2023-05-30 22:21:15 +01:00
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# nimbus-eth1
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aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
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# Copyright (c) 2023-2025 Status Research & Development GmbH
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2023-05-30 22:21:15 +01:00
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# Licensed under either of
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# * Apache License, version 2.0, ([LICENSE-APACHE](LICENSE-APACHE) or
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# http://www.apache.org/licenses/LICENSE-2.0)
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# * MIT license ([LICENSE-MIT](LICENSE-MIT) or
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# http://opensource.org/licenses/MIT)
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# at your option. This file may not be copied, modified, or distributed
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# except according to those terms.
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{.push raises: [].}
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import
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2024-12-05 13:00:47 +07:00
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std/strformat,
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2024-09-20 07:43:53 +02:00
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chronicles,
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2024-12-20 12:57:15 +01:00
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eth/common/[accounts_rlp, base_rlp, hashes_rlp],
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2023-09-15 16:23:53 +01:00
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results,
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Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
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"."/[aristo_desc, aristo_get, aristo_walk/persistent],
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2024-09-20 07:43:53 +02:00
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./aristo_desc/desc_backend
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type WriteBatch = tuple[writer: PutHdlRef, count: int, depth: int, prefix: uint64]
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# Keep write batch size _around_ 1mb, give or take some overhead - this is a
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# tradeoff between efficiency and memory usage with diminishing returns the
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# larger it is..
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const batchSize = 1024 * 1024 div (sizeof(RootedVertexID) + sizeof(HashKey))
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Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
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proc flush(batch: var WriteBatch, db: AristoDbRef): Result[void, AristoError] =
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if batch.writer != nil:
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?db.backend.putEndFn batch.writer
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batch.writer = nil
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ok()
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Store keys together with node data (#2849)
Currently, computed hash keys are stored in a separate column family
with respect to the MPT data they're generated from - this has several
disadvantages:
* A lot of space is wasted because the lookup key (`RootedVertexID`) is
repeated in both tables - this is 30% of the `AriKey` content!
* rocksdb must maintain in-memory bloom filters and LRU caches for said
keys, doubling its "minimal efficient cache size"
* An extra disk traversal must be made to check for existence of cached
hash key
* Doubles the amount of files on disk due to each column family being
its own set of files
Here, the two CFs are joined such that both key and data is stored in
`AriVtx`. This means:
* we save ~30% disk space on repeated lookup keys
* we save ~2gb of memory overhead that can be used to cache data instead
of indices
* we can skip storing hash keys for MPT leaf nodes - these are trivial
to compute and waste a lot of space - previously they had to present in
the `AriKey` CF to avoid having to look in two tables on the happy path.
* There is a small increase in write amplification because when a hash
value is updated for a branch node, we must write both key and branch
data - previously we would write only the key
* There's a small shift in CPU usage - instead of performing lookups in
the database, hashes for leaf nodes are (re)-computed on the fly
* We can return to slightly smaller on-disk SST files since there's
fewer of them, which should reduce disk traffic a bit
Internally, there are also other advantages:
* when clearing keys, we no longer have to store a zero hash in memory -
instead, we deduce staleness of the cached key from the presence of an
updated VertexRef - this saves ~1gb of mem overhead during import
* hash key cache becomes dedicated to branch keys since leaf keys are no
longer stored in memory, reducing churn
* key computation is a lot faster thanks to the skipped second disk
traversal - a key computation for mainnet can be completed in 11 hours
instead of ~2 days (!) thanks to better cache usage and less read
amplification - with additional improvements to the on-disk format, we
can probably get rid of the initial full traversal method of seeding the
key cache on first start after import
All in all, this PR reduces the size of a mainnet database from 160gb to
110gb and the peak memory footprint during import by ~1-2gb.
2024-11-20 09:56:27 +01:00
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proc putVtx(
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batch: var WriteBatch,
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db: AristoDbRef,
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rvid: RootedVertexID,
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vtx: VertexRef,
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key: HashKey,
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Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
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): Result[void, AristoError] =
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if batch.writer == nil:
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doAssert db.backend != nil, "source data is from the backend"
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batch.writer = ?db.backend.putBegFn()
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Store keys together with node data (#2849)
Currently, computed hash keys are stored in a separate column family
with respect to the MPT data they're generated from - this has several
disadvantages:
* A lot of space is wasted because the lookup key (`RootedVertexID`) is
repeated in both tables - this is 30% of the `AriKey` content!
* rocksdb must maintain in-memory bloom filters and LRU caches for said
keys, doubling its "minimal efficient cache size"
* An extra disk traversal must be made to check for existence of cached
hash key
* Doubles the amount of files on disk due to each column family being
its own set of files
Here, the two CFs are joined such that both key and data is stored in
`AriVtx`. This means:
* we save ~30% disk space on repeated lookup keys
* we save ~2gb of memory overhead that can be used to cache data instead
of indices
* we can skip storing hash keys for MPT leaf nodes - these are trivial
to compute and waste a lot of space - previously they had to present in
the `AriKey` CF to avoid having to look in two tables on the happy path.
* There is a small increase in write amplification because when a hash
value is updated for a branch node, we must write both key and branch
data - previously we would write only the key
* There's a small shift in CPU usage - instead of performing lookups in
the database, hashes for leaf nodes are (re)-computed on the fly
* We can return to slightly smaller on-disk SST files since there's
fewer of them, which should reduce disk traffic a bit
Internally, there are also other advantages:
* when clearing keys, we no longer have to store a zero hash in memory -
instead, we deduce staleness of the cached key from the presence of an
updated VertexRef - this saves ~1gb of mem overhead during import
* hash key cache becomes dedicated to branch keys since leaf keys are no
longer stored in memory, reducing churn
* key computation is a lot faster thanks to the skipped second disk
traversal - a key computation for mainnet can be completed in 11 hours
instead of ~2 days (!) thanks to better cache usage and less read
amplification - with additional improvements to the on-disk format, we
can probably get rid of the initial full traversal method of seeding the
key cache on first start after import
All in all, this PR reduces the size of a mainnet database from 160gb to
110gb and the peak memory footprint during import by ~1-2gb.
2024-11-20 09:56:27 +01:00
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db.backend.putVtxFn(batch.writer, rvid, vtx, key)
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
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batch.count += 1
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ok()
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2024-09-20 07:43:53 +02:00
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func progress(batch: WriteBatch): string =
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# Return an approximation on how much of the keyspace has been covered by
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# looking at the path prefix that we're currently processing
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&"{(float(batch.prefix) / float(uint64.high)) * 100:02.2f}%"
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Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
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func enter(batch: var WriteBatch, nibble: uint8) =
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2024-09-20 07:43:53 +02:00
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batch.depth += 1
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if batch.depth <= 16:
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batch.prefix += uint64(nibble) shl ((16 - batch.depth) * 4)
|
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|
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
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func leave(batch: var WriteBatch, nibble: uint8) =
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2024-09-20 07:43:53 +02:00
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if batch.depth <= 16:
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batch.prefix -= uint64(nibble) shl ((16 - batch.depth) * 4)
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batch.depth -= 1
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2024-07-18 09:13:56 +02:00
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proc putKeyAtLevel(
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
db: AristoTxRef,
|
2024-09-20 07:43:53 +02:00
|
|
|
rvid: RootedVertexID,
|
Store keys together with node data (#2849)
Currently, computed hash keys are stored in a separate column family
with respect to the MPT data they're generated from - this has several
disadvantages:
* A lot of space is wasted because the lookup key (`RootedVertexID`) is
repeated in both tables - this is 30% of the `AriKey` content!
* rocksdb must maintain in-memory bloom filters and LRU caches for said
keys, doubling its "minimal efficient cache size"
* An extra disk traversal must be made to check for existence of cached
hash key
* Doubles the amount of files on disk due to each column family being
its own set of files
Here, the two CFs are joined such that both key and data is stored in
`AriVtx`. This means:
* we save ~30% disk space on repeated lookup keys
* we save ~2gb of memory overhead that can be used to cache data instead
of indices
* we can skip storing hash keys for MPT leaf nodes - these are trivial
to compute and waste a lot of space - previously they had to present in
the `AriKey` CF to avoid having to look in two tables on the happy path.
* There is a small increase in write amplification because when a hash
value is updated for a branch node, we must write both key and branch
data - previously we would write only the key
* There's a small shift in CPU usage - instead of performing lookups in
the database, hashes for leaf nodes are (re)-computed on the fly
* We can return to slightly smaller on-disk SST files since there's
fewer of them, which should reduce disk traffic a bit
Internally, there are also other advantages:
* when clearing keys, we no longer have to store a zero hash in memory -
instead, we deduce staleness of the cached key from the presence of an
updated VertexRef - this saves ~1gb of mem overhead during import
* hash key cache becomes dedicated to branch keys since leaf keys are no
longer stored in memory, reducing churn
* key computation is a lot faster thanks to the skipped second disk
traversal - a key computation for mainnet can be completed in 11 hours
instead of ~2 days (!) thanks to better cache usage and less read
amplification - with additional improvements to the on-disk format, we
can probably get rid of the initial full traversal method of seeding the
key cache on first start after import
All in all, this PR reduces the size of a mainnet database from 160gb to
110gb and the peak memory footprint during import by ~1-2gb.
2024-11-20 09:56:27 +01:00
|
|
|
vtx: VertexRef,
|
2024-09-20 07:43:53 +02:00
|
|
|
key: HashKey,
|
|
|
|
level: int,
|
|
|
|
batch: var WriteBatch,
|
2024-07-18 09:13:56 +02:00
|
|
|
): Result[void, AristoError] =
|
|
|
|
## Store a hash key in the given layer or directly to the underlying database
|
|
|
|
## which helps ensure that memory usage is proportional to the pending change
|
|
|
|
## set (vertex data may have been committed to disk without computing the
|
|
|
|
## corresponding hash!)
|
2024-09-20 07:43:53 +02:00
|
|
|
|
2024-07-18 09:13:56 +02:00
|
|
|
if level == -2:
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
?batch.putVtx(db.db, rvid, vtx, key)
|
2024-09-20 07:43:53 +02:00
|
|
|
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
if batch.count mod batchSize == 0:
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
?batch.flush(db.db)
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
|
|
|
|
if batch.count mod (batchSize * 100) == 0:
|
|
|
|
info "Writing computeKey cache", keys = batch.count, accounts = batch.progress
|
|
|
|
else:
|
|
|
|
debug "Writing computeKey cache", keys = batch.count, accounts = batch.progress
|
2024-07-18 09:13:56 +02:00
|
|
|
else:
|
Store keys together with node data (#2849)
Currently, computed hash keys are stored in a separate column family
with respect to the MPT data they're generated from - this has several
disadvantages:
* A lot of space is wasted because the lookup key (`RootedVertexID`) is
repeated in both tables - this is 30% of the `AriKey` content!
* rocksdb must maintain in-memory bloom filters and LRU caches for said
keys, doubling its "minimal efficient cache size"
* An extra disk traversal must be made to check for existence of cached
hash key
* Doubles the amount of files on disk due to each column family being
its own set of files
Here, the two CFs are joined such that both key and data is stored in
`AriVtx`. This means:
* we save ~30% disk space on repeated lookup keys
* we save ~2gb of memory overhead that can be used to cache data instead
of indices
* we can skip storing hash keys for MPT leaf nodes - these are trivial
to compute and waste a lot of space - previously they had to present in
the `AriKey` CF to avoid having to look in two tables on the happy path.
* There is a small increase in write amplification because when a hash
value is updated for a branch node, we must write both key and branch
data - previously we would write only the key
* There's a small shift in CPU usage - instead of performing lookups in
the database, hashes for leaf nodes are (re)-computed on the fly
* We can return to slightly smaller on-disk SST files since there's
fewer of them, which should reduce disk traffic a bit
Internally, there are also other advantages:
* when clearing keys, we no longer have to store a zero hash in memory -
instead, we deduce staleness of the cached key from the presence of an
updated VertexRef - this saves ~1gb of mem overhead during import
* hash key cache becomes dedicated to branch keys since leaf keys are no
longer stored in memory, reducing churn
* key computation is a lot faster thanks to the skipped second disk
traversal - a key computation for mainnet can be completed in 11 hours
instead of ~2 days (!) thanks to better cache usage and less read
amplification - with additional improvements to the on-disk format, we
can probably get rid of the initial full traversal method of seeding the
key cache on first start after import
All in all, this PR reduces the size of a mainnet database from 160gb to
110gb and the peak memory footprint during import by ~1-2gb.
2024-11-20 09:56:27 +01:00
|
|
|
db.deltaAtLevel(level).sTab[rvid] = vtx
|
2024-07-18 09:13:56 +02:00
|
|
|
db.deltaAtLevel(level).kMap[rvid] = key
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
|
|
|
|
ok()
|
2024-07-18 09:13:56 +02:00
|
|
|
|
|
|
|
func maxLevel(cur, other: int): int =
|
|
|
|
# Compare two levels and return the topmost in the stack, taking into account
|
|
|
|
# the odd reversal of order around the zero point
|
|
|
|
if cur < 0:
|
|
|
|
max(cur, other) # >= 0 is always more topmost than <0
|
|
|
|
elif other < 0:
|
|
|
|
cur
|
|
|
|
else:
|
|
|
|
min(cur, other) # Here the order is reversed and 0 is the top layer
|
|
|
|
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
template encodeLeaf(w: var RlpWriter, pfx: NibblesBuf, leafData: untyped): HashKey =
|
|
|
|
w.startList(2)
|
|
|
|
w.append(pfx.toHexPrefix(isLeaf = true).data())
|
|
|
|
w.append(leafData)
|
|
|
|
w.finish().digestTo(HashKey)
|
|
|
|
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
template encodeBranch(w: var RlpWriter, vtx: VertexRef, subKeyForN: untyped): HashKey =
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
w.startList(17)
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
for (n {.inject.}, subvid {.inject.}) in vtx.allPairs():
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
w.append(subKeyForN)
|
|
|
|
w.append EmptyBlob
|
|
|
|
w.finish().digestTo(HashKey)
|
|
|
|
|
|
|
|
template encodeExt(w: var RlpWriter, pfx: NibblesBuf, branchKey: HashKey): HashKey =
|
|
|
|
w.startList(2)
|
|
|
|
w.append(pfx.toHexPrefix(isLeaf = false).data())
|
|
|
|
w.append(branchKey)
|
|
|
|
w.finish().digestTo(HashKey)
|
|
|
|
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
proc getKey(
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
db: AristoTxRef, rvid: RootedVertexID, skipLayers: static bool
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
): Result[((HashKey, VertexRef), int), AristoError] =
|
|
|
|
ok when skipLayers:
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
(?db.db.getKeyBe(rvid, {GetVtxFlag.PeekCache}), -2)
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
else:
|
|
|
|
?db.getKeyRc(rvid, {})
|
|
|
|
|
2024-12-09 08:16:02 +01:00
|
|
|
template childVid(v: VertexRef): VertexID =
|
|
|
|
# If we have to recurse into a child, where would that recusion start?
|
|
|
|
case v.vType
|
|
|
|
of Leaf:
|
|
|
|
if v.lData.pType == AccountData and v.lData.stoID.isValid:
|
|
|
|
v.lData.stoID.vid
|
|
|
|
else:
|
|
|
|
default(VertexID)
|
|
|
|
of Branch:
|
|
|
|
v.startVid
|
|
|
|
|
2024-07-18 09:13:56 +02:00
|
|
|
proc computeKeyImpl(
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
db: AristoTxRef,
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
rvid: RootedVertexID,
|
2024-09-20 07:43:53 +02:00
|
|
|
batch: var WriteBatch,
|
2024-12-09 08:16:02 +01:00
|
|
|
vtx: VertexRef,
|
|
|
|
level: int,
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
skipLayers: static bool,
|
2024-09-20 07:43:53 +02:00
|
|
|
): Result[(HashKey, int), AristoError] =
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
# The bloom filter available used only when creating the key cache from an
|
|
|
|
# empty state
|
2024-09-20 07:43:53 +02:00
|
|
|
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
# Top-most level of all the verticies this hash computation depends on
|
2024-12-09 08:16:02 +01:00
|
|
|
var level = level
|
2024-06-28 15:03:12 +00:00
|
|
|
|
|
|
|
# TODO this is the same code as when serializing NodeRef, without the NodeRef
|
2024-07-05 01:48:45 +02:00
|
|
|
var writer = initRlpWriter()
|
2024-06-28 15:03:12 +00:00
|
|
|
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
let key =
|
|
|
|
case vtx.vType
|
|
|
|
of Leaf:
|
|
|
|
writer.encodeLeaf(vtx.pfx):
|
|
|
|
case vtx.lData.pType
|
|
|
|
of AccountData:
|
|
|
|
let
|
|
|
|
stoID = vtx.lData.stoID
|
|
|
|
skey =
|
|
|
|
if stoID.isValid:
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
let
|
|
|
|
keyvtxl = ?db.getKey((stoID.vid, stoID.vid), skipLayers)
|
|
|
|
(skey, sl) =
|
|
|
|
if keyvtxl[0][0].isValid:
|
|
|
|
(keyvtxl[0][0], keyvtxl[1])
|
|
|
|
else:
|
|
|
|
?db.computeKeyImpl(
|
2024-12-09 08:16:02 +01:00
|
|
|
(stoID.vid, stoID.vid),
|
|
|
|
batch,
|
|
|
|
keyvtxl[0][1],
|
|
|
|
keyvtxl[1],
|
|
|
|
skipLayers = skipLayers,
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
)
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
level = maxLevel(level, sl)
|
|
|
|
skey
|
|
|
|
else:
|
|
|
|
VOID_HASH_KEY
|
|
|
|
|
|
|
|
rlp.encode Account(
|
|
|
|
nonce: vtx.lData.account.nonce,
|
|
|
|
balance: vtx.lData.account.balance,
|
|
|
|
storageRoot: skey.to(Hash32),
|
|
|
|
codeHash: vtx.lData.account.codeHash,
|
|
|
|
)
|
|
|
|
of StoData:
|
|
|
|
# TODO avoid memory allocation when encoding storage data
|
|
|
|
rlp.encode(vtx.lData.stoData)
|
|
|
|
of Branch:
|
2024-12-09 08:16:02 +01:00
|
|
|
# For branches, we need to load the vertices before recursing into them
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
# to exploit their on-disk order
|
|
|
|
var keyvtxs: array[16, ((HashKey, VertexRef), int)]
|
|
|
|
for n, subvid in vtx.pairs:
|
|
|
|
keyvtxs[n] = ?db.getKey((rvid.root, subvid), skipLayers)
|
|
|
|
|
2024-12-09 08:16:02 +01:00
|
|
|
# Make sure we have keys computed for each hash
|
|
|
|
block keysComputed:
|
|
|
|
while true:
|
|
|
|
# Compute missing keys in the order of the child vid that we have to
|
|
|
|
# recurse into, again exploiting on-disk order - this more than
|
|
|
|
# doubles computeKey speed on a fresh database!
|
|
|
|
var
|
|
|
|
minVid = default(VertexID)
|
|
|
|
minIdx = keyvtxs.len + 1 # index where the minvid can be found
|
|
|
|
n = 0'u8 # number of already-processed keys, for the progress bar
|
|
|
|
|
|
|
|
# The O(n^2) sort/search here is fine given the small size of the list
|
|
|
|
for nibble, keyvtx in keyvtxs.mpairs:
|
|
|
|
let subvid = vtx.bVid(uint8 nibble)
|
|
|
|
if (not subvid.isValid) or keyvtx[0][0].isValid:
|
|
|
|
n += 1 # no need to compute key
|
|
|
|
continue
|
|
|
|
|
|
|
|
let childVid = keyvtx[0][1].childVid
|
|
|
|
if not childVid.isValid:
|
|
|
|
# leaf vertex without storage ID - we can compute the key trivially
|
|
|
|
(keyvtx[0][0], keyvtx[1]) =
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
?db.computeKeyImpl(
|
|
|
|
(rvid.root, subvid),
|
|
|
|
batch,
|
2024-12-09 08:16:02 +01:00
|
|
|
keyvtx[0][1],
|
|
|
|
keyvtx[1],
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
skipLayers = skipLayers,
|
|
|
|
)
|
2024-12-09 08:16:02 +01:00
|
|
|
n += 1
|
|
|
|
continue
|
|
|
|
|
|
|
|
if minIdx == keyvtxs.len + 1 or childVid < minVid:
|
|
|
|
minIdx = nibble
|
|
|
|
minVid = childVid
|
|
|
|
|
|
|
|
if minIdx == keyvtxs.len + 1: # no uncomputed key found!
|
|
|
|
break keysComputed
|
|
|
|
|
|
|
|
batch.enter(n)
|
|
|
|
(keyvtxs[minIdx][0][0], keyvtxs[minIdx][1]) =
|
|
|
|
?db.computeKeyImpl(
|
|
|
|
(rvid.root, vtx.bVid(uint8 minIdx)),
|
|
|
|
batch,
|
|
|
|
keyvtxs[minIdx][0][1],
|
|
|
|
keyvtxs[minIdx][1],
|
|
|
|
skipLayers = skipLayers,
|
|
|
|
)
|
|
|
|
batch.leave(n)
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
|
2024-12-09 08:16:02 +01:00
|
|
|
template writeBranch(w: var RlpWriter): HashKey =
|
|
|
|
w.encodeBranch(vtx):
|
|
|
|
if subvid.isValid:
|
|
|
|
level = maxLevel(level, keyvtxs[n][1])
|
|
|
|
keyvtxs[n][0][0]
|
2024-07-18 09:13:56 +02:00
|
|
|
else:
|
|
|
|
VOID_HASH_KEY
|
2024-06-28 15:03:12 +00:00
|
|
|
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
if vtx.pfx.len > 0: # Extension node
|
|
|
|
writer.encodeExt(vtx.pfx):
|
|
|
|
var bwriter = initRlpWriter()
|
|
|
|
bwriter.writeBranch()
|
|
|
|
else:
|
|
|
|
writer.writeBranch()
|
|
|
|
|
|
|
|
# Cache the hash into the same storage layer as the the top-most value that it
|
2024-07-18 09:13:56 +02:00
|
|
|
# depends on (recursively) - this could be an ephemeral in-memory layer or the
|
|
|
|
# underlying database backend - typically, values closer to the root are more
|
|
|
|
# likely to live in an in-memory layer since any leaf change will lead to the
|
|
|
|
# root key also changing while leaves that have never been hashed will see
|
|
|
|
# their hash being saved directly to the backend.
|
2023-05-30 22:21:15 +01:00
|
|
|
|
Store keys together with node data (#2849)
Currently, computed hash keys are stored in a separate column family
with respect to the MPT data they're generated from - this has several
disadvantages:
* A lot of space is wasted because the lookup key (`RootedVertexID`) is
repeated in both tables - this is 30% of the `AriKey` content!
* rocksdb must maintain in-memory bloom filters and LRU caches for said
keys, doubling its "minimal efficient cache size"
* An extra disk traversal must be made to check for existence of cached
hash key
* Doubles the amount of files on disk due to each column family being
its own set of files
Here, the two CFs are joined such that both key and data is stored in
`AriVtx`. This means:
* we save ~30% disk space on repeated lookup keys
* we save ~2gb of memory overhead that can be used to cache data instead
of indices
* we can skip storing hash keys for MPT leaf nodes - these are trivial
to compute and waste a lot of space - previously they had to present in
the `AriKey` CF to avoid having to look in two tables on the happy path.
* There is a small increase in write amplification because when a hash
value is updated for a branch node, we must write both key and branch
data - previously we would write only the key
* There's a small shift in CPU usage - instead of performing lookups in
the database, hashes for leaf nodes are (re)-computed on the fly
* We can return to slightly smaller on-disk SST files since there's
fewer of them, which should reduce disk traffic a bit
Internally, there are also other advantages:
* when clearing keys, we no longer have to store a zero hash in memory -
instead, we deduce staleness of the cached key from the presence of an
updated VertexRef - this saves ~1gb of mem overhead during import
* hash key cache becomes dedicated to branch keys since leaf keys are no
longer stored in memory, reducing churn
* key computation is a lot faster thanks to the skipped second disk
traversal - a key computation for mainnet can be completed in 11 hours
instead of ~2 days (!) thanks to better cache usage and less read
amplification - with additional improvements to the on-disk format, we
can probably get rid of the initial full traversal method of seeding the
key cache on first start after import
All in all, this PR reduces the size of a mainnet database from 160gb to
110gb and the peak memory footprint during import by ~1-2gb.
2024-11-20 09:56:27 +01:00
|
|
|
if vtx.vType != Leaf:
|
|
|
|
?db.putKeyAtLevel(rvid, vtx, key, level, batch)
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
ok (key, level)
|
2024-02-08 16:32:16 +00:00
|
|
|
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
proc computeKeyImpl(
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
db: AristoTxRef, rvid: RootedVertexID, skipLayers: static bool
|
2024-09-20 07:43:53 +02:00
|
|
|
): Result[HashKey, AristoError] =
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
let (keyvtx, level) =
|
|
|
|
when skipLayers:
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
(?db.db.getKeyBe(rvid, {GetVtxFlag.PeekCache}), -2)
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
else:
|
|
|
|
?db.getKeyRc(rvid, {})
|
|
|
|
|
|
|
|
if keyvtx[0].isValid:
|
|
|
|
return ok(keyvtx[0])
|
|
|
|
|
2024-09-20 07:43:53 +02:00
|
|
|
var batch: WriteBatch
|
2024-12-09 08:16:02 +01:00
|
|
|
let res = computeKeyImpl(db, rvid, batch, keyvtx[1], level, skipLayers = skipLayers)
|
2024-09-20 07:43:53 +02:00
|
|
|
if res.isOk:
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
?batch.flush(db.db)
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
|
|
|
|
if batch.count > 0:
|
2024-09-20 07:43:53 +02:00
|
|
|
if batch.count >= batchSize * 100:
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
info "Wrote computeKey cache", keys = batch.count, accounts = "100.00%"
|
2024-09-20 07:43:53 +02:00
|
|
|
else:
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
debug "Wrote computeKey cache", keys = batch.count, accounts = "100.00%"
|
|
|
|
|
2024-09-20 07:43:53 +02:00
|
|
|
ok (?res)[0]
|
2023-05-30 22:21:15 +01:00
|
|
|
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
proc computeKey*(
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
db: AristoTxRef, # Database, top layer
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
rvid: RootedVertexID, # Vertex to convert
|
|
|
|
): Result[HashKey, AristoError] =
|
|
|
|
## Compute the key for an arbitrary vertex ID. If successful, the length of
|
|
|
|
## the resulting key might be smaller than 32. If it is used as a root vertex
|
|
|
|
## state/hash, it must be converted to a `Hash32` (using (`.to(Hash32)`) as
|
|
|
|
## in `db.computeKey(rvid).value.to(Hash32)` which always results in a
|
|
|
|
## 32 byte value.
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
computeKeyImpl(db, rvid, skipLayers = false)
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
|
aristo: fork support via layers/txframes (#2960)
* aristo: fork support via layers/txframes
This change reorganises how the database is accessed: instead holding a
"current frame" in the database object, a dag of frames is created based
on the "base frame" held in `AristoDbRef` and all database access
happens through this frame, which can be thought of as a consistent
point-in-time snapshot of the database based on a particular fork of the
chain.
In the code, "frame", "transaction" and "layer" is used to denote more
or less the same thing: a dag of stacked changes backed by the on-disk
database.
Although this is not a requirement, in practice each frame holds the
change set of a single block - as such, the frame and its ancestors
leading up to the on-disk state represents the state of the database
after that block has been applied.
"committing" means merging the changes to its parent frame so that the
difference between them is lost and only the cumulative changes remain -
this facility enables frames to be combined arbitrarily wherever they
are in the dag.
In particular, it becomes possible to consolidate a set of changes near
the base of the dag and commit those to disk without having to re-do the
in-memory frames built on top of them - this is useful for "flattening"
a set of changes during a base update and sending those to storage
without having to perform a block replay on top.
Looking at abstractions, a side effect of this change is that the KVT
and Aristo are brought closer together by considering them to be part of
the "same" atomic transaction set - the way the code gets organised,
applying a block and saving it to the kvt happens in the same "logical"
frame - therefore, discarding the frame discards both the aristo and kvt
changes at the same time - likewise, they are persisted to disk together
- this makes reasoning about the database somewhat easier but has the
downside of increased memory usage, something that perhaps will need
addressing in the future.
Because the code reasons more strictly about frames and the state of the
persisted database, it also makes it more visible where ForkedChain
should be used and where it is still missing - in particular, frames
represent a single branch of history while forkedchain manages multiple
parallel forks - user-facing services such as the RPC should use the
latter, ie until it has been finalized, a getBlock request should
consider all forks and not just the blocks in the canonical head branch.
Another advantage of this approach is that `AristoDbRef` conceptually
becomes more simple - removing its tracking of the "current" transaction
stack simplifies reasoning about what can go wrong since this state now
has to be passed around in the form of `AristoTxRef` - as such, many of
the tests and facilities in the code that were dealing with "stack
inconsistency" are now structurally prevented from happening. The test
suite will need significant refactoring after this change.
Once this change has been merged, there are several follow-ups to do:
* there's no mechanism for keeping frames up to date as they get
committed or rolled back - TODO
* naming is confused - many names for the same thing for legacy reason
* forkedchain support is still missing in lots of code
* clean up redundant logic based on previous designs - in particular the
debug and introspection code no longer makes sense
* the way change sets are stored will probably need revisiting - because
it's a stack of changes where each frame must be interrogated to find an
on-disk value, with a base distance of 128 we'll at minimum have to
perform 128 frame lookups for *every* database interaction - regardless,
the "dag-like" nature will stay
* dispose and commit are poorly defined and perhaps redundant - in
theory, one could simply let the GC collect abandoned frames etc, though
it's likely an explicit mechanism will remain useful, so they stay for
now
More about the changes:
* `AristoDbRef` gains a `txRef` field (todo: rename) that "more or less"
corresponds to the old `balancer` field
* `AristoDbRef.stack` is gone - instead, there's a chain of
`AristoTxRef` objects that hold their respective "layer" which has the
actual changes
* No more reasoning about "top" and "stack" - instead, each
`AristoTxRef` can be a "head" that "more or less" corresponds to the old
single-history `top` notion and its stack
* `level` still represents "distance to base" - it's computed from the
parent chain instead of being stored
* one has to be careful not to use frames where forkedchain was intended
- layers are only for a single branch of history!
* fix layer vtop after rollback
* engine fix
* Fix test_txpool
* Fix test_rpc
* Fix copyright year
* fix simulator
* Fix copyright year
* Fix copyright year
* Fix tracer
* Fix infinite recursion bug
* Remove aristo and kvt empty files
* Fic copyright year
* Fix fc chain_kvt
* ForkedChain refactoring
* Fix merge master conflict
* Fix copyright year
* Reparent txFrame
* Fix test
* Fix txFrame reparent again
* Cleanup and fix test
* UpdateBase bugfix and fix test
* Fixe newPayload bug discovered by hive
* Fix engine api fcu
* Clean up call template, chain_kvt, andn txguid
* Fix copyright year
* work around base block loading issue
* Add test
* Fix updateHead bug
* Fix updateBase bug
* Change func commitBase to proc commitBase
* Touch up and fix debug mode crash
---------
Co-authored-by: jangko <jangko128@gmail.com>
2025-02-06 08:04:50 +01:00
|
|
|
proc computeKeys*(db: AristoTxRef, root: VertexID): Result[void, AristoError] =
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
## Ensure that key cache is topped up with the latest state root
|
|
|
|
discard db.computeKeyImpl((root, root), skipLayers = true)
|
2024-12-09 08:16:02 +01:00
|
|
|
|
Pre-allocate vids for branches (#2882)
Each branch node may have up to 16 sub-items - currently, these are
given VertexID based when they are first needed leading to a
mostly-random order of vertexid for each subitem.
Here, we pre-allocate all 16 vertex ids such that when a branch subitem
is filled, it already has a vertexid waiting for it. This brings several
important benefits:
* subitems are sorted and "close" in their id sequencing - this means
that when rocksdb stores them, they are likely to end up in the same
data block thus improving read efficiency
* because the ids are consequtive, we can store just the starting id and
a bitmap representing which subitems are in use - this reduces disk
space usage for branches allowing more of them fit into a single disk
read, further improving disk read and caching performance - disk usage
at block 18M is down from 84 to 78gb!
* the in-memory footprint of VertexRef reduced allowing more instances
to fit into caches and less memory to be used overall.
Because of the increased locality of reference, it turns out that we no
longer need to iterate over the entire database to efficiently generate
the hash key database because the normal computation is now faster -
this significantly benefits "live" chain processing as well where each
dirtied key must be accompanied by a read of all branch subitems next to
it - most of the performance benefit in this branch comes from this
locality-of-reference improvement.
On a sample resync, there's already ~20% improvement with later blocks
seeing increasing benefit (because the trie is deeper in later blocks
leading to more benefit from branch read perf improvements)
```
blocks: 18729664, baseline: 190h43m49s, contender: 153h59m0s
Time (total): -36h44m48s, -19.27%
```
Note: clients need to be resynced as the PR changes the on-disk format
R.I.P. little bloom filter - your life in the repo was short but
valuable
2024-12-04 11:42:04 +01:00
|
|
|
ok()
|
Speed up initial MPT root computation after import (#2788)
When `nimbus import` runs, we end up with a database without MPT roots
leading to long startup times the first time one is needed.
Computing the state root is slow because the on-disk order based on
VertexID sorting does not match the trie traversal order and therefore
makes lookups inefficent.
Here we introduce a helper that speeds up this computation by traversing
the trie in on-disk order and computing the trie hashes bottom up
instead - even though this leads to some redundant reads of nodes that
we cannot yet compute, it's still a net win as leaves and "bottom"
branches make up the majority of the database.
This PR also addresses a few other sources of inefficiency largely due
to the separation of AriKey and AriVtx into their own column families.
Each column family is its own LSM tree that produces hundreds of SST
filtes - with a limit of 512 open files, rocksdb must keep closing and
opening files which leads to expensive metadata reads during random
access.
When rocksdb makes a lookup, it has to read several layers of files for
each lookup. Ribbon filters to skip over files that don't have the
requested data but when these filters are not in memory, reading them is
slow - this happens in two cases: when opening a file and when the
filter has been evicted from the LRU cache. Addressing the open file
limit solves one source of inefficiency, but we must also increase the
block cache size to deal with this problem.
* rocksdb.max_open_files increased to 2048
* per-file size limits increased so that fewer files are created
* WAL size increased to avoid partial flushes which lead to small files
* rocksdb block cache increased
All these increases of course lead to increased memory usage, but at
least performance is acceptable - in the future, we'll need to explore
options such as joining AriVtx and AriKey and/or reducing the row count
(by grouping branch layers under a single vertexid).
With this PR, the mainnet state root can be computed in ~8 hours (down
from 2-3 days) - not great, but still better.
Further, we write all keys to the database, also those that are less
than 32 bytes - because the mpt path is part of the input, it is very
rare that we actually hit a key like this (about 200k such entries on
mainnet), so the code complexity is not worth the benefit really, in the
current database layout / design.
2024-10-27 12:08:37 +01:00
|
|
|
|
2023-05-30 22:21:15 +01:00
|
|
|
# ------------------------------------------------------------------------------
|
|
|
|
# End
|
|
|
|
# ------------------------------------------------------------------------------
|