uva-covid19-testing-communicator/communicator/api.yml

openapi: "3.0.2"
info:
  version: 1.0.0
  title: Workflow Microservice
  license:
    name: MIT
servers:
  - url: http://localhost:5000/v1.0
paths:
  /status:
    get:
      operationId: communicator.api.admin.status
      summary: provides a basic status endpoint, just get things off the ground.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Status indicator that the app is up and alive.
          content:
            application/json:
              schema:
                $ref: "#/components/schemas/Status"
  /update_data:
    get:
      operationId: communicator.api.admin.update_data
      summary: Checks the local file system and firecloud for data and loads it into the db.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Status indicator that the app is up and alive.
          content:
            text/plain:
              schema:
                type: string
  /merge_similar_records:
    get:
      operationId: communicator.api.admin.merge_similar_records
      summary: Checks the local file system and firecloud for data and loads it into the db.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Status indicator that the app is up and alive.
          content:
            text/plain:
              schema:
                type: string
  /split_location_column:
    get:
      operationId: communicator.api.admin.split_location_column
      summary: Checks the local file system and firecloud for data and loads it into the db.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Status indicator that the app is up and alive.
          content:
            text/plain:
              schema:
                type: string
  /correct_computing_id:
    get:
      operationId: communicator.api.admin.correct_computing_id
      summary: Correct the computing ids if they are missing by trying to pull it from emails.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Task completed successfully.
          content:
            text/plain:
              schema:
                type: string
  /update_and_notify:
    get:
      operationId: communicator.api.admin.update_and_notify
      summary: Does everything, updates data from IVY, and sends out all notifications.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Just returns a 200 if it was successful.
          content:
            text/plain:
              schema:
                type: string
  /notify_by_email:
    get:
      parameters:
        - in: query
          name: file_name
          schema:
            type: string
          description: An optional file name, only records from this ivy file will be notified.
        - in: query
          name: retry
          schema:
            type: boolean
          description: If set to true, will attept to resend previous failures.
      operationId: communicator.api.admin.notify_by_email
      summary: when called, reviews all samples, and sends out any pending email notifications.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Just returns a 200 if it was successful.
          content:
            text/plain:
              schema:
                type: string
  /notify_by_text:
    get:
      parameters:
        - in: query
          name: file_name
          schema:
            type: string
          description: An optional file name, only records from this ivy file will be notified.
        - in: query
          name: retry
          schema:
            type: boolean
          description: If set to true, will attept to resend previous failures.
      operationId: communicator.api.admin.notify_by_text
      summary: when called, reviews all samples, and sends out any pending SMS notifications.
      security: []  # Disable security for this endpoint only.
      responses:
        '200':
          description: Just returns a 200 if it was successful.
          content:
            text/plain:
              schema:
                type: string
  /sample:
    post:
      operationId: communicator.api.admin.add_sample
      summary: Creates a new sample
      tags:
        - Samples
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/Sample'
      responses:
        '200':
          description: Sample created successfully
          content:
            application/json:
              schema:
                type: array
                items:
                  $ref: "#/components/schemas/Sample"
    delete:
      operationId: communicator.api.admin.clear_samples
      summary: Removes the given samples completely.
      tags:
        - Samples
      responses:
        '204':
          description: All Samples removed.
    get:
      operationId: communicator.api.admin.get_samples
      summary: Returns all the samples, can be restricted by sending a barcode for the last sample received.
      tags:
        - Samples
      security:
        - ApiKeyAuth: []
      parameters:
        - in: query
          name: bar_code
          required: false
          description: Return all samples AFTER this bar code.
          schema:
            type: string
      responses:
        '200':
          description: a list of samples
          content:
            text/plain:
              schema:
                type: array
                items:
                  $ref: "#/components/schemas/Sample"

components:
  securitySchemes:
    ApiKeyAuth:
      type: apiKey
      in: header
      name: X-CR-API-KEY
      x-apikeyInfoFunc: communicator.api.admin.verify_token
  schemas:
    Status:
      properties:
        status:
          type: string
    Sample:
      properties:
        barcode:
          type: string
          example: "000000111-202009091449-4321"
        student_id:
          type: string
          example: "000000111"
        computing_id:
          type: string
          example: "abc2d"
        date:
          type: string
          format: date_time
          example: "2019-12-25T09:12:33.001Z"
        location:
          type: string
          example: "0001"