mirror of https://github.com/status-im/nim-eth.git
kvstore fixes (#350)
Storing large blobs in a "WITHOUT ROWID" table turns out to be extremely slow when the tree must be rebalanced. * Split out keystore capability into separate interface, making each keystore a separate instance * Disable "WITHOUT ROWID" optimization by default * Implement prefix lookup that allows iterating over all values with a certain prefix in their key
This commit is contained in:
parent
ea8530f6a0
commit
1995afb87e
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@ -26,9 +26,11 @@ type
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KvResult*[T] = Result[T, string]
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DataProc* = proc(val: openArray[byte]) {.gcsafe, raises: [Defect].}
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KeyValueProc* = proc(key, val: openArray[byte]) {.gcsafe, raises: [Defect].}
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PutProc = proc (db: RootRef, key, val: openArray[byte]): KvResult[void] {.nimcall, gcsafe, raises: [Defect].}
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GetProc = proc (db: RootRef, key: openArray[byte], onData: DataProc): KvResult[bool] {.nimcall, gcsafe, raises: [Defect].}
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FindProc = proc (db: RootRef, prefix: openArray[byte], onFind: KeyValueProc): KvResult[int] {.nimcall, gcsafe, raises: [Defect].}
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DelProc = proc (db: RootRef, key: openArray[byte]): KvResult[void] {.nimcall, gcsafe, raises: [Defect].}
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ContainsProc = proc (db: RootRef, key: openArray[byte]): KvResult[bool] {.nimcall, gcsafe, raises: [Defect].}
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CloseProc = proc (db: RootRef): KvResult[void] {.nimcall, gcsafe, raises: [Defect].}
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@ -38,6 +40,7 @@ type
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obj: RootRef
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putProc: PutProc
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getProc: GetProc
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findProc: FindProc
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delProc: DelProc
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containsProc: ContainsProc
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closeProc: CloseProc
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@ -55,6 +58,16 @@ template get*(dbParam: KvStoreRef, key: openArray[byte], onData: untyped): KvRes
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let db = dbParam
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db.getProc(db.obj, key, onData)
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template find*(
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dbParam: KvStoreRef, prefix: openArray[byte], onFind: untyped): KvResult[int] =
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## Perform a prefix find, returning all data starting with the given prefix.
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## An empty prefix returns all rows in the store.
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## The data is valid for the duration of the callback.
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## ``onFind``: ``proc(key, value: openArray[byte])``
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## returns the number of rows found
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let db = dbParam
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db.findProc(db.obj, prefix, onFind)
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template del*(dbParam: KvStoreRef, key: openArray[byte]): KvResult[void] =
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## Remove value at ``key`` from store - do nothing if the value is not present
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let db = dbParam
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@ -78,6 +91,10 @@ proc getImpl[T](db: RootRef, key: openArray[byte], onData: DataProc): KvResult[b
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mixin get
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get(T(db), key, onData)
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proc findImpl[T](db: RootRef, key: openArray[byte], onFind: KeyValueProc): KvResult[int] =
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mixin get
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find(T(db), key, onFind)
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proc delImpl[T](db: RootRef, key: openArray[byte]): KvResult[void] =
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mixin del
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del(T(db), key)
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@ -97,6 +114,7 @@ func kvStore*[T: RootRef](x: T): KvStoreRef =
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obj: x,
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putProc: putImpl[T],
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getProc: getImpl[T],
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findProc: findImpl[T],
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delProc: delImpl[T],
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containsProc: containsImpl[T],
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closeProc: closeImpl[T]
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@ -109,6 +127,18 @@ proc get*(db: MemStoreRef, key: openArray[byte], onData: DataProc): KvResult[boo
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ok(false)
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proc find*(
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db: MemStoreRef, prefix: openArray[byte],
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onFind: KeyValueProc): KvResult[int] =
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var total = 0
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# Should use lower/upper bounds instead
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for k, v in db.records:
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if k.len() >= prefix.len and k.toOpenArray(0, prefix.len() - 1) == prefix:
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onFind(k, v)
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total += 1
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ok(total)
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proc del*(db: MemStoreRef, key: openArray[byte]): KvResult[void] =
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db.records.del(@key)
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ok()
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@ -16,6 +16,9 @@ type
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proc get*(db: RocksStoreRef, key: openarray[byte], onData: kvstore.DataProc): KvResult[bool] =
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db.store.get(key, onData)
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proc find*(db: RocksStoreRef, prefix: openarray[byte], onFind: kvstore.KeyValueProc): KvResult[int] =
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raiseAssert "Unimplemented"
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proc put*(db: RocksStoreRef, key, value: openarray[byte]): KvResult[void] =
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db.store.put(key, value)
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@ -3,7 +3,7 @@
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{.push raises: [Defect].}
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import
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std/[os, strformat],
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std/[os, options, strformat],
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sqlite3_abi,
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./kvstore
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@ -24,17 +24,23 @@ type
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NoParams* = tuple # this is the empty tuple
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ResultHandler*[T] = proc(val: T) {.gcsafe, raises: [Defect].}
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KeySpaceStatements = object
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getStmt, putStmt, delStmt, containsStmt: RawStmtPtr
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SqStoreRef* = ref object of RootObj
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SqStoreRef* = ref object
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# Handle for a single database - from here, keyspaces and statements
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# can be created
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env: Sqlite
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keyspaces: seq[KeySpaceStatements]
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managedStmts: seq[RawStmtPtr]
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SqStoreCheckpointKind* {.pure.} = enum
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passive, full, restart, truncate
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SqKeyspace* = object of RootObj
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# A Keyspace is a single key-value table - it is generally efficient to
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# create separate keyspaces for each type of data stored
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getStmt, putStmt, delStmt, containsStmt,
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findStmt0, findStmt1, findStmt2: RawStmtPtr
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SqKeyspaceRef* = ref SqKeyspace
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template dispose(db: Sqlite) =
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discard sqlite3_close(db)
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@ -72,7 +78,7 @@ proc prepareStmt*(db: SqStoreRef,
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ok SqliteStmt[Params, Res](s)
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proc bindParam(s: RawStmtPtr, n: int, val: auto): cint =
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when val is openarray[byte]|seq[byte]:
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when val is openArray[byte]|seq[byte]:
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if val.len > 0:
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sqlite3_bind_blob(s, n.cint, unsafeAddr val[0], val.len.cint, nil)
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else:
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@ -80,7 +86,7 @@ proc bindParam(s: RawStmtPtr, n: int, val: auto): cint =
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elif val is array:
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when val.items.typeof is byte:
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# Prior to Nim 1.4 and view types array[N, byte] in tuples
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# don't match with openarray[byte]
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# don't match with openArray[byte]
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if val.len > 0:
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sqlite3_bind_blob(s, n.cint, unsafeAddr val[0], val.len.cint, nil)
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else:
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@ -126,7 +132,7 @@ template readResult(s: RawStmtPtr, column: cint, T: type): auto =
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sqlite3_column_int64(s, column)
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elif T is int:
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{.fatal: "Please use specify either int32 or int64 precisely".}
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elif T is openarray[byte]:
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elif T is openArray[byte]:
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let
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p = cast[ptr UncheckedArray[byte]](sqlite3_column_blob(s, column))
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l = sqlite3_column_bytes(s, column)
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@ -209,11 +215,11 @@ proc exec*[Params: tuple](db: SqStoreRef,
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template exec*(db: SqStoreRef, stmt: string): KvResult[void] =
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exec(db, stmt, ())
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proc getImpl(db: SqStoreRef,
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keyspace: int,
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key: openarray[byte],
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proc get*(db: SqKeyspaceRef,
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key: openArray[byte],
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onData: DataProc): KvResult[bool] =
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let getStmt = db.keyspaces[keyspace].getStmt
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if db.getStmt == nil: return err("sqlite: database closed")
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let getStmt = db.getStmt
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checkErr bindParam(getStmt, 1, key)
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let
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res
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proc get*(db: SqStoreRef, key: openarray[byte], onData: DataProc): KvResult[bool] =
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getImpl(db, 0, key, onData)
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func nextPrefix(prefix: openArray[byte], next: var seq[byte]): bool =
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# Return a seq that is greater than all strings starting with `prefix` when
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# doing a lexicographical compare - we're looking for the string that
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# increments the last byte by 1, removing any bytes from the back that
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# cannot be incremented (0xff)
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template get*(db: SqStoreRef, keyspace: int, key: openarray[byte], onData: DataProc): KvResult[bool] =
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getImpl(db, keyspace, key, onData)
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for i in 0..<prefix.len():
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if prefix[^(i+1)] == high(byte):
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if i == 0:
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return false
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else:
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next = prefix[0..<i]
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next[^1] += 1'u8
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return true
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proc putImpl(db: SqStoreRef, keyspace: int, key, value: openarray[byte]): KvResult[void] =
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let putStmt = db.keyspaces[keyspace].putStmt
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false # Empty
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proc find*(
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db: SqKeyspaceRef,
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prefix: openArray[byte],
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onFind: KeyValueProc): KvResult[int] =
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var next: seq[byte] # extended lifetime of bound param
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let findStmt =
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if prefix.len == 0:
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db.findStmt0 # all rows
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else:
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if not nextPrefix(prefix, next):
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# For example when looking for the prefix [byte 255], there are no
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# prefixes that lexicographically are greater, thus we use the
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# query that only does the >= comparison
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checkErr bindParam(db.findStmt1, 1, prefix)
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db.findStmt1
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else:
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checkErr bindParam(db.findStmt2, 1, prefix)
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checkErr bindParam(db.findStmt2, 2, next)
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db.findStmt2
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if findStmt == nil: return err("sqlite: database closed")
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var
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total = 0
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while true:
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let
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v = sqlite3_step(findStmt)
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case v
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of SQLITE_ROW:
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let
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kp = cast[ptr UncheckedArray[byte]](sqlite3_column_blob(findStmt, 0))
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kl = sqlite3_column_bytes(findStmt, 0)
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vp = cast[ptr UncheckedArray[byte]](sqlite3_column_blob(findStmt, 1))
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vl = sqlite3_column_bytes(findStmt, 1)
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onFind(kp.toOpenArray(0, kl - 1), vp.toOpenArray(0, vl - 1))
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total += 1
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of SQLITE_DONE:
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break
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else:
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# release implicit transaction (could use a defer, but it's slow)
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discard sqlite3_reset(findStmt) # same return information as step
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discard sqlite3_clear_bindings(findStmt) # no errors possible
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return err($sqlite3_errstr(v))
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# release implicit transaction
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discard sqlite3_reset(findStmt) # same return information as step
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discard sqlite3_clear_bindings(findStmt) # no errors possible
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ok(total)
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proc put*(db: SqKeyspaceRef, key, value: openArray[byte]): KvResult[void] =
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let putStmt = db.putStmt
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if putStmt == nil: return err("sqlite: database closed")
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checkErr bindParam(putStmt, 1, key)
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checkErr bindParam(putStmt, 2, value)
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@ -260,14 +328,9 @@ proc putImpl(db: SqStoreRef, keyspace: int, key, value: openarray[byte]): KvResu
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res
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proc put*(db: SqStoreRef, key, value: openarray[byte]): KvResult[void] =
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putImpl(db, 0, key, value)
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template put*(db: SqStoreRef, keyspace: int, key, value: openarray[byte]): KvResult[void] =
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putImpl(db, keyspace, key, value)
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proc containsImpl(db: SqStoreRef, keyspace: int, key: openarray[byte]): KvResult[bool] =
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let containsStmt = db.keyspaces[keyspace].containsStmt
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proc contains*(db: SqKeyspaceRef, key: openArray[byte]): KvResult[bool] =
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let containsStmt = db.containsStmt
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if containsStmt == nil: return err("sqlite: database closed")
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checkErr bindParam(containsStmt, 1, key)
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let
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@ -283,14 +346,9 @@ proc containsImpl(db: SqStoreRef, keyspace: int, key: openarray[byte]): KvResult
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res
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proc contains*(db: SqStoreRef, key: openarray[byte]): KvResult[bool] =
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containsImpl(db, 0, key)
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template contains*(db: SqStoreRef, keyspace: int, key: openarray[byte]): KvResult[bool] =
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containsImpl(db, keyspace, key)
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proc delImpl(db: SqStoreRef, keyspace: int, key: openarray[byte]): KvResult[void] =
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let delStmt = db.keyspaces[keyspace].delStmt
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proc del*(db: SqKeyspaceRef, key: openArray[byte]): KvResult[void] =
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let delStmt = db.delStmt
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if delStmt == nil: return err("sqlite: database closed")
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checkErr bindParam(delStmt, 1, key)
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let res =
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@ -305,23 +363,26 @@ proc delImpl(db: SqStoreRef, keyspace: int, key: openarray[byte]): KvResult[void
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res
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proc del*(db: SqStoreRef, key: openarray[byte]): KvResult[void] =
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delImpl(db, 0, key)
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proc close*(db: var SqKeyspace) =
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# Calling with null stmt is harmless
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discard sqlite3_finalize(db.putStmt)
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discard sqlite3_finalize(db.getStmt)
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discard sqlite3_finalize(db.delStmt)
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discard sqlite3_finalize(db.containsStmt)
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discard sqlite3_finalize(db.findStmt0)
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discard sqlite3_finalize(db.findStmt1)
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discard sqlite3_finalize(db.findStmt2)
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db = SqKeyspace()
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template del*(db: SqStoreRef, keyspace: int, key: openarray[byte]): KvResult[void] =
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delImpl(db, keyspace, key)
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proc close*(db: SqKeyspaceRef) =
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close(db[])
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proc close*(db: SqStoreRef) =
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for keyspace in db.keyspaces:
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discard sqlite3_finalize(keyspace.putStmt)
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discard sqlite3_finalize(keyspace.getStmt)
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discard sqlite3_finalize(keyspace.delStmt)
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discard sqlite3_finalize(keyspace.containsStmt)
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for stmt in db.managedStmts:
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discard sqlite3_finalize(stmt)
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discard sqlite3_close(db.env)
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# Lazy-v2-close allows closing the keyspaces in any order
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discard sqlite3_close_v2(db.env)
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db[] = SqStoreRef()[]
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@ -333,6 +394,32 @@ proc checkpoint*(db: SqStoreRef, kind = SqStoreCheckpointKind.passive) =
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of SqStoreCheckpointKind.truncate: SQLITE_CHECKPOINT_TRUNCATE
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discard sqlite3_wal_checkpoint_v2(db.env, nil, mode, nil, nil)
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template prepare(env: ptr sqlite3, q: string): ptr sqlite3_stmt =
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block:
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var s: ptr sqlite3_stmt
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checkErr sqlite3_prepare_v2(env, q, q.len.cint, addr s, nil):
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discard
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s
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template prepare(env: ptr sqlite3, q: string, cleanup: untyped): ptr sqlite3_stmt =
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block:
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var s: ptr sqlite3_stmt
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checkErr sqlite3_prepare_v2(env, q, q.len.cint, addr s, nil)
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s
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template checkExec(s: ptr sqlite3_stmt) =
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if (let x = sqlite3_step(s); x != SQLITE_DONE):
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discard sqlite3_finalize(s)
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return err($sqlite3_errstr(x))
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if (let x = sqlite3_finalize(s); x != SQLITE_OK):
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return err($sqlite3_errstr(x))
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template checkExec(env: ptr sqlite3, q: string) =
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block:
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let s = prepare(env, q): discard
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checkExec(s)
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proc isClosed*(db: SqStoreRef): bool =
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db.env != nil
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@ -342,8 +429,7 @@ proc init*(
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name: string,
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readOnly = false,
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inMemory = false,
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manualCheckpoint = false,
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keyspaces: openarray[string] = ["kvstore"]): KvResult[T] =
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manualCheckpoint = false): KvResult[T] =
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var env: AutoDisposed[ptr sqlite3]
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defer: disposeIfUnreleased(env)
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|
@ -359,28 +445,10 @@ proc init*(
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try:
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createDir(basePath)
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except OSError, IOError:
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return err("`sqlite: cannot create database directory")
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return err("sqlite: cannot create database directory")
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checkErr sqlite3_open_v2(name, addr env.val, flags.cint, nil)
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template prepare(q: string, cleanup: untyped): ptr sqlite3_stmt =
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var s: ptr sqlite3_stmt
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checkErr sqlite3_prepare_v2(env.val, q, q.len.cint, addr s, nil):
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cleanup
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s
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template checkExec(s: ptr sqlite3_stmt) =
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if (let x = sqlite3_step(s); x != SQLITE_DONE):
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discard sqlite3_finalize(s)
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return err($sqlite3_errstr(x))
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if (let x = sqlite3_finalize(s); x != SQLITE_OK):
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return err($sqlite3_errstr(x))
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template checkExec(q: string) =
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let s = prepare(q): discard
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checkExec(s)
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template checkWalPragmaResult(journalModePragma: ptr sqlite3_stmt) =
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if (let x = sqlite3_step(journalModePragma); x != SQLITE_ROW):
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discard sqlite3_finalize(journalModePragma)
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|
@ -396,12 +464,11 @@ proc init*(
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return err("Invalid pragma result: " & $x)
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# TODO: check current version and implement schema versioning
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checkExec "PRAGMA user_version = 2;"
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checkExec env.val, "PRAGMA user_version = 3;"
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let journalModePragma = prepare("PRAGMA journal_mode = WAL;"): discard
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let journalModePragma = prepare(env.val, "PRAGMA journal_mode = WAL;")
|
||||
checkWalPragmaResult(journalModePragma)
|
||||
checkExec(journalModePragma)
|
||||
|
||||
checkExec journalModePragma
|
||||
|
||||
if manualCheckpoint:
|
||||
checkErr sqlite3_wal_autocheckpoint(env.val, 0)
|
||||
|
@ -409,55 +476,49 @@ proc init*(
|
|||
# this is safe in WAL mode leaving us with a consistent database at all
|
||||
# times, though potentially losing any data written between checkpoints.
|
||||
# http://www3.sqlite.org/wal.html#performance_considerations
|
||||
checkExec("PRAGMA synchronous = NORMAL;")
|
||||
|
||||
var keyspaceStatements = newSeq[KeySpaceStatements]()
|
||||
for keyspace in keyspaces:
|
||||
checkExec """
|
||||
CREATE TABLE IF NOT EXISTS """ & keyspace & """ (
|
||||
key BLOB PRIMARY KEY,
|
||||
value BLOB
|
||||
);
|
||||
"""
|
||||
|
||||
let
|
||||
getStmt = prepare("SELECT value FROM " & keyspace & " WHERE key = ?;"):
|
||||
discard
|
||||
putStmt = prepare("INSERT OR REPLACE INTO " & keyspace & "(key, value) VALUES (?, ?);"):
|
||||
discard sqlite3_finalize(getStmt)
|
||||
delStmt = prepare("DELETE FROM " & keyspace & " WHERE key = ?;"):
|
||||
discard sqlite3_finalize(getStmt)
|
||||
discard sqlite3_finalize(putStmt)
|
||||
containsStmt = prepare("SELECT 1 FROM " & keyspace & " WHERE key = ?;"):
|
||||
discard sqlite3_finalize(getStmt)
|
||||
discard sqlite3_finalize(putStmt)
|
||||
discard sqlite3_finalize(delStmt)
|
||||
|
||||
keyspaceStatements.add KeySpaceStatements(
|
||||
getStmt: getStmt,
|
||||
putStmt: putStmt,
|
||||
delStmt: delStmt,
|
||||
containsStmt: containsStmt)
|
||||
checkExec env.val, "PRAGMA synchronous = NORMAL;"
|
||||
|
||||
ok(SqStoreRef(
|
||||
env: env.release,
|
||||
keyspaces: keyspaceStatements
|
||||
))
|
||||
|
||||
proc init*(
|
||||
T: type SqStoreRef,
|
||||
basePath: string,
|
||||
name: string,
|
||||
Keyspaces: type[enum],
|
||||
readOnly = false,
|
||||
inMemory = false,
|
||||
manualCheckpoint = false): KvResult[T] =
|
||||
proc openKvStore*(db: SqStoreRef, name = "kvstore", withoutRowid = false): KvResult[SqKeyspaceRef] =
|
||||
## Open a new Key-Value store in the SQLite database
|
||||
##
|
||||
## withoutRowid: Create the table without rowid - this is more efficient when
|
||||
## rows are small (<200 bytes) but very inefficient with larger
|
||||
## rows (the row being the sum of key and value) - see
|
||||
## https://www.sqlite.org/withoutrowid.html
|
||||
##
|
||||
let
|
||||
createSql = """
|
||||
CREATE TABLE IF NOT EXISTS """ & name & """ (
|
||||
key BLOB PRIMARY KEY,
|
||||
value BLOB
|
||||
)"""
|
||||
|
||||
var keyspaceNames = newSeq[string]()
|
||||
for keyspace in Keyspaces:
|
||||
keyspaceNames.add $keyspace
|
||||
checkExec db.env,
|
||||
if withoutRowid: createSql & " WITHOUT ROWID;" else: createSql & ";"
|
||||
|
||||
SqStoreRef.init(basePath, name, readOnly, inMemory, manualCheckpoint, keyspaceNames)
|
||||
var
|
||||
tmp: SqKeyspace
|
||||
defer:
|
||||
# We'll "move" ownership to the return value, effectively disabling "close"
|
||||
close(tmp)
|
||||
|
||||
tmp.getStmt = prepare(db.env, "SELECT value FROM " & name & " WHERE key = ?;")
|
||||
tmp.putStmt =
|
||||
prepare(db.env, "INSERT OR REPLACE INTO " & name & "(key, value) VALUES (?, ?);")
|
||||
tmp.delStmt = prepare(db.env, "DELETE FROM " & name & " WHERE key = ?;")
|
||||
tmp.containsStmt = prepare(db.env, "SELECT 1 FROM " & name & " WHERE key = ?;")
|
||||
tmp.findStmt0 = prepare(db.env, "SELECT key, value FROM " & name & ";")
|
||||
tmp.findStmt1 = prepare(db.env, "SELECT key, value FROM " & name & " WHERE key >= ?;")
|
||||
tmp.findStmt2 = prepare(db.env, "SELECT key, value FROM " & name & " WHERE key >= ? and key < ?;")
|
||||
|
||||
var res = SqKeyspaceRef()
|
||||
res[] = tmp
|
||||
tmp = SqKeyspace() # make close harmless
|
||||
ok res
|
||||
|
||||
when defined(metrics):
|
||||
import tables, times,
|
||||
|
|
|
@ -8,8 +8,9 @@ const
|
|||
key = [0'u8, 1, 2, 3]
|
||||
value = [3'u8, 2, 1, 0]
|
||||
value2 = [5'u8, 2, 1, 0]
|
||||
key2 = [255'u8, 255]
|
||||
|
||||
proc testKvStore*(db: KvStoreRef) =
|
||||
proc testKvStore*(db: KvStoreRef, supportsFind: bool) =
|
||||
check:
|
||||
db != nil
|
||||
|
||||
|
@ -20,9 +21,12 @@ proc testKvStore*(db: KvStoreRef) =
|
|||
|
||||
db.put(key, value)[]
|
||||
|
||||
var v: seq[byte]
|
||||
var k, v: seq[byte]
|
||||
proc grab(data: openArray[byte]) =
|
||||
v = @data
|
||||
proc grab2(key, value: openArray[byte]) =
|
||||
k = @key
|
||||
v = @value
|
||||
|
||||
check:
|
||||
db.contains(key)[]
|
||||
|
@ -42,6 +46,27 @@ proc testKvStore*(db: KvStoreRef) =
|
|||
|
||||
db.del(key)[] # does nothing
|
||||
|
||||
if supportsFind:
|
||||
check:
|
||||
db.find([], proc(key, value: openArray[byte]) = discard).get() == 0
|
||||
|
||||
db.put(key, value)[]
|
||||
|
||||
check:
|
||||
db.find([], grab2).get() == 1
|
||||
db.find(key, grab2).get() == 1
|
||||
k == key
|
||||
v == value
|
||||
|
||||
db.put(key2, value2)[]
|
||||
check:
|
||||
db.find([], grab2).get() == 2
|
||||
db.find([byte 255], grab2).get() == 1
|
||||
db.find([byte 255, 255], grab2).get() == 1
|
||||
db.find([byte 255, 255, 0], grab2).get() == 0
|
||||
db.find([byte 255, 255, 255], grab2).get() == 0
|
||||
db.find([byte 255, 0], grab2).get() == 0
|
||||
|
||||
suite "MemoryStoreRef":
|
||||
test "KvStore interface":
|
||||
testKvStore(kvStore MemStoreRef.init())
|
||||
testKvStore(kvStore MemStoreRef.init(), true)
|
||||
|
|
|
@ -14,4 +14,4 @@ suite "RocksStoreRef":
|
|||
let db = RocksStoreRef.init(tmp, "test")[]
|
||||
defer: db.close()
|
||||
|
||||
testKvStore(kvStore db)
|
||||
testKvStore(kvStore db, false)
|
||||
|
|
|
@ -10,8 +10,10 @@ procSuite "SqStoreRef":
|
|||
test "KvStore interface":
|
||||
let db = SqStoreRef.init("", "test", inMemory = true)[]
|
||||
defer: db.close()
|
||||
let kv = db.openKvStore()
|
||||
defer: kv.get()[].close()
|
||||
|
||||
testKvStore(kvStore db)
|
||||
testKvStore(kvStore kv.get(), true)
|
||||
|
||||
test "Prepare and execute statements":
|
||||
let db = SqStoreRef.init("", "test", inMemory = true)[]
|
||||
|
|
Loading…
Reference in New Issue