Feature/docker CVE issues (#558)

* updated Dockerfile to try to remove security vulnerabilities w/ burnettk

* we require curl for health checks w/ burnettk

* try to scan docker image in ci

* use Dockerfile from backend w/ burnettk

* continue-on-error w/ burnettk

* attempt to elevate permissions of snyk w/ burnettk

* added snyk security github workflow w/ burnettk

* fixed location of constraints w/ burnettk

* add in or true for snyk tests w/ burnettk

* sent the snyk token w/ burnettk

* specify the directory for the sarif file w/ burnettk

* updated spiffworkflow-connector-command for snyk issue w/ burnettk

* updated sql statements sanitize input

* ignore issues for debug_controller and check frontend with snyk w/ burnettk

* updated babel and electron for snyk w/ burnettk

* some more updates to fix vulnerabilities w/ burnettk

* prune repeated deps for frontend builds since

* uncomment ci code so it runs again and use node for frontend base image w/ burnettk

* fixed backend image name w/ burnettk

* pyl w/ burnettk

---------

Co-authored-by: jasquat <jasquat@users.noreply.github.com>

.github/workflows/backend_tests.yml

@@ -208,6 +208,10 @@ jobs:
         run: ./bin/run_pre_commit_in_ci
 
   check_docker_start_script:
+    permissions:
+      contents: read # for actions/checkout to fetch code
+      security-events: write # for github/codeql-action/upload-sarif to upload SARIF results
+      actions: read # only required for a private repository by github/codeql-action/upload-sarif to get the Action run status
     runs-on: ubuntu-latest
     steps:
       - name: Check out the repository

.github/workflows/snyk-security.yml

@@ -0,0 +1,137 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+# A sample workflow which sets up Snyk to analyze the full Snyk platform (Snyk Open Source, Snyk Code,
+# Snyk Container and Snyk Infrastructure as Code)
+# The setup installs the Snyk CLI - for more details on the possible commands
+# check https://docs.snyk.io/snyk-cli/cli-reference
+# The results of Snyk Code are then uploaded to GitHub Security Code Scanning
+#
+# In order to use the Snyk Action you will need to have a Snyk API token.
+# More details in https://github.com/snyk/actions#getting-your-snyk-token
+# or you can signup for free at https://snyk.io/login
+#
+# For more examples, including how to limit scans to only high-severity issues
+# and fail PR checks, see https://github.com/snyk/actions/
+
+name: Snyk Security
+
+# on:
+#   push:
+#     branches: ["main" ]
+#   pull_request:
+#     branches: ["main"]
+on:
+  - push
+  - pull_request
+
+permissions:
+  contents: read
+
+jobs:
+  snyk-backend:
+    permissions:
+      contents: read # for actions/checkout to fetch code
+      security-events: write # for github/codeql-action/upload-sarif to upload SARIF results
+      actions: read # only required for a private repository by github/codeql-action/upload-sarif to get the Action run status
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        working-directory: spiffworkflow-backend
+    env:
+      # This is where you will need to introduce the Snyk API token created with your Snyk account
+      SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Snyk CLI to check for security issues
+        # Snyk can be used to break the build when it detects security issues.
+        # In this case we want to upload the SAST issues to GitHub Code Scanning
+        uses: snyk/actions/setup@806182742461562b67788a64410098c9d9b96adb
+        env:
+          # This is where you will need to introduce the Snyk API token created with your Snyk account
+          SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
+
+      - name: Upgrade pip
+        run: |
+          pip install --constraint=../.github/workflows/constraints.txt pip
+          pip --version
+      - name: Install Poetry
+        run: |
+          pipx install --pip-args=--constraint=../.github/workflows/constraints.txt poetry
+          poetry --version
+      - name: Poetry Install
+        run: poetry install
+
+        # Runs Snyk Code (SAST) analysis and uploads result into GitHub.
+        # Use || true to not fail the pipeline
+      - name: Snyk Code test
+        run: snyk code test --sarif > snyk-code.sarif || true
+
+        # Runs Snyk Open Source (SCA) analysis and uploads result to Snyk.
+      - name: Snyk Open Source monitor
+        run: snyk monitor --all-projects
+
+        # Build the docker image for testing
+      - name: Build a Docker image
+        run: docker build -t spiffworkflow-backend/snyk-test .
+        # Runs Snyk Container (Container and SCA) analysis and uploads result to Snyk.
+      - name: Snyk Container monitor
+        run: snyk container monitor spiffworkflow-backend/snyk-test --file=Dockerfile
+
+        # Push the Snyk Code results into GitHub Code Scanning tab
+      - name: Upload result to GitHub Code Scanning
+        uses: github/codeql-action/upload-sarif@v2
+        with:
+          sarif_file: spiffworkflow-backend/snyk-code.sarif
+  snyk-frontend:
+    permissions:
+      contents: read # for actions/checkout to fetch code
+      security-events: write # for github/codeql-action/upload-sarif to upload SARIF results
+      actions: read # only required for a private repository by github/codeql-action/upload-sarif to get the Action run status
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        working-directory: spiffworkflow-frontend
+    env:
+      # This is where you will need to introduce the Snyk API token created with your Snyk account
+      SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Snyk CLI to check for security issues
+        # Snyk can be used to break the build when it detects security issues.
+        # In this case we want to upload the SAST issues to GitHub Code Scanning
+        uses: snyk/actions/setup@806182742461562b67788a64410098c9d9b96adb
+        env:
+          # This is where you will need to introduce the Snyk API token created with your Snyk account
+          SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
+
+      - name: Setup Node
+        uses: actions/setup-node@v3
+        with:
+          node-version: 18.x
+      - run: npm install
+
+        # Runs Snyk Code (SAST) analysis and uploads result into GitHub.
+        # Use || true to not fail the pipeline
+      - name: Snyk Code test
+        run: snyk code test --sarif > snyk-code.sarif || true
+
+        # Runs Snyk Open Source (SCA) analysis and uploads result to Snyk.
+      - name: Snyk Open Source monitor
+        run: snyk monitor --all-projects
+
+        # Build the docker image for testing
+      - name: Build a Docker image
+        run: docker build -t spiffworkflow-frontend/snyk-test .
+        # Runs Snyk Container (Container and SCA) analysis and uploads result to Snyk.
+      - name: Snyk Container monitor
+        # pruning repeated subdependencies because it fails otherwise
+        run: snyk container monitor spiffworkflow-frontend/snyk-test --file=Dockerfile --prune-repeated-subdependencies
+
+        # Push the Snyk Code results into GitHub Code Scanning tab
+      - name: Upload result to GitHub Code Scanning
+        uses: github/codeql-action/upload-sarif@v2
+        with:
+          sarif_file: spiffworkflow-frontend/snyk-code.sarif

spiffworkflow-backend/.snyk

@@ -1,12 +1,19 @@
 # Snyk (https://snyk.io) policy file, patches or ignores known vulnerabilities.
 version: v1.25.0
 # ignores vulnerabilities until expiry date; change duration by modifying expiry date
-#
+ignore: {}
-# leaving for documenting how to ignore items
-# ignore:
-#   SNYK-PYTHON-FLASK-5490129:
-#     - '*':
-#         reason: Filed ticket to upgrade flask
-#         expires: 2024-06-02T14:48:14.372Z
-#         created: 2023-05-03T14:48:14.379Z
 patch: {}
+
+# when running snyk ignore to ignore issues with "snyk code test"
+# make sure to EXCLUDE the id option. Otherwise a bad file is created.
+#
+# Works:
+#   snyk ignore --file-path=src/spiffworkflow_backend/routes/debug_controller.py
+#
+# Des not work:
+#   snyk ignore --file-path=src/spiffworkflow_backend/routes/debug_controller.py --id=whatever
+#
+# a single vulnerability cannot be ignored for "snyk code test". Only whole files can be ingored.
+exclude:
+  global:
+    - src/spiffworkflow_backend/routes/debug_controller.py

spiffworkflow-backend/Dockerfile

@@ -1,5 +1,5 @@
 # Base image to share ENV vars that activate VENV.
-FROM ghcr.io/sartography/python:3.11 AS base
+FROM python:3.11.6-slim-bookworm AS base
 
 ENV VIRTUAL_ENV=/app/venv
 RUN python3 -m venv $VIRTUAL_ENV
@@ -11,11 +11,18 @@ WORKDIR /app
 # vim is just for debugging
 FROM base AS deployment
 
+# git-core because the app does "git commit", etc
+# curl because the docker health check uses it
+# gunicorn3 for web server
+# default-mysql-client for convenience accessing mysql docker container
+# vim ftw
 RUN apt-get update \
  && apt-get clean -y \
- && apt-get install -y -q curl git-core gunicorn3 default-mysql-client vim \
+ && apt-get install -y -q git-core curl gunicorn3 default-mysql-client vim \
  && rm -rf /var/lib/apt/lists/*
 
+RUN pip install poetry==1.6.1
+
 # Setup image for installing Python dependencies.
 FROM base AS setup
 
@@ -24,7 +31,7 @@ FROM base AS setup
 #   problem with poetry but with lazy-object-proxy (1.7.1) not supporting PEP 517 builds.
 #   You can verify this by running 'pip wheel --use-pep517 "lazy-object-proxy (==1.7.1) ; python_version >= "3.6""'.
 # Pinnning to 1.3.2 to attempt to avoid it.
-RUN pip install poetry==1.3.2
+RUN pip install poetry==1.6.1
 RUN useradd _gunicorn --no-create-home --user-group
 
 # default-libmysqlclient-dev for mysqlclient lib

spiffworkflow-backend/poetry.lock

@@ -2389,7 +2389,7 @@ typing-extensions = "^4.8.0"
 type = "git"
 url = "https://github.com/sartography/spiffworkflow-connector-command.git"
 reference = "main"
-resolved_reference = "022c01826e98fd3997ec21652c88c1343279b6f4"
+resolved_reference = "7e20603849ee609267ddc97c8433077e09ccd124"
 
 [[package]]
 name = "sqlalchemy"

spiffworkflow-backend/src/spiffworkflow_backend/data_stores/kkv.py

@@ -37,7 +37,7 @@ class KKVDataStore(BpmnDataStoreSpecification):  # type: ignore
     def set(self, my_task: SpiffTask) -> None:
         """set."""
         data = my_task.data[self.bpmn_id]
-        if type(data) != dict:
+        if not isinstance(data, dict):
             raise Exception(
                 f"When writing to this data store, a dictionary is expected as the value for variable '{self.bpmn_id}'"
             )
@@ -45,7 +45,7 @@ class KKVDataStore(BpmnDataStoreSpecification):  # type: ignore
             if second_level is None:
                 self._delete_all_for_top_level_key(top_level_key)
                 continue
-            if type(second_level) != dict:
+            if not isinstance(second_level, dict):
                 raise Exception(
                     "When writing to this data store, a dictionary is expected as the value for"
                     f" '{self.bpmn_id}[\"{top_level_key}\"]'"

spiffworkflow-backend/src/spiffworkflow_backend/services/authorization_service.py

@@ -33,8 +33,9 @@ from spiffworkflow_backend.models.user_group_assignment_waiting import UserGroup
 from spiffworkflow_backend.routes.openid_blueprint import openid_blueprint
 from spiffworkflow_backend.services.user_service import UserService
 from sqlalchemy import and_
+from sqlalchemy import func
+from sqlalchemy import literal
 from sqlalchemy import or_
-from sqlalchemy import text
 
 
 @dataclass
@@ -111,10 +112,11 @@ class AuthorizationService:
             .join(PermissionTargetModel)
             .filter(
                 or_(
-                    text(f"'{target_uri_normalized}' LIKE permission_target.uri"),
+                    # found from https://stackoverflow.com/a/46783555
+                    literal(target_uri_normalized).like(PermissionTargetModel.uri),
                     # to check for exact matches as well
                     # see test_user_can_access_base_path_when_given_wildcard_permission unit test
-                    text(f"'{target_uri_normalized}' = replace(replace(permission_target.uri, '/%', ''), ':%', '')"),
+                    func.REPLACE(func.REPLACE(PermissionTargetModel.uri, "/%", ""), ":%", "") == target_uri_normalized,
                 )
             )
             .all()

spiffworkflow-frontend/Dockerfile

@@ -1,7 +1,8 @@
 # Base image to share ENV vars that activate VENV.
-FROM quay.io/sartography/node:latest AS base
+FROM node:20.8.1-bookworm-slim AS base
 
 RUN mkdir /app
+
 WORKDIR /app
 
 # this matches total memory on spiffworkflow-demo
@@ -31,11 +32,14 @@ FROM base AS final
 
 LABEL description="Frontend component of SpiffWorkflow, a software development platform for building, running, and monitoring executable diagrams"
 
-# WARNING: On localhost frontend assumes backend is one port lowe.
+# WARNING: On localhost frontend assumes backend is one port lower.
 ENV PORT0=7001
 
 COPY --from=setup /app/build /app/build
 COPY --from=setup /app/bin /app/bin
 COPY --from=setup /app/node_modules.justserve /app/node_modules
 
-ENTRYPOINT ["/app/bin/boot_server_in_docker"]
+RUN chown -R node:node /app
+
+USER node
+CMD ["/app/bin/boot_server_in_docker"]