Added Migrations from master

migrations/README

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+Generic single-database configuration.

migrations/alembic.ini

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+# A generic, single database configuration.
+
+[alembic]
+# template used to generate migration files
+# file_template = %%(rev)s_%%(slug)s
+
+# set to 'true' to run the environment during
+# the 'revision' command, regardless of autogenerate
+# revision_environment = false
+
+
+# Logging configuration
+[loggers]
+keys = root,sqlalchemy,alembic
+
+[handlers]
+keys = console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = WARN
+handlers = console
+qualname =
+
+[logger_sqlalchemy]
+level = WARN
+handlers =
+qualname = sqlalchemy.engine
+
+[logger_alembic]
+level = INFO
+handlers =
+qualname = alembic
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(levelname)-5.5s [%(name)s] %(message)s
+datefmt = %H:%M:%S
+
+[alembic:exclude]
+tables = apscheduler_jobs

migrations/env.py

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+from __future__ import with_statement
+
+import logging
+from logging.config import fileConfig
+
+from sqlalchemy import engine_from_config
+from sqlalchemy import pool
+
+from alembic import context
+
+# this is the Alembic Config object, which provides
+# access to the values within the .ini file in use.
+from sqlalchemy.engine import Engine
+
+config = context.config
+
+# Interpret the config file for Python logging.
+# This line sets up loggers basically.
+fileConfig(config.config_file_name)
+logger = logging.getLogger('alembic.env')
+
+# add your model's MetaData object here
+# for 'autogenerate' support
+# from myapp import mymodel
+# target_metadata = mymodel.Base.metadata
+from flask import current_app
+config.set_main_option(
+    'sqlalchemy.url',
+    str(current_app.extensions['migrate'].db.engine.url).replace('%', '%%'))
+target_metadata = current_app.extensions['migrate'].db.metadata
+
+# other values from the config, defined by the needs of env.py,
+# can be acquired:
+# my_important_option = config.get_main_option("my_important_option")
+# ... etc.
+
+
+def run_migrations_offline():
+    """Run migrations in 'offline' mode.
+
+    This configures the context with just a URL
+    and not an Engine, though an Engine is acceptable
+    here as well.  By skipping the Engine creation
+    we don't even need a DBAPI to be available.
+
+    Calls to context.execute() here emit the given string to the
+    script output.
+
+    """
+    url = config.get_main_option("sqlalchemy.url")
+    context.configure(
+        url=url, target_metadata=target_metadata, literal_binds=True
+    )
+
+    with context.begin_transaction():
+        context.run_migrations()
+
+
+def exclude_tables_from_config(config_):
+    tables_ = config_.get("tables", None)
+    if tables_ is not None:
+        tables = tables_.split(",")
+    return tables
+
+
+exclude_tables = exclude_tables_from_config(config.get_section('alembic:exclude'))
+
+
+def include_object(object, name, type_, reflected, compare_to):
+    if type_ == "table" and name in exclude_tables:
+        return False
+    else:
+        return True
+
+
+def run_migrations_online():
+    """Run migrations in 'online' mode.
+
+    In this scenario we need to create an Engine
+    and associate a connection with the context.
+
+    """
+
+    # this callback is used to prevent an auto-migration from being generated
+    # when there are no changes to the schema
+    # reference: http://alembic.zzzcomputing.com/en/latest/cookbook.html
+    def process_revision_directives(context, revision, directives):
+        if getattr(config.cmd_opts, 'autogenerate', False):
+            script = directives[0]
+            if script.upgrade_ops.is_empty():
+                directives[:] = []
+                logger.info('No changes in schema detected.')
+
+    connectable = engine_from_config(
+        config.get_section(config.config_ini_section),
+        prefix='sqlalchemy.',
+        poolclass=pool.NullPool,
+    )
+
+    with connectable.connect() as connection:
+        context.configure(
+            connection=connection,
+            target_metadata=target_metadata,
+            include_object=include_object,
+            process_revision_directives=process_revision_directives,
+            **current_app.extensions['migrate'].configure_args
+        )
+
+        with context.begin_transaction():
+            context.run_migrations()
+
+
+if context.is_offline_mode():
+    run_migrations_offline()
+else:
+    run_migrations_online()
+
+
+
+
+

migrations/script.py.mako

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+"""${message}
+
+Revision ID: ${up_revision}
+Revises: ${down_revision | comma,n}
+Create Date: ${create_date}
+
+"""
+from alembic import op
+import sqlalchemy as sa
+${imports if imports else ""}
+
+# revision identifiers, used by Alembic.
+revision = ${repr(up_revision)}
+down_revision = ${repr(down_revision)}
+branch_labels = ${repr(branch_labels)}
+depends_on = ${repr(depends_on)}
+
+
+def upgrade():
+    ${upgrades if upgrades else "pass"}
+
+
+def downgrade():
+    ${downgrades if downgrades else "pass"}

migrations/versions/166ae4251208_.py

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+"""empty message
+
+Revision ID: 166ae4251208
+Revises: 
+Create Date: 2020-09-10 11:25:13.286571
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '166ae4251208'
+down_revision = None
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('contact',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('email', sa.String(), nullable=True),
+    sa.Column('phone', sa.String(), nullable=True),
+    sa.PrimaryKeyConstraint('id')
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table('contact')
+    # ### end Alembic commands ###

migrations/versions/3525dcf128cb_.py

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+"""empty message
+
+Revision ID: 3525dcf128cb
+Revises: 39a845579587
+Create Date: 2020-09-23 16:23:09.383030
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '3525dcf128cb'
+down_revision = '39a845579587'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('invitation',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('date_sent', sa.DateTime(timezone=True), nullable=True),
+    sa.Column('location', sa.String(), nullable=True),
+    sa.Column('date', sa.String(), nullable=True),
+    sa.Column('total_recipients', sa.Integer(), nullable=True),
+    sa.PrimaryKeyConstraint('id')
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table('invitation')
+    # ### end Alembic commands ###

migrations/versions/39a845579587_.py

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+"""empty message
+
+Revision ID: 39a845579587
+Revises: fa4b41e0bfe6
+Create Date: 2020-09-23 15:50:44.987745
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '39a845579587'
+down_revision = 'fa4b41e0bfe6'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('ivy_file', sa.Column('sample_count', sa.Integer(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('ivy_file', 'sample_count')
+    # ### end Alembic commands ###

migrations/versions/8a2bf0c948ec_.py

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+"""empty message
+
+Revision ID: 8a2bf0c948ec
+Revises: 166ae4251208
+Create Date: 2020-09-14 13:16:39.099811
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '8a2bf0c948ec'
+down_revision = '166ae4251208'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('sample',
+    sa.Column('barcode', sa.String(), nullable=False),
+    sa.Column('student_id', sa.Integer(), nullable=True),
+    sa.Column('date', sa.DateTime(), nullable=True),
+    sa.Column('location', sa.Integer(), nullable=True),
+    sa.Column('phone', sa.String(), nullable=True),
+    sa.Column('email', sa.String(), nullable=True),
+    sa.Column('result_code', sa.String(), nullable=True),
+    sa.Column('notified', sa.Boolean(), nullable=True),
+    sa.Column('in_firebase', sa.Boolean(), nullable=True),
+    sa.Column('in_ivy', sa.Boolean(), nullable=True),
+    sa.PrimaryKeyConstraint('barcode')
+    )
+    op.drop_table('contact')
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('contact',
+    sa.Column('id', sa.INTEGER(), autoincrement=True, nullable=False),
+    sa.Column('email', sa.VARCHAR(), autoincrement=False, nullable=True),
+    sa.Column('phone', sa.VARCHAR(), autoincrement=False, nullable=True),
+    sa.PrimaryKeyConstraint('id', name='contact_pkey')
+    )
+    op.drop_table('sample')
+    # ### end Alembic commands ###

migrations/versions/a005fc9e7cce_.py

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+"""empty message
+
+Revision ID: a005fc9e7cce
+Revises: 3525dcf128cb
+Create Date: 2020-10-15 13:40:29.696495
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = 'a005fc9e7cce'
+down_revision = '3525dcf128cb'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('sample', sa.Column('ivy_file', sa.String(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('sample', 'ivy_file')
+    # ### end Alembic commands ###

migrations/versions/d904b7b3c1c0_.py

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+"""empty message
+
+Revision ID: d904b7b3c1c0
+Revises: 8a2bf0c948ec
+Create Date: 2020-09-16 14:24:44.697062
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = 'd904b7b3c1c0'
+down_revision = '8a2bf0c948ec'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('notification',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('date', sa.DateTime(), nullable=True),
+    sa.Column('type', sa.String(), nullable=True),
+    sa.Column('successful', sa.Boolean(), nullable=True),
+    sa.Column('error_message', sa.String(), nullable=True),
+    sa.Column('sample_barcode', sa.String(), nullable=False),
+    sa.ForeignKeyConstraint(['sample_barcode'], ['sample.barcode'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.add_column('sample', sa.Column('email_notified', sa.Boolean(), nullable=True))
+    op.add_column('sample', sa.Column('text_notified', sa.Boolean(), nullable=True))
+    op.drop_column('sample', 'notified')
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('sample', sa.Column('notified', sa.BOOLEAN(), autoincrement=False, nullable=True))
+    op.drop_column('sample', 'text_notified')
+    op.drop_column('sample', 'email_notified')
+    op.drop_table('notification')
+    # ### end Alembic commands ###

migrations/versions/fa4b41e0bfe6_.py

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+"""empty message
+
+Revision ID: fa4b41e0bfe6
+Revises: d904b7b3c1c0
+Create Date: 2020-09-23 14:05:50.766928
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = 'fa4b41e0bfe6'
+down_revision = 'd904b7b3c1c0'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('ivy_file',
+    sa.Column('file_name', sa.String(), nullable=False),
+    sa.Column('date_added', sa.DateTime(timezone=True), nullable=True),
+    sa.PrimaryKeyConstraint('file_name')
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table('ivy_file')
+    # ### end Alembic commands ###