The state and account MPT:s currenty share key space in the database
based on that vertex id:s are assigned essentially randomly, which means
that when two adjacent slot values from the same contract are accessed,
they might reside at large distance from each other.
Here, we prefix each vertex id by its root causing them to be sorted
together thus bringing all data belonging to a particular contract
closer together - the same effect also happens for the main state MPT
whose nodes now end up clustered together more tightly.
In the future, the prefix given to the storage keys can also be used to
perform range operations such as reading all the storage at once and/or
deleting an account with a batch operation.
Notably, parts of the API already supported this rooting concept while
parts didn't - this PR makes the API consistent by always working with a
root+vid.
These representations use ~15-20% less data compared to the status quo,
mainly by removing redundant zeroes in the integer encodings - a
significant effect of this change is that the various rocksdb caches see
better efficiency since more items fit in the same amount of space.
* use RLP encoding for `VertexID` and `UInt256` wherever it appears
* pack `VertexRef`/`PayloadRef` more tightly
* creating a seq from a table that holds lots of changes means copying
all data into the table - this can be several GB of data while syncing
blocks
* nim fails to optimize the moving of the `WidthFirstForest` - the real
solution is to not construct a `wff` to begin with, but this PR provides
relief while that is being worked on
This spike fix allows us to bump the rocksdb cache by another 2 GB and
still have a significantly lower peak memory usage during sync.
For the block cache to be shared between column families, the options
instance must be shared between the various column families being
created. This also ensures that there is only one source of truth for
configuration options instead of having two different sets depending on
how the tables were initialized.
This PR also removes the re-opening mechanism which can double startup
time - every time the database is opened, the log is replayed - a large
log file will take a long time to open.
Finally, several options got correclty implemented as column family
options, including an one that puts a hash index in the SST files.
* Fix initialiser
why:
Possible crash (app profiling, tracer etc.)
* Update column family options processing
why:
Same for kvt as for aristo
* Move `AristoDbDualRocks` backend type to the test suite
why:
So it is not available for production
* Fix typos in API jump table
why:
Used for tracing and app profiling only. Needed some update
* Purged CoreDb legacy API
why:
Not needed anymore, was transitionary and disabled.
* Rename `flush` argument to `eradicate` in a DB close context
why:
The word `eradicate` leaves no doubt what is meant
* Rename `stoFlush()` -> `stoDelete()`
* Rename `core_apps_newapi` -> `core_apps` (not so new anymore)
* bump rockdb
* Rename `KVT` objects related to filters according to `Aristo` naming
details:
filter* => delta*
roFilter => balancer
* Compulsory error handling if `persistent()` fails
* Add return code to `reCentre()`
why:
Might eventually fail if re-centring is blocked. Some logic will be
added in subsequent patch sets.
* Add column families from earlier session to rocksdb in opening procedure
why:
All previously used CFs must be declared when re-opening an existing
database.
* Update `init()` and add rocksdb `reinit()` methods for changing parameters
why:
Opening a set column families (with different open options) must span
at least the ones that are already on disk.
* Provide write-trigger-event interface into `Aristo` backend
why:
This allows to save data from a guest application (think `KVT`) to
get synced with the write cycle so the guest and `Aristo` save all
atomically.
* Use `KVT` with new column family interface from `Aristo`
* Remove obsolete guest interface
* Implement `KVT` piggyback on `Aristo` backend
* CoreDb: Add separate `KVT`/`Aristo` backend mode for debugging
* Remove `rocks_db` import from `persist()` function
why:
Some systems (i.p `fluffy` and friends) use the `Aristo` memory
backend emulation and do not link against rocksdb when building the
application. So this should fix that problem.
* Use RocksDb column families instead of a prefixed single column
why:
Better performance
* Use structural objects `VertexRef` and `HashKey` in LRU cache for RocksDb
why:
Avoids repeated de/serialisation
* Fix `blobify()` for `SavedState` object
why:
Have to treat varying sizes for `HashKey`, i.p. for an empty key which
has zero size.
* Store correct block number in `SavedState` record
why:
Stored `block-number - 1` for some obscure reason.
* Cosmetcs, docu
These options are there mainly to drive experiments, and are therefore
hidden.
One thing that this PR brings in is an initial set of caches and buffers for rocksdb - the set that I've been using during various performance tests to get to a viable baseline performance level.
The `rocksdb` version shipped with distributions is typically old and
therefore often lacks features we use - it also doesn't match the one
assumed by nim-rocksdb leading to ABI mismatch risks.
Instead of depending on the system rocksdb, we'll now use the rocksdb
version assumed by nim-rocksdb and locked in its vendor folder by always
building it together with nimbus.
This avoids the problem of unknown rocksdb versions at a (small) cost to
build time.
CI caching and full windows support for building from source [remains
TODO](https://github.com/status-im/nim-rocksdb/issues/44).
* Remove all journal related stuff
* Refactor function names journal*() => delta*(), filter*() => delta*()
* remove `trg` fileld from `FilterRef`
why:
Same as `kMap[$1]`
* Re-type FilterRef.src as `HashKey`
why:
So it is directly comparable to `kMap[$1]`
* Moved `vGen[]` field from `LayerFinalRef` to `LayerDeltaRef`
why:
Then a separate `FilterRef` type is not needed, anymore
* Rename `roFilter` field in `AristoDbRef` => `balancer`
why:
New name more appropriate.
* Replace `FilterRef` by `LayerDeltaRef` type
why:
This allows to avoid copying into the `balancer` (see next patch set)
most of the time. Typically, only one instance is running on the backend
and the `balancer` is only used as a stage before saving data.
* Refactor way how to store data persistently
why:
Avoid useless copy when staging `top` layer for persistently saving to
backend.
* Fix copyright header?
* Add persistent last state stamp feature
why:
This allows to run `CoreDb` without journal
* Start `CoreDb` without journal
* Remove journal related functions from `CoredDb`
* Update TDD suite logger output format choices
why:
New format is not practical for TDD as it just dumps data across a wide
range (considerably larder than 80 columns.)
So the new format can be turned on by function argument.
* Update unit tests samples configuration
why:
Slightly changed the way to find the `era1` directory
* Remove compiler warnings (fix deprecated expressions and phrases)
* Update `Aristo` debugging tools
* Always update the `storageID` field of account leaf vertices
why:
Storage tries are weekly linked to an account leaf object in that
the `storageID` field is updated by the application.
Previously, `Aristo` verified that leaf objects make sense when passed
to the database. As a consequence
* the database was inconsistent for a short while
* the burden for correctness was all on the application which led
to delayed error handling which is hard to debug.
So `Aristo` will internally update the account leaf objects so that
there are no race conditions due to the storage trie handling
* Aristo: Let `stow()`/`persist()` bail out unless there is a `VertexID(1)`
why:
The journal and filter logic depends on the hash of the `VertexID(1)`
which is commonly known as the state root. This implies that all
changes to the database are somehow related to that.
* Make sure that a `Ledger` account does not overwrite the storage trie reference
why:
Due to the abstraction of a sub-trie (now referred to as column with a
hash describing its state) there was a weakness in the `Aristo` handler
where an account leaf could be overwritten though changing the validity
of the database. This has been changed and the database will now reject
such changes.
This patch fixes the behaviour on the application layer. In particular,
the column handle returned by the `CoreDb` needs to be updated by
the `Aristo` database state. This mitigates the problem that a storage
trie might have vanished or re-apperaed with a different vertex ID.
* Fix sub-trie deletion test
why:
Was originally hinged on `VertexID(1)` which cannot be wholesale
deleted anymore after the last Aristo update. Also, running with
`VertexID(2)` needs an artificial `VertexID(1)` for making `stow()`
or `persist()` work.
* Cosmetics
* Activate `test_generalstate_json`
* Temporarily `deactivate test_tracer_json`
* Fix copyright header
---------
Co-authored-by: jordan <jordan@dry.pudding>
Co-authored-by: Jacek Sieka <jacek@status.im>
* Aristo: Generalise alien/guest interface for piggiback on database
* Aristo: Code cosmetics
* CoreDb+Kvt: Update transaction API
why:
Use single addressable function `forkTx(backLevel: int)` as used
in `Aristo`. So `Kvt` can be synced simultaneously to `Aristo`.
also:
Refactored `kvt_tx.nim` in a similar fashion to `Aristo`.
* Kvt: Replace `LayerDelta` object by reference
why:
Will be needed when introducing filters
* Kvt: Remodel backend filter facility similar to `Aristo`
why:
This allows to operate on several KVT instances simultaneously.
* CoreDb+Kvt: Fix on-disk storage
why:
Overlooked name change: `stow()` => `persist()` for permanent storage
* Fix copyright headers
* Aristo+Kvt: Better RocksDB profiling
why:
Providing more detailed information, mainly for `Aristo`
* Aristo: Renamed journal `stats()` to `capacity()`
why:
`Stats()` was a misnomer
* Aristo: Provide backend read caches for key and vertex IDs
why:
Dedicated LRU caching for particular types gives a throughput advantage.
The sizes of the LRU queues used for caching are currently constant
but might be adjusted at a later time.
* Fix copyright year
* Code cosmetics
* Aristo+Kvt: Fix api wrappers
why:
Api setup killed the backend descriptor when backend mapping was
disabled.
* Aristo: Implement masked profiling entries
why:
Database backend should be listed but not counted in tally
* CoreDb: Simplify backend() methods
why:
DBMS backend access Was provided very early and over engineered. Now
there are only two backend machines, one for `Kvt` and the other one
for an `Mpt` available only via new API.
* CoreDb: Code cleanup regarding descriptor types
* CoreDb: Refactor/redefine `persistent()` methods
why:
There were `persistent()` methods for any type of caching storage
facilities `Kvt`, `Mpt`, `Phk`, and `Acc`. Now there is only a single
`persistent()` method storing all facilities in tandem (similar to
how transactions work.)
For non shared `Kvt` tables, there is now an extra storage method
`saveOffSite()`.
* CoreDb lingo update: `trie` becomes `column`
why:
Notion of a `trie` is pretty much hidden by the new `CoreDb` api.
Revealed are sort of database columns for accounts an storage data,
any of which have an internal state represented by a Keccack hash.
So a `trie` or `MPT` becomes a `column` and a `rootHash` becomes a
column state.
* Aristo: rename backend filed `filters` => `journal`
* Update full sync logging
details:
+ Disable eth handler noise while syncing
+ Log journal depth (if available)
* Fix copyright year
* Fix cruft and unwanted imports
* Update README
* Nimbus-main: replaced `PruneMode` options by `ChainDbMode` options
details:
For the legacy database, this changes the phrase
- `conf.pruneMode == PruneMode.Full` to the expression
+ `conf.chainDbMode == ChainDbMode.Prune`.
* Fix issues moaned about by NIM compiler
* Fix copyright year
* Aristo+RocksDB: Update backend drivers
why:
RocksDB update allows use some of the newly provided methods which
were previously implemented by using the very C backend (for the lack
of NIM methods.)
* Aristo+RocksDB: Simplify drivers wrapper
* Kvt: Update backend drivers and wrappers similar to `Aristo`
* Aristo+Kvm: Use column families for RocksDB
* Aristo+MemoryDB: Code cosmetics
* Aristo: Provide guest column family for export
why:
So `Kvt` can piggyback on `Aristo` so there avoiding to run a second
DBMS system in parallel.
* Kvt: Provide import mechanism for RoksDB guest column family
why:
So `Kvt` can piggyback on `Aristo` so there avoiding to run a second
DBMS system in parallel.
* CoreDb+Aristo: Run persistent `Kvt` DB piggybacked on `Aristo`
why:
Avoiding to run two DBMS systems in parallel.
* Fix copyright year
* Ditto
* Aristo+Kvt: Fix backend `dup()` function in api setup
why:
Backend object is subject to an inheritance cascade which was not
taken care of, before. Only the base object was duplicated.
* Kvt: Simplify DB clone/peers management
* Aristo: Simplify DB clone/peers management
* Aristo: Adjust unit test for working with memory DB only
why:
This currently causes some memory corruption persumably in the
`libc` background layer.
* CoredDb+Kvt: Simplify API for KVT
why:
Simplified storage models (was over engineered) for better performance
and code maintenance.
* CoredDb+Aristo: Simplify API for `Aristo`
why:
Only single database state needed here. Accessing a similar state will
be implemented from outside this module using a context layer. This
gives better performance and improves code maintenance.
* Fix Copyright headers
* CoreDb: Turn off API tracking
why:
CI would ot go through. Was accidentally turned on.
* Update KVT layers abstraction
details:
modelled after Aristo layers
* Simplified KVT database iterators (removed item counters)
why:
Not needed for production functions
* Simplify KVT merge function `layersCc()`
* Simplified Aristo database iterators (removed item counters)
why:
Not needed for production functions
* Update failure condition for hash labels compiler `hashify()`
why:
Node need not be rejected as long as links are on the schedule. In
that case, `redo[]` is to become `wff.base[]` at a later stage.
* Update merging layers and label update functions
why:
+ Merging a stack of layers with `layersCc()` could be simplified
+ Merging layers will optimise the reverse `kMap[]` table maps
`pAmk: label->{vid, ..}` by deleting empty mappings `label->{}` where
they are redundant.
+ Updated `layersPutLabel()` for optimising `pAmk[]` tables
* Fix debug noise in `hashify()` for perfectly normal situation
why:
Was previously considered a fixable error
* Fix test sample file names
why:
The larger test file `goerli68161.txt.gz` is already in the local
archive. So there is no need to use the smaller one from the external
repo.
* Activate `accounts_cache` module from `db/ledger`
why:
A copy of the original `accounts_cache.nim` source to be integrated
into the `Ledger` module wrapper which allows to switch between
different `accounts_cache` implementations unser tha same API.
details:
At a later state, the `db/accounts_cache.nim` wrapper will be
removed so that there is only one access to that module via
`db/ledger/accounts_cache.nim`.
* Fix copyright headers in source code
* Aristo: Provide key-value list signature calculator
detail:
Simple wrappers around `Aristo` core functionality
* Update new API for `CoreDb`
details:
+ Renamed new API functions `contains()` => `hasKey()` or `hasPath()`
which disables the `in` operator on non-boolean `contains()` functions
+ The functions `get()` and `fetch()` always return a not-found error if
there is no item, available. The new functions `getOrEmpty()` and
`mergeOrEmpty()` return an an empty `Blob` if there is no such key
found.
* Rewrite `core_apps.nim` using new API from `CoreDb`
* Use `Aristo` functionality for calculating Merkle signatures
details:
For debugging, the `VerifyAristoForMerkleRootCalc` can be set so
that `Aristo` results will be verified against the legacy versions.
* Provide general interface for Merkle signing key-value tables
details:
Export `Aristo` wrappers
* Activate `CoreDb` tests
why:
Now, API seems to be stable enough for general tests.
* Update `toHex()` usage
why:
Byteutils' `toHex()` is superior to `toSeq.mapIt(it.toHex(2)).join`
* Split `aristo_transcode` => `aristo_serialise` + `aristo_blobify`
why:
+ Different modules for different purposes
+ `aristo_serialise`: RLP encoding/decoding
+ `aristo_blobify`: Aristo database encoding/decoding
* Compacted representation of small nodes' links instead of Keccak hashes
why:
Ethereum MPTs use Keccak hashes as node links if the size of an RLP
encoded node is at least 32 bytes. Otherwise, the RLP encoded node
value is used as a pseudo node link (rather than a hash.) Such a node
is nor stored on key-value database. Rather the RLP encoded node value
is stored instead of a lode link in a parent node instead. Only for
the root hash, the top level node is always referred to by the hash.
This feature needed an abstraction of the `HashKey` object which is now
either a hash or a blob of length at most 31 bytes. This leaves two
ways of representing an empty/void `HashKey` type, either as an empty
blob of zero length, or the hash of an empty blob.
* Update `CoreDb` interface (mainly reducing logger noise)
* Fix copyright years (to make `Lint` happy)
* Rewrite remaining `AristoError` return code into `Result[void,AristoError]`
why:
Better code maintenance
* Update import sections
* Update Aristo DB paths
why:
More systematic so directory can be shared with other DB types
* More cosmetcs
* Update unit tests runners
why:
Proper handling of persistent and mem-only DB. The latter can be
consistently triggered by an empty DB path.
* Set scheduler state as part of the backend descriptor
details:
Moved type definitions `QidLayoutRef` and `QidSchedRef` to
`desc_structural.nim` so that it shares the same folder as
`desc_backend.nim`
* Automatic filter queue table initialisation in backend
details:
Scheduler can be tweaked or completely disabled
* Updated backend unit tests
details:
+ some code clean up/beautification, reads better now
+ disabled persistent filters so that there is no automated filter
management which will be implemented next
* Prettify/update unit tests source code
details:
Mostly replacing the `check()` paradigm by `xCheck()`
* Somewhat simplified backend type management
why:
Backend objects are labelled with a `BackendType` symbol where the
`BackendVoid` label is implicitly assumed for a `nil` backend object
reference.
To make it easier, a `kind()` function is used now applicable to
`nil` references as well.
* Fix DB storage layout for filter objects
why:
Need to store the filter ID with the object
* Implement reverse [] index on fifo
why:
An integer index argument on `[]` retrieves the QueueID (label) of the
fifo item while a QueueID argument on `[]` retrieves the index (so
it is inverse to the former variant).
* Provide iterator over filters as fifo
why:
This iterator goes along the cascased fifo structure (i.e. in
historical order)
* Rename FilterID => QueueID
why:
The current usage does not identify a particular filter but uses it as
storage tag to manage it on the database (to be organised in a set of
FIFOs or queues.)
* Split `aristo_filter` source into sub-files
why:
Make space for filter management API
* Store filter queue IDs in pairs on the backend
why:
Any pair will will describe a FIFO accessed by bottom/top IDs
* Reorg some source file names
why:
The "aristo_" prefix for make local/private files is tedious to
use, so removed.
* Implement filter slot scheduler
details:
Filters will be stored on the database on cascaded FIFOs. When a FIFO
queue is full, some filter items are bundled together and stored on the
next FIFO.
Jacek Sieka
Jordan Hrycaj