nimbus-eth1/fluffy/database/content_db.nim

# Fluffy
# Copyright (c) 2021-2024 Status Research & Development GmbH
# Licensed and distributed under either of
#   * MIT license (license terms in the root directory or at https://opensource.org/licenses/MIT).
#   * Apache v2 license (license terms in the root directory or at https://www.apache.org/licenses/LICENSE-2.0).
# at your option. This file may not be copied, modified, or distributed except according to those terms.

{.push raises: [].}

import
  chronicles,
  metrics,
  stint,
  stew/results,
  eth/db/kvstore,
  eth/db/kvstore_sqlite3,
  ../network/state/state_content,
  ../network/wire/[portal_protocol, portal_protocol_config],
  ./content_db_custom_sql_functions

export kvstore_sqlite3

# This version of content db is the most basic, simple solution where data is
# stored no matter what content type or content network in the same kvstore with
# the content id as key. The content id is derived from the content key, and the
# deriviation is different depending on the content type. As we use content id,
# this part is currently out of the scope / API of the ContentDB.
# In the future it is likely that that either:
# 1. More kvstores are added per network, and thus depending on the network a
# different kvstore needs to be selected.
# 2. Or more kvstores are added per network and per content type, and thus
# content key fields are required to access the data.
# 3. Or databases are created per network (and kvstores pre content type) and
# thus depending on the network the right db needs to be selected.

declareCounter portal_pruning_counter,
  "Number of pruning events which occured during the node's uptime",
  labels = ["protocol_id"]

declareGauge portal_pruning_deleted_elements,
  "Number of elements deleted in the last pruning", labels = ["protocol_id"]

const
  contentDeletionFraction = 0.05 ## 5% of the content will be deleted when the
  ## storage capacity is hit and radius gets adjusted.

type
  RowInfo =
    tuple[contentId: array[32, byte], payloadLength: int64, distance: array[32, byte]]

  ContentDB* = ref object
    backend: SqStoreRef
    kv: KvStoreRef
    manualCheckpoint: bool
    storageCapacity*: uint64
    sizeStmt: SqliteStmt[NoParams, int64]
    unusedSizeStmt: SqliteStmt[NoParams, int64]
    vacuumStmt: SqliteStmt[NoParams, void]
    contentCountStmt: SqliteStmt[NoParams, int64]
    contentSizeStmt: SqliteStmt[NoParams, int64]
    getAllOrderedByDistanceStmt: SqliteStmt[array[32, byte], RowInfo]
    deleteOutOfRadiusStmt: SqliteStmt[(array[32, byte], array[32, byte]), void]
    largestDistanceStmt: SqliteStmt[array[32, byte], array[32, byte]]

  PutResultType* = enum
    ContentStored
    DbPruned

  PutResult* = object
    case kind*: PutResultType
    of ContentStored:
      discard
    of DbPruned:
      distanceOfFurthestElement*: UInt256
      deletedFraction*: float64
      deletedElements*: int64

template expectDb(x: auto): untyped =
  # There's no meaningful error handling implemented for a corrupt database or
  # full disk - this requires manual intervention, so we'll panic for now
  x.expect("working database (disk broken/full?)")

proc new*(
    T: type ContentDB,
    path: string,
    storageCapacity: uint64,
    inMemory = false,
    manualCheckpoint = false,
): ContentDB =
  doAssert(storageCapacity <= uint64(int64.high))

  let db =
    if inMemory:
      SqStoreRef.init("", "fluffy-test", inMemory = true).expect(
        "working database (out of memory?)"
      )
    else:
      SqStoreRef.init(path, "fluffy", manualCheckpoint = false).expectDb()

  db.createCustomFunction("xorDistance", 2, xorDistance).expect(
    "Custom function xorDistance creation OK"
  )

  db.createCustomFunction("isInRadius", 3, isInRadius).expect(
    "Custom function isInRadius creation OK"
  )

  let sizeStmt = db.prepareStmt(
    "SELECT page_count * page_size as size FROM pragma_page_count(), pragma_page_size();",
    NoParams, int64,
  )[]

  let unusedSizeStmt = db.prepareStmt(
    "SELECT freelist_count * page_size as size FROM pragma_freelist_count(), pragma_page_size();",
    NoParams, int64,
  )[]

  let vacuumStmt = db.prepareStmt("VACUUM;", NoParams, void)[]

  let kvStore = kvStore db.openKvStore().expectDb()

  let contentSizeStmt =
    db.prepareStmt("SELECT SUM(length(value)) FROM kvstore", NoParams, int64)[]

  let contentCountStmt =
    db.prepareStmt("SELECT COUNT(key) FROM kvstore;", NoParams, int64)[]

  let getAllOrderedByDistanceStmt = db.prepareStmt(
    "SELECT key, length(value), xorDistance(?, key) as distance FROM kvstore ORDER BY distance DESC",
    array[32, byte],
    RowInfo,
  )[]

  let deleteOutOfRadiusStmt = db.prepareStmt(
    "DELETE FROM kvstore WHERE isInRadius(?, key, ?) == 0",
    (array[32, byte], array[32, byte]),
    void,
  )[]

  let largestDistanceStmt = db.prepareStmt(
    "SELECT max(xorDistance(?, key)) FROM kvstore", array[32, byte], array[32, byte]
  )[]

  ContentDB(
    kv: kvStore,
    backend: db,
    manualCheckpoint: manualCheckpoint,
    storageCapacity: storageCapacity,
    sizeStmt: sizeStmt,
    unusedSizeStmt: unusedSizeStmt,
    vacuumStmt: vacuumStmt,
    contentSizeStmt: contentSizeStmt,
    contentCountStmt: contentCountStmt,
    getAllOrderedByDistanceStmt: getAllOrderedByDistanceStmt,
    deleteOutOfRadiusStmt: deleteOutOfRadiusStmt,
    largestDistanceStmt: largestDistanceStmt,
  )

template disposeSafe(s: untyped): untyped =
  if distinctBase(s) != nil:
    s.dispose()
    s = typeof(s)(nil)

proc close*(db: ContentDB) =
  db.sizeStmt.disposeSafe()
  db.unusedSizeStmt.disposeSafe()
  db.vacuumStmt.disposeSafe()
  db.contentCountStmt.disposeSafe()
  db.contentSizeStmt.disposeSafe()
  db.getAllOrderedByDistanceStmt.disposeSafe()
  db.deleteOutOfRadiusStmt.disposeSafe()
  db.largestDistanceStmt.disposeSafe()
  discard db.kv.close()

## Private KvStoreRef Calls

proc get(kv: KvStoreRef, key: openArray[byte]): Opt[seq[byte]] =
  var res: Opt[seq[byte]]
  proc onData(data: openArray[byte]) =
    res = Opt.some(@data)

  discard kv.get(key, onData).expectDb()

  return res

proc getSszDecoded(kv: KvStoreRef, key: openArray[byte], T: type auto): Opt[T] =
  let res = kv.get(key)
  if res.isSome():
    try:
      Opt.some(SSZ.decode(res.get(), T))
    except SerializationError:
      raiseAssert("Stored data should always be serialized correctly")
  else:
    Opt.none(T)

## Private ContentDB calls

proc get(db: ContentDB, key: openArray[byte]): Opt[seq[byte]] =
  db.kv.get(key)

proc put(db: ContentDB, key, value: openArray[byte]) =
  db.kv.put(key, value).expectDb()

proc contains(db: ContentDB, key: openArray[byte]): bool =
  db.kv.contains(key).expectDb()

proc del(db: ContentDB, key: openArray[byte]) =
  # TODO: Do we want to return the bool here too?
  discard db.kv.del(key).expectDb()

proc getSszDecoded(db: ContentDB, key: openArray[byte], T: type auto): Opt[T] =
  db.kv.getSszDecoded(key, T)

## Public ContentId based ContentDB calls

# TODO: Could also decide to use the ContentKey SSZ bytestring, as this is what
# gets send over the network in requests, but that would be a bigger key. Or the
# same hashing could be done on it here.
# However ContentId itself is already derived through different digests
# depending on the content type, and this ContentId typically needs to be
# checked with the Radius/distance of the node anyhow. So lets see how we end up
# using this mostly in the code.

proc get*(db: ContentDB, key: ContentId): Opt[seq[byte]] =
  # TODO: Here it is unfortunate that ContentId is a uint256 instead of Digest256.
  db.get(key.toBytesBE())

proc put*(db: ContentDB, key: ContentId, value: openArray[byte]) =
  db.put(key.toBytesBE(), value)

proc contains*(db: ContentDB, key: ContentId): bool =
  db.contains(key.toBytesBE())

proc del*(db: ContentDB, key: ContentId) =
  db.del(key.toBytesBE())

proc getSszDecoded*(db: ContentDB, key: ContentId, T: type auto): Opt[T] =
  db.getSszDecoded(key.toBytesBE(), T)

## Public calls to get database size, content size and similar.

proc size*(db: ContentDB): int64 =
  ## Return current size of DB as product of sqlite page_count and page_size:
  ## https://www.sqlite.org/pragma.html#pragma_page_count
  ## https://www.sqlite.org/pragma.html#pragma_page_size
  ## It returns the total size of db on the disk, i.e both data and metadata
  ## used to store content.
  ## It is worth noting that when deleting content, the size may lag behind due
  ## to the way how deleting works in sqlite.
  ## Good description can be found in: https://www.sqlite.org/lang_vacuum.html
  var size: int64 = 0
  discard (
    db.sizeStmt.exec do(res: int64):
      size = res
  ).expectDb()
  return size

proc unusedSize(db: ContentDB): int64 =
  ## Returns the total size of the pages which are unused by the database,
  ## i.e they can be re-used for new content.
  var size: int64 = 0
  discard (
    db.unusedSizeStmt.exec do(res: int64):
      size = res
  ).expectDb()
  return size

proc usedSize*(db: ContentDB): int64 =
  ## Returns the total size of the database (data + metadata) minus the unused
  ## pages.
  db.size() - db.unusedSize()

proc contentSize*(db: ContentDB): int64 =
  ## Returns total size of the content stored in DB.
  var size: int64 = 0
  discard (
    db.contentSizeStmt.exec do(res: int64):
      size = res
  ).expectDb()
  return size

proc contentCount*(db: ContentDB): int64 =
  var count: int64 = 0
  discard (
    db.contentCountStmt.exec do(res: int64):
      count = res
  ).expectDb()
  return count

## Pruning related calls

proc getLargestDistance*(db: ContentDB, localId: UInt256): UInt256 =
  var distanceBytes: array[32, byte]
  discard (
    db.largestDistanceStmt.exec(
      localId.toBytesBE(),
      proc(res: array[32, byte]) =
        distanceBytes = res
      ,
    )
  ).expectDb()

  return UInt256.fromBytesBE(distanceBytes)

func estimateNewRadius(
    currentSize: uint64, storageCapacity: uint64, currentRadius: UInt256
): UInt256 =
  let sizeRatio = currentSize div storageCapacity
  if sizeRatio > 0:
    currentRadius div sizeRatio.stuint(256)
  else:
    currentRadius

func estimateNewRadius*(db: ContentDB, currentRadius: UInt256): UInt256 =
  estimateNewRadius(uint64(db.usedSize()), db.storageCapacity, currentRadius)

proc deleteContentFraction*(
    db: ContentDB, target: UInt256, fraction: float64
): (UInt256, int64, int64, int64) =
  ## Deletes at most `fraction` percent of content from the database.
  ## The content furthest from the provided `target` is deleted first.
  # TODO: The usage of `db.contentSize()` for the deletion calculation versus
  # `db.usedSize()` for the pruning threshold leads sometimes to some unexpected
  # results of how much content gets up deleted.
  doAssert(fraction > 0 and fraction < 1, "Deleted fraction should be > 0 and < 1")

  let totalContentSize = db.contentSize()
  let bytesToDelete = int64(fraction * float64(totalContentSize))
  var deletedElements: int64 = 0

  var ri: RowInfo
  var deletedBytes: int64 = 0
  let targetBytes = target.toBytesBE()
  for e in db.getAllOrderedByDistanceStmt.exec(targetBytes, ri):
    if deletedBytes + ri.payloadLength <= bytesToDelete:
      db.del(ri.contentId)
      deletedBytes = deletedBytes + ri.payloadLength
      inc deletedElements
    else:
      return (
        UInt256.fromBytesBE(ri.distance),
        deletedBytes,
        totalContentSize,
        deletedElements,
      )

proc reclaimSpace*(db: ContentDB): void =
  ## Runs sqlite VACUUM commands which rebuilds the db, repacking it into a
  ## minimal amount of disk space.
  ## Ideal mode of operation is to run it after several deletes.
  ## Another option would be to run 'PRAGMA auto_vacuum = FULL;' statement at
  ## the start of db to leave it up to sqlite to clean up.
  db.vacuumStmt.exec().expectDb()

proc deleteContentOutOfRadius*(db: ContentDB, localId: UInt256, radius: UInt256) =
  ## Deletes all content that falls outside of the given radius range.

  db.deleteOutOfRadiusStmt.exec((localId.toBytesBE(), radius.toBytesBE())).expect(
    "SQL query OK"
  )

proc reclaimAndTruncate*(db: ContentDB) =
  notice "Reclaiming unused pages"
  db.reclaimSpace()
  if db.manualCheckpoint:
    notice "Truncating WAL file"
    db.backend.checkpoint(SqStoreCheckpointKind.truncate)

proc forcePrune*(db: ContentDB, localId: UInt256, radius: UInt256) =
  ## Force prune the database to a statically set radius. This will also run
  ## the reclaimSpace (vacuum) to free unused pages. As side effect this will
  ## cause the pruned database size to double in size on disk (wal file will be
  ## approximately the same size as the db). A truncate checkpoint is done to
  ## clean that up. In order to be able do the truncate checkpoint, the db needs
  ## to be initialized in with `manualCheckpoint` on, else this step will be
  ## skipped.
  notice "Starting the pruning of content"
  db.deleteContentOutOfRadius(localId, radius)
  db.reclaimAndTruncate()
  notice "Finished database pruning"

proc put*(
    db: ContentDB, key: ContentId, value: openArray[byte], target: UInt256
): PutResult =
  db.put(key, value)

  # The used size is used as pruning threshold. This means that the database
  # size will reach the size specified in db.storageCapacity and will stay
  # around that size throughout the node's lifetime, as after content deletion
  # due to pruning, the free pages will be re-used.
  #
  # Note:
  # The `forcePrune` call must be used when database storage capacity is lowered
  # either when setting a lower `storageCapacity` or when lowering a configured
  # static radius.
  # When not using the `forcePrune` functionality, pruning to the required
  # capacity will not be very effictive and free pages will not be returned.
  let dbSize = db.usedSize()

  if dbSize < int64(db.storageCapacity):
    return PutResult(kind: ContentStored)
  else:
    # Note:
    # An approach of a deleting a full fraction is chosen here, in an attempt
    # to not continiously require radius updates, which could have a negative
    # impact on the network. However this should be further investigated, as
    # doing a large fraction deletion could cause a temporary node performance
    # degradation. The `contentDeletionFraction` might need further tuning or
    # one could opt for a much more granular approach using sql statement
    # in the trend of:
    # "SELECT key FROM kvstore ORDER BY xorDistance(?, key) DESC LIMIT 1"
    # Potential adjusting the LIMIT for how many items require deletion.
    let (distanceOfFurthestElement, deletedBytes, totalContentSize, deletedElements) =
      db.deleteContentFraction(target, contentDeletionFraction)

    let deletedFraction = float64(deletedBytes) / float64(totalContentSize)
    info "Deleted content fraction", deletedBytes, deletedElements, deletedFraction

    return PutResult(
      kind: DbPruned,
      distanceOfFurthestElement: distanceOfFurthestElement,
      deletedFraction: deletedFraction,
      deletedElements: deletedElements,
    )

proc adjustRadius(
    p: PortalProtocol, deletedFraction: float64, distanceOfFurthestElement: UInt256
) =
  # Invert fraction as the UInt256 implementation does not support
  # multiplication by float
  let invertedFractionAsInt = int64(1.0 / deletedFraction)
  let scaledRadius = p.dataRadius div u256(invertedFractionAsInt)

  # Choose a larger value to avoid the situation where the
  # `distanceOfFurthestElement is very close to the local id so that the local
  # radius would end up too small to accept any more data to the database.
  # If scaledRadius radius will be larger it will still contain all elements.
  let newRadius = max(scaledRadius, distanceOfFurthestElement)

  info "Database radius adjusted",
    oldRadius = p.dataRadius, newRadius = newRadius, distanceOfFurthestElement

  # Both scaledRadius and distanceOfFurthestElement are smaller than current
  # dataRadius, so the radius will constantly decrease through the node its
  # lifetime.
  p.dataRadius = newRadius

proc createGetHandler*(db: ContentDB): DbGetHandler =
  return (
    proc(contentKey: ByteList, contentId: ContentId): Opt[seq[byte]] =
      let content = db.get(contentId).valueOr:
        return Opt.none(seq[byte])

      ok(content)
  )

proc createStoreHandler*(
    db: ContentDB, cfg: RadiusConfig, p: PortalProtocol
): DbStoreHandler =
  return (
    proc(
        contentKey: ByteList, contentId: ContentId, content: seq[byte]
    ) {.raises: [], gcsafe.} =
      # always re-check that the key is in the node range to make sure only
      # content in range is stored.
      # TODO: current silent assumption is that both ContentDB and PortalProtocol
      # are using the same xor distance function
      if p.inRange(contentId):
        case cfg.kind
        of Dynamic:
          # In case of dynamic radius setting we obey storage limits and adjust
          # radius to store network fraction corresponding to those storage limits.
          let res = db.put(contentId, content, p.localNode.id)
          if res.kind == DbPruned:
            portal_pruning_counter.inc(labelValues = [$p.protocolId])
            portal_pruning_deleted_elements.set(
              res.deletedElements.int64, labelValues = [$p.protocolId]
            )

            if res.deletedFraction > 0.0:
              p.adjustRadius(res.deletedFraction, res.distanceOfFurthestElement)
            else:
              # Note:
              # This can occur when the furthest content is bigger than the fraction
              # size. This is unlikely to happen as it would require either very
              # small storage capacity or a very small `contentDeletionFraction`
              # combined with some big content.
              info "Database pruning attempt resulted in no content deleted"
              return
        of Static:
          # If the config is set statically, radius is not adjusted, and is kept
          # constant thorugh node life time, also database max size is disabled
          # so we will effectivly store fraction of the network
          db.put(contentId, content)
  )