diff --git a/.changelog/9903.txt b/.changelog/9903.txt
new file mode 100644
index 0000000000..e341fcfcdb
--- /dev/null
+++ b/.changelog/9903.txt
@@ -0,0 +1,4 @@
+```release-note:improvement
+api: Enable setting query options on agent endpoints.
+```
+
diff --git a/api/agent.go b/api/agent.go
index 8c843ab4d0..0ed6fc2984 100644
--- a/api/agent.go
+++ b/api/agent.go
@@ -509,7 +509,14 @@ func (a *Agent) Checks() (map[string]*AgentCheck, error) {
 // ChecksWithFilter returns a subset of the locally registered checks that match
 // the given filter expression
 func (a *Agent) ChecksWithFilter(filter string) (map[string]*AgentCheck, error) {
+	return a.ChecksWithFilterOpts(filter, nil)
+}
+
+// ChecksWithFilterOpts returns a subset of the locally registered checks that match
+// the given filter expression and QueryOptions.
+func (a *Agent) ChecksWithFilterOpts(filter string, q *QueryOptions) (map[string]*AgentCheck, error) {
 	r := a.c.newRequest("GET", "/v1/agent/checks")
+	r.setQueryOptions(q)
 	r.filterQuery(filter)
 	_, resp, err := requireOK(a.c.doRequest(r))
 	if err != nil {
@@ -532,7 +539,14 @@ func (a *Agent) Services() (map[string]*AgentService, error) {
 // ServicesWithFilter returns a subset of the locally registered services that match
 // the given filter expression
 func (a *Agent) ServicesWithFilter(filter string) (map[string]*AgentService, error) {
+	return a.ServicesWithFilterOpts(filter, nil)
+}
+
+// ServicesWithFilterOpts returns a subset of the locally registered services that match
+// the given filter expression and QueryOptions.
+func (a *Agent) ServicesWithFilterOpts(filter string, q *QueryOptions) (map[string]*AgentService, error) {
 	r := a.c.newRequest("GET", "/v1/agent/services")
+	r.setQueryOptions(q)
 	r.filterQuery(filter)
 	_, resp, err := requireOK(a.c.doRequest(r))
 	if err != nil {
@@ -727,6 +741,19 @@ func (a *Agent) ServiceDeregister(serviceID string) error {
 	return nil
 }
 
+// ServiceDeregisterOpts is used to deregister a service with
+// the local agent with QueryOptions.
+func (a *Agent) ServiceDeregisterOpts(serviceID string, q *QueryOptions) error {
+	r := a.c.newRequest("PUT", "/v1/agent/service/deregister/"+serviceID)
+	r.setQueryOptions(q)
+	_, resp, err := requireOK(a.c.doRequest(r))
+	if err != nil {
+		return err
+	}
+	resp.Body.Close()
+	return nil
+}
+
 // PassTTL is used to set a TTL check to the passing state.
 //
 // DEPRECATION NOTICE: This interface is deprecated in favor of UpdateTTL().
@@ -801,6 +828,10 @@ type checkUpdate struct {
 // strings for compatibility (though a newer version of Consul will still be
 // required to use this API).
 func (a *Agent) UpdateTTL(checkID, output, status string) error {
+	return a.UpdateTTLOpts(checkID, output, status, nil)
+}
+
+func (a *Agent) UpdateTTLOpts(checkID, output, status string, q *QueryOptions) error {
 	switch status {
 	case "pass", HealthPassing:
 		status = HealthPassing
@@ -814,6 +845,7 @@ func (a *Agent) UpdateTTL(checkID, output, status string) error {
 
 	endpoint := fmt.Sprintf("/v1/agent/check/update/%s", checkID)
 	r := a.c.newRequest("PUT", endpoint)
+	r.setQueryOptions(q)
 	r.obj = &checkUpdate{
 		Status: status,
 		Output: output,
@@ -843,7 +875,14 @@ func (a *Agent) CheckRegister(check *AgentCheckRegistration) error {
 // CheckDeregister is used to deregister a check with
 // the local agent
 func (a *Agent) CheckDeregister(checkID string) error {
+	return a.CheckDeregisterOpts(checkID, nil)
+}
+
+// CheckDeregisterOpts is used to deregister a check with
+// the local agent using query options
+func (a *Agent) CheckDeregisterOpts(checkID string, q *QueryOptions) error {
 	r := a.c.newRequest("PUT", "/v1/agent/check/deregister/"+checkID)
+	r.setQueryOptions(q)
 	_, resp, err := requireOK(a.c.doRequest(r))
 	if err != nil {
 		return err
diff --git a/api/agent_test.go b/api/agent_test.go
index ef267bff18..12056f2367 100644
--- a/api/agent_test.go
+++ b/api/agent_test.go
@@ -333,7 +333,7 @@ func TestAPI_AgentServices(t *testing.T) {
 	}
 }
 
-func TestAPI_AgentServicesWithFilter(t *testing.T) {
+func TestAPI_AgentServicesWithFilterOpts(t *testing.T) {
 	t.Parallel()
 	c, s := makeClient(t)
 	defer s.Stop()
@@ -362,7 +362,8 @@ func TestAPI_AgentServicesWithFilter(t *testing.T) {
 	}
 	require.NoError(t, agent.ServiceRegister(reg))
 
-	services, err := agent.ServicesWithFilter("foo in Tags")
+	opts := &QueryOptions{Namespace: defaultNamespace}
+	services, err := agent.ServicesWithFilterOpts("foo in Tags", opts)
 	require.NoError(t, err)
 	require.Len(t, services, 1)
 	_, ok := services["foo2"]
@@ -852,6 +853,63 @@ func TestAPI_AgentSetTTLStatus(t *testing.T) {
 	}
 }
 
+func TestAPI_AgentUpdateTTLOpts(t *testing.T) {
+	t.Parallel()
+	c, s := makeClient(t)
+	defer s.Stop()
+
+	agent := c.Agent()
+	s.WaitForSerfCheck(t)
+
+	reg := &AgentServiceRegistration{
+		Name: "foo",
+		Check: &AgentServiceCheck{
+			TTL: "15s",
+		},
+	}
+	if err := agent.ServiceRegister(reg); err != nil {
+		t.Fatalf("err: %v", err)
+	}
+
+	verify := func(status, output string) {
+		checks, err := agent.Checks()
+		if err != nil {
+			t.Fatalf("err: %v", err)
+		}
+		chk, ok := checks["service:foo"]
+		if !ok {
+			t.Fatalf("missing check: %v", checks)
+		}
+		if chk.Status != status {
+			t.Fatalf("Bad: %#v", chk)
+		}
+		if chk.Output != output {
+			t.Fatalf("Bad: %#v", chk)
+		}
+	}
+
+	opts := &QueryOptions{Namespace: defaultNamespace}
+
+	if err := agent.UpdateTTLOpts("service:foo", "foo", HealthWarning, opts); err != nil {
+		t.Fatalf("err: %v", err)
+	}
+	verify(HealthWarning, "foo")
+
+	if err := agent.UpdateTTLOpts("service:foo", "bar", HealthPassing, opts); err != nil {
+		t.Fatalf("err: %v", err)
+	}
+	verify(HealthPassing, "bar")
+
+	if err := agent.UpdateTTL("service:foo", "baz", HealthCritical); err != nil {
+		t.Fatalf("err: %v", err)
+	}
+	verify(HealthCritical, "baz")
+
+	if err := agent.ServiceDeregister("foo"); err != nil {
+		t.Fatalf("err: %v", err)
+	}
+}
+
 func TestAPI_AgentChecks(t *testing.T) {
 	t.Parallel()
 	c, s := makeClient(t)
@@ -887,7 +945,7 @@ func TestAPI_AgentChecks(t *testing.T) {
 	}
 }
 
-func TestAPI_AgentChecksWithFilter(t *testing.T) {
+func TestAPI_AgentChecksWithFilterOpts(t *testing.T) {
 	t.Parallel()
 	c, s := makeClient(t)
 	defer s.Stop()
@@ -905,7 +963,8 @@ func TestAPI_AgentChecksWithFilter(t *testing.T) {
 	reg.TTL = "15s"
 	require.NoError(t, agent.CheckRegister(reg))
 
-	checks, err := agent.ChecksWithFilter("Name == foo")
+	opts := &QueryOptions{Namespace: defaultNamespace}
+	checks, err := agent.ChecksWithFilterOpts("Name == foo", opts)
 	require.NoError(t, err)
 	require.Len(t, checks, 1)
 	_, ok := checks["foo"]