updated sqlalchemy to 2.0 due to safety complaints w/ burnettk

spiffworkflow-backend/conftest.py

@@ -45,8 +45,8 @@ def app() -> Flask:
 def with_db_and_bpmn_file_cleanup() -> None:
     """Do it cleanly!"""
     meta = db.metadata
-    db.session.execute(db.update(BpmnProcessModel, values={"top_level_process_id": None}))
-    db.session.execute(db.update(BpmnProcessModel, values={"direct_parent_process_id": None}))
+    db.session.execute(db.update(BpmnProcessModel).values(top_level_process_id=None))
+    db.session.execute(db.update(BpmnProcessModel).values(direct_parent_process_id=None))
 
     for table in reversed(meta.sorted_tables):
         db.session.execute(table.delete())

spiffworkflow-backend/pyproject.toml

@@ -49,7 +49,6 @@ setuptools = "^65.5.1"
 connexion = {extras = [ "swagger-ui",], version = "^2"}
 lxml = "^4.9.1"
 marshmallow-enum = "^1.5.1"
-marshmallow-sqlalchemy = "^0.28.0"
 PyJWT = "^2.6.0"
 gunicorn = "^20.1.0"
 APScheduler = "*"
@@ -73,7 +72,7 @@ types-pytz = "^2022.1.1"
 # sqlalchemy-stubs = { git = "https://github.com/dropbox/sqlalchemy-stubs.git", rev = "master" }
 # sqlalchemy-stubs = {develop = true, path = "/Users/kevin/projects/github/sqlalchemy-stubs"}
 # for now use my fork
-sqlalchemy-stubs = { git = "https://github.com/burnettk/sqlalchemy-stubs.git", rev = "scoped-session-delete" }
+# sqlalchemy-stubs = { git = "https://github.com/burnettk/sqlalchemy-stubs.git", rev = "scoped-session-delete" }
 simplejson = "^3.17.6"
 pytz = "^2022.6"
 dateparser = "^1.1.2"
@@ -83,6 +82,7 @@ pylint = "^2.15.10"
 flask-simple-crypt = "^0.3.3"
 cryptography = "^39.0.2"
 safety = "^2.3.5"
+sqlalchemy = "^2.0.7"
 
 
 [tool.poetry.dev-dependencies]

spiffworkflow-backend/src/spiffworkflow_backend/__init__.py

@@ -44,8 +44,9 @@ class MyJSONEncoder(DefaultJSONProvider):
             return obj.serialized
         elif isinstance(obj, sqlalchemy.engine.row.Row):  # type: ignore
             return_dict = {}
-            for row_key in obj.keys():
-                row_value = obj[row_key]
+            row_mapping = obj._mapping
+            for row_key in row_mapping.keys():
+                row_value = row_mapping[row_key]
                 if hasattr(row_value, "serialized"):
                     return_dict.update(row_value.serialized)
                 elif hasattr(row_value, "__dict__"):

spiffworkflow-backend/src/spiffworkflow_backend/models/process_instance.py

@@ -53,6 +53,7 @@ class ProcessInstanceModel(SpiffworkflowBaseDBModel):
     """ProcessInstanceModel."""
 
     __tablename__ = "process_instance"
+    __allow_unmapped__ = True
     id: int = db.Column(db.Integer, primary_key=True)
     process_model_identifier: str = db.Column(db.String(255), nullable=False, index=True)
     process_model_display_name: str = db.Column(db.String(255), nullable=False, index=True)

spiffworkflow-backend/src/spiffworkflow_backend/models/process_instance_report.py

@@ -8,7 +8,6 @@ from typing import Optional
 from typing import TypedDict
 
 from sqlalchemy import ForeignKey
-from sqlalchemy.orm import deferred
 from sqlalchemy.orm import relationship
 
 from spiffworkflow_backend.exceptions.process_entity_not_found_error import (
@@ -69,7 +68,7 @@ class ProcessInstanceReportModel(SpiffworkflowBaseDBModel):
 
     id: int = db.Column(db.Integer, primary_key=True)
     identifier: str = db.Column(db.String(50), nullable=False, index=True)
-    report_metadata: dict = deferred(db.Column(db.JSON))  # type: ignore
+    report_metadata: dict = db.Column(db.JSON)
     created_by_id = db.Column(ForeignKey(UserModel.id), nullable=False, index=True)  # type: ignore
     created_by = relationship("UserModel")
     created_at_in_seconds = db.Column(db.Integer)

spiffworkflow-backend/src/spiffworkflow_backend/models/task.py

@@ -47,6 +47,7 @@ class MultiInstanceType(enum.Enum):
 @dataclass
 class TaskModel(SpiffworkflowBaseDBModel):
     __tablename__ = "task"
+    __allow_unmapped__ = True
     id: int = db.Column(db.Integer, primary_key=True)
     guid: str = db.Column(db.String(36), nullable=False, unique=True)
     bpmn_process_id: int = db.Column(ForeignKey(BpmnProcessModel.id), nullable=False, index=True)  # type: ignore

spiffworkflow-backend/src/spiffworkflow_backend/services/process_instance_report_service.py

@@ -309,11 +309,14 @@ class ProcessInstanceReportService:
     ) -> list[dict]:
         """Add_metadata_columns_to_process_instance."""
         results = []
-        for process_instance in process_instance_sqlalchemy_rows:
-            process_instance_dict = process_instance["ProcessInstanceModel"].serialized
+        for process_instance_row in process_instance_sqlalchemy_rows:
+            process_instance_mapping = process_instance_row._mapping
+            process_instance_dict = process_instance_row[0].serialized
             for metadata_column in metadata_columns:
                 if metadata_column["accessor"] not in process_instance_dict:
-                    process_instance_dict[metadata_column["accessor"]] = process_instance[metadata_column["accessor"]]
+                    process_instance_dict[metadata_column["accessor"]] = process_instance_mapping[
+                        metadata_column["accessor"]
+                    ]
 
             results.append(process_instance_dict)
         return results

spiffworkflow-backend/src/spiffworkflow_backend/services/workflow_execution_service.py

@@ -1,4 +1,3 @@
-import logging
 import time
 from typing import Callable
 from typing import Optional
@@ -280,10 +279,6 @@ class WorkflowExecutionService:
 
         finally:
             self.execution_strategy.save()
-            spiff_logger = logging.getLogger("spiff")
-            for handler in spiff_logger.handlers:
-                if hasattr(handler, "bulk_insert_logs"):
-                    handler.bulk_insert_logs()  # type: ignore
             db.session.commit()
 
             if save: