Detach from snap/sync declarations & definitions (#1601)
why:
  Tests and some basic components were originally borrowed from the
  snap/sync implementation. These have fully been re-implemented.
2023-06-12 19:16:03 +01:00
Jordan Hrycaj 0308dfac4f
Aristo db address sup trie items properly (#1600)
* Fix include

why:
  Eth67 not default yet so that got missed

* Rename `LeafKey` => `LeafTie`

why:
  Name is a pen picture of what this object is for. Also, it avoids the
  ubiquitous term `key`.

* Provided `getOrVoid()` wrapper for `getOrDefault()`

also:
  Provide `isValid()` syntactic sugar for `.isNil.not`, `!= 0` etc.
  Reorg descriptor source, split into sub-sources

* Bundled `NodeKey` objects with root ID and called it `HashLabel`

why:
  `NodeKey` (aka repurposed Hash265) objects are unique only within a
  particular sub-trie (e.g. storage slots) which are kept separated
  (i.e non-interleaved) by design. This is not applied to the backend
  as the map VertexID->NodeKey labelling the nodes needs not be injective.

  For the in-memory database (transaction) layers, the injective map
  VertexID->(VertexID,NodeKey) is used where the first field of the image
  tuple is the root ID of the sub-trie the `NodeKey` object is valid. So
  identical storage tries for different accounts can be represented.
2023-06-12 14:48:47 +01:00
Jordan Hrycaj 932a2140f2
Aristo db supporting forest and layered tx architecture (#1598)
* Exclude some storage tests

why:
  These test running on external dumps slipped through. The particular
  dumps were reported earlier as somehow dodgy.

  This was changed in `#1457` but having a second look, the change on
  hexary_interpolate.nim(350) might be incorrect.

* Redesign `Aristo DB` descriptor for transaction based layers

why:
  Previous descriptor layout made it cumbersome to push/pop
  database delta layers.

  The new architecture keeps each layer with the full delta set
  relative to the database backend.

* Keep root ID as part of the `Patricia Trie` leaf path

why;
  That way, forests are supported
2023-06-09 12:17:37 +01:00
Jordan Hrycaj 2fc349feb9
Aristo db merkle hashify functionality added (#1593)
* Keep vertex ID generator state with each db-layer

why:
  The vertex ID generator state is part of the difference to the below
  layer

* Move otherwise unused source to test directory

* Add Merkle hash generator

also:
  * Verification facility for debugging
  * Empty Merkle key hashes encoded as `EMPTY_ROOT_HASH`
2023-05-30 22:21:15 +01:00
Jordan Hrycaj ff0fc98fdf
Multi layer architecture 4 aristo db (#1581)
* Cosmetics, renamed fields (eVtx, bVtx) -> (eVid, bVid)

* Multilayered delta architecture for Aristo DB

details:
  Any VertexID or data retrieval needs to go down the rabbit hole and
  fetch/get/manipulate the bottom layer -- even without explicit
  backend.

* Direct reference to backend from top-level layer

why:
  Some services as the vid management needs to be synchronised among all
  layers. So access is optimised.
2023-05-14 18:43:01 +01:00