Dan
1efee85595
fixing signature for list samples.
2021-02-15 12:10:15 -05:00
Dan
fdd21d8d34
Get Samples must remain the same as it is on the master branch, as this is used by external teams. Looks like you have the same identical code in the dashboard that I am removing here.
2021-02-15 12:07:44 -05:00
Dan
14dc370c1d
Removing "correct_computing_id", which has run, and is no longer needed.
2021-02-15 11:39:50 -05:00
Dan
78c1431565
Removing "split_location_columns", which has run, and is no longer needed.
2021-02-15 11:37:57 -05:00
Dan
9de6602667
Removing "merge_similar_records", which has run, and is no longer needed.
2021-02-15 11:35:49 -05:00
Nile Walker
b4c8cf7400
Readded Test Inclusion Option
2021-02-01 08:36:48 -05:00
Nile Walker
ebb8a62a08
Added Notifications per file searching
2021-01-29 16:40:10 -05:00
Nile Walker
b56f70579a
Merged Histories with Master
2021-01-29 09:40:59 -05:00
Dan
b3e4bfb3f5
Add a field to sample that contains the moment the sample was added to the database, and make it possible to retrieve records on this date.
2021-01-19 15:47:41 -05:00
Dan
67937535bb
switch from accepting bar codes to accepting a last modified date when querying samples.
2021-01-08 17:26:25 -05:00
Dan
956d817091
1. Assure that when adding new samples, the location and station are correctly updated.
...
2. Add the ability to correct computing ids using existing emails where possible.
3. Adding a last modified date that will always be the last time the record was touched.
4. being a little more careful about location codes, setting to 1 if the location if 4 digits, otherwise respecting the location for 3 digits. Bit of a hack, hope we only run this once in production.
5. fixing a bug I found myself in where it would not load the index page if start_date got nulled out.
6. Adding a few much needed tests.
7. Correcting some issues with db migrations.
2021-01-07 16:59:36 -05:00
Nile Walker
c68a0c2642
Added Form Responsiveness
2020-12-30 09:06:46 -05:00
Dan
a37e75090e
Merge branch 'master' of github.com:sartography/uva-covid19-testing-communicator
2020-12-16 11:51:51 -05:00
Dan
34f1a3640e
adding an additional, protected, api endpoint to allow an external system to export sample information.
2020-12-16 11:51:36 -05:00
Aaron Louie
25f3d3e978
Stores and displays Computing ID separately
2020-12-16 10:24:43 -05:00
Dan
421c6eb791
set up a mechanism to retry sending messages that failed previously vai an api call.
2020-10-17 15:56:47 -04:00
Dan
921201ec90
adding optional file name argument for text messages as well.
2020-10-15 15:31:28 -04:00
Dan
cf7607f2d3
Protect against loading files without actually injesting them by reserving the commit to execute on all records, then calling a delete.
...
Add flask executor so that long running tasks do not get killed when called from the API endpoints.
Allow passing a specific file when calling the notification endpoints so that we can send out notifications to only those individuals that are included in a specific import file from IVY.
2020-10-15 15:29:40 -04:00
Dan
5d9dbc12fe
add additional endpoints so we can manually send out all notifications.
2020-10-13 16:13:41 -04:00
Dan
aa526b4c07
Adding code that will properly pull in the full bar code from IVY,
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and a script that will fix previously incorrect pairings of data.
2020-10-07 12:58:44 -04:00
Dan Funk
6ee2d4f019
Don't load samples from firebase (they will be added via direct calls to the api)
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Provide a mechanism to clear out all the samples - should remove this or protect it at some point.
2020-09-23 15:24:09 -04:00
Dan Funk
f0132df1e5
Adding an endpoint to create new sample records, and an index page
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for displaying all samples in a paginated view.
2020-09-23 12:44:11 -04:00
Dan Funk
ad1f9c0b3a
Basic email configuration
2020-09-17 11:18:51 -04:00
Dan Funk
872cdfe0ef
Just a base boilerplate flask app with a postgres database, alembic migrations, connexion api.
2020-09-10 11:28:58 -04:00
