mirror of
https://github.com/sartography/protocol-builder-mock.git
synced 2025-01-12 16:54:25 +00:00
223 lines
12 KiB
Python
223 lines
12 KiB
Python
from flask_table import Table, Col, LinkCol, BoolCol, DatetimeCol, NestedTableCol
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from flask_wtf import FlaskForm
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from wtforms import SelectMultipleField, StringField, BooleanField, SelectField, validators, HiddenField, DateField, IntegerField
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from wtforms_alchemy import ModelForm
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from wtforms.widgets.html5 import DateInput
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from wtforms.validators import Optional
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from pb.models import RequiredDocument, Investigator, StudyDetails, IRBStatus, IRBInfo, IRBInfoEvent, IRBInfoStatus
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class StudyForm(FlaskForm):
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STUDYID = HiddenField()
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TITLE = StringField('Title', [validators.DataRequired()])
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NETBADGEID = StringField('User UVA Computing Id', [validators.DataRequired()])
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requirements = SelectMultipleField("Documents",
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render_kw={'class': 'multi'},
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choices=[(rd.SS_AUXILIARY_DOC_TYPE_ID, rd.AUXILIARY_DOC) for rd in RequiredDocument.all()])
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Q_COMPLETE = SelectField("IRBStatus",
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choices=[((q.STATUS, q.DETAIL), q.DETAIL) for q in IRBStatus.all()])
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def irb_to_int(x):
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if x == 'None':
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return None
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elif x == '0':
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return 0
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elif x == '1':
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return 1
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class IRBInfoForm(FlaskForm):
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SS_STUDY_ID = HiddenField()
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UVA_STUDY_TRACKING = StringField('UVA_STUDY_TRACKING')
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DATE_MODIFIED = DateField('DATE_MODIFIED', [Optional()], widget=DateInput())
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IRB_ADMINISTRATIVE_REVIEWER = StringField('IRB_ADMINISTRATIVE_REVIEWER')
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AGENDA_DATE = DateField('AGENDA_DATE', [Optional()], widget=DateInput())
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IRB_REVIEW_TYPE = SelectField("IRB_REVIEW_TYPE",
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choices=['None', 'Full Committee', 'Expedited', 'Non-UVA IRB Full Board', 'Non-UVA IRB Expedited'])
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IRBEVENT = SelectField("IRBInfoEvent",
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choices=[((q.EVENT_ID, q.EVENT), q.EVENT) for q in IRBInfoEvent.all()])
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IRB_STATUS = SelectField("IRBInfoStatus",
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choices=[((q.STATUS_ID, q.STATUS), q.STATUS) for q in IRBInfoStatus.all()])
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IRB_OF_RECORD = StringField('IRB_OF_RECORD')
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UVA_IRB_HSR_IS_IRB_OF_RECORD_FOR_ALL_SITES = SelectField('UVA_IRB_HSR_IS_IRB_OF_RECORD_FOR_ALL_SITES',
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choices=['None', '0', '1'],
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coerce=irb_to_int)
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STUDYIRBREVIEWERADMIN = StringField('STUDYIRBREVIEWERADMIN')
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class InvestigatorForm(FlaskForm):
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NETBADGEID = StringField('UVA Id')
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INVESTIGATORTYPE = SelectField("InvestigatorType", choices=[(i.INVESTIGATORTYPE, i.INVESTIGATORTYPEFULL) for i in Investigator.all_types()])
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class StudySponsorForm(FlaskForm):
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STUDY_ID = HiddenField()
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SPONSOR_IDS = SelectMultipleField(
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"Sponsor",
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coerce=int,
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render_kw={'class': 'multi'},
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validators=[validators.DataRequired()]
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)
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class StudyDetailsForm(FlaskForm):
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STUDYID = HiddenField()
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IS_IND = IntegerField(validators=[Optional()], label='IS_IND')
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UVA_STUDY_TRACKING = StringField(label='UVA_STUDY_TRACKING')
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IND_1 = StringField(label='IND_1')
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IND_2 = StringField(label='IND_2')
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IND_3 = StringField(label='IND_3')
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IS_UVA_IND = IntegerField(validators=[Optional()], label='IS_UVA_IND')
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IS_IDE = IntegerField(validators=[Optional()], label='IS_IDE')
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IDE = StringField(label='IDE')
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IS_UVA_IDE = IntegerField(validators=[Optional()], label='IS_UVA_IDE')
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IS_CHART_REVIEW = IntegerField(validators=[Optional()], label='IS_CHART_REVIEW')
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IS_RADIATION = IntegerField(validators=[Optional()], label='IS_RADIATION')
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GCRC_NUMBER = StringField(label='GCRC_NUMBER')
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IS_GCRC = IntegerField(validators=[Optional()], label='IS_GCRC')
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IS_PRC_DSMP = IntegerField(validators=[Optional()], label='IS_PRC_DSMP')
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IS_PRC = IntegerField(validators=[Optional()], label='IS_PRC')
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PRC_NUMBER = StringField(label='PRC_NUMBER')
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IS_IBC = IntegerField(validators=[Optional()], label='IS_IBC')
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IBC_NUMBER = StringField(label='IBC_NUMBER')
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IS_SPONSOR_TRACKING = IntegerField(validators=[Optional()], label='IS_SPONSOR_TRACKING')
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SPONSOR_TRACKING = IntegerField(validators=[Optional()], label='SPONSOR_TRACKING')
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SPONSORS_PROTOCOL_REVISION_DATE = DateField(validators=[Optional()], label='SPONSORS_PROTOCOL_REVISION_DATE')
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IS_SPONSOR_MONITORING = IntegerField(validators=[Optional()], label='IS_SPONSOR_MONITORING')
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IS_DSMB = IntegerField(validators=[Optional()], label='IS_DSMB')
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IS_COMPLETE_NON_IRB_REGULATORY = IntegerField(validators=[Optional()], label='IS_COMPLETE_NON_IRB_REGULATORY')
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IS_AUX = IntegerField(validators=[Optional()], label='IS_AUX')
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IS_SPONSOR = IntegerField(validators=[Optional()], label='IS_SPONSOR')
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IS_GRANT = IntegerField(validators=[Optional()], label='IS_GRANT')
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IS_COMMITTEE_CONFLICT = IntegerField(validators=[Optional()], label='IS_COMMITTEE_CONFLICT')
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DSMB = StringField(label='DSMB')
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DSMB_FREQUENCY = IntegerField(validators=[Optional()], label='DSMB_FREQUENCY')
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IS_DB = IntegerField(validators=[Optional()], label='IS_DB')
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IS_UVA_DB = IntegerField(validators=[Optional()], label='IS_UVA_DB')
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IS_CENTRAL_REG_DB = IntegerField(validators=[Optional()], label='IS_CENTRAL_REG_DB')
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IS_CONSENT_WAIVER = IntegerField(validators=[Optional()], label='IS_CONSENT_WAIVER')
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IS_HGT = IntegerField(validators=[Optional()], label='IS_HGT')
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IS_GENE_TRANSFER = IntegerField(validators=[Optional()], label='IS_GENE_TRANSFER')
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IS_TISSUE_BANKING = IntegerField(validators=[Optional()], label='IS_TISSUE_BANKING')
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IS_SURROGATE_CONSENT = IntegerField(validators=[Optional()], label='IS_SURROGATE_CONSENT')
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IS_ADULT_PARTICIPANT = IntegerField(validators=[Optional()], label='IS_ADULT_PARTICIPANT')
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IS_MINOR_PARTICIPANT = IntegerField(validators=[Optional()], label='IS_MINOR_PARTICIPANT')
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IS_MINOR = IntegerField(validators=[Optional()], label='IS_MINOR')
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IS_BIOMEDICAL = IntegerField(validators=[Optional()], label='IS_BIOMEDICAL')
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IS_QUALITATIVE = IntegerField(validators=[Optional()], label='IS_QUALITATIVE')
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IS_PI_SCHOOL = IntegerField(validators=[Optional()], label='IS_PI_SCHOOL')
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IS_PRISONERS_POP = IntegerField(validators=[Optional()], label='IS_PRISONERS_POP')
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IS_PREGNANT_POP = IntegerField(validators=[Optional()], label='IS_PREGNANT_POP')
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IS_FETUS_POP = IntegerField(validators=[Optional()], label='IS_FETUS_POP')
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IS_MENTAL_IMPAIRMENT_POP = IntegerField(validators=[Optional()], label='IS_MENTAL_IMPAIRMENT_POP')
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IS_ELDERLY_POP = IntegerField(validators=[Optional()], label='IS_ELDERLY_POP')
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IS_OTHER_VULNERABLE_POP = IntegerField(validators=[Optional()], label='IS_OTHER_VULNERABLE_POP')
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OTHER_VULNERABLE_DESC = StringField(label='OTHER_VULNERABLE_DESC')
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IS_MULTI_SITE = IntegerField(validators=[Optional()], label='IS_MULTI_SITE')
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IS_UVA_LOCATION = IntegerField(validators=[Optional()], label='IS_UVA_LOCATION')
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NON_UVA_LOCATION = StringField(label='NON_UVA_LOCATION')
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MULTI_SITE_LOCATIONS = StringField(label='MULTI_SITE_LOCATIONS')
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IS_OUTSIDE_CONTRACT = IntegerField(validators=[Optional()], label='IS_OUTSIDE_CONTRACT')
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IS_UVA_PI_MULTI = IntegerField(validators=[Optional()], label='IS_UVA_PI_MULTI')
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IS_NOT_PRC_WAIVER = IntegerField(validators=[Optional()], label='IS_NOT_PRC_WAIVER')
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IS_INSIDE_CONTRACT = IntegerField(validators=[Optional()], label='IS_INSIDE_CONTRACT')
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IS_CANCER_PATIENT = IntegerField(validators=[Optional()], label='IS_CANCER_PATIENT')
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UPLOAD_COMPLETE = IntegerField(validators=[Optional()], label='UPLOAD_COMPLETE')
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IS_FUNDING_SOURCE = IntegerField(validators=[Optional()], label='IS_FUNDING_SOURCE')
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IS_CODED_RESEARCH = IntegerField(validators=[Optional()], label='IS_CODED_RESEARCH')
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IS_OUTSIDE_SPONSOR = IntegerField(validators=[Optional()], label='IS_OUTSIDE_SPONSOR')
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IS_PI_INITIATED = IntegerField(validators=[Optional()], label='IS_PI_INITIATED')
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IS_ENGAGED_RESEARCH = IntegerField(validators=[Optional()], label='IS_ENGAGED_RESEARCH')
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IS_APPROVED_DEVICE = IntegerField(validators=[Optional()], label='IS_APPROVED_DEVICE')
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IS_FINANCIAL_CONFLICT = IntegerField(validators=[Optional()], label='IS_FINANCIAL_CONFLICT')
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IS_NOT_CONSENT_WAIVER = IntegerField(validators=[Optional()], label='IS_NOT_CONSENT_WAIVER')
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IS_FOR_CANCER_CENTER = IntegerField(validators=[Optional()], label='IS_FOR_CANCER_CENTER')
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IS_REVIEW_BY_CENTRAL_IRB = IntegerField(validators=[Optional()], label='IS_REVIEW_BY_CENTRAL_IRB')
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IRBREVIEWERADMIN = StringField(label='IRBREVIEWERADMIN')
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IS_UVA_COLLABANALYSIS = IntegerField(validators=[Optional()], label='IS_UVA_COLLABANALYSIS')
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REVIEW_TYPE = SelectField("REVIEW_TYPE/REVIEWTYPENAME",
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choices=[('1', ('1 None')),
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('2', ('2 Full Committee')),
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('3', ('3 Expedited')),
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('21', ('21 Review by Non-UVA IRB'))])
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class ConfirmDeleteForm(FlaskForm):
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confirm = BooleanField('Yes, really delete', default='checked',
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false_values=(False, 'false', 0, '0'))
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class RequirementsTable(Table):
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SS_AUXILIARY_DOC_TYPE_ID = Col('Code')
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AUXILIARY_DOC = Col('Name')
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class InvestigatorsTable(Table):
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NETBADGEID = Col('UVA Id')
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INVESTIGATORTYPE = Col('Type')
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delete = LinkCol(
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'delete', 'del_investigator', url_kwargs=dict(inv_id='id'),
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anchor_attrs={'class': 'btn btn-icon btn-warn', 'title': 'Delete Investigator'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Delete Investigator'}
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)
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class SponsorCol(Col):
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def td_format(self, content):
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return f'{content.SP_NAME} ({content.SP_TYPE})'
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class SponsorsTable(Table):
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sponsor = SponsorCol('Sponsor')
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delete = LinkCol(
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'delete', 'del_study_sponsor', url_kwargs=dict(study_sponsor_id='id'),
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anchor_attrs={'class': 'btn btn-icon btn-warn', 'title': 'Delete Sponsor'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Delete Sponsor'}
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)
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class StudyTable(Table):
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def sort_url(self, col_id, reverse=False):
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pass
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edit = LinkCol(
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'edit', 'edit_study', url_kwargs=dict(study_id='STUDYID'),
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anchor_attrs={'class': 'btn btn-icon btn-primary', 'title': 'Edit Study'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Edit Study'}
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)
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details = LinkCol(
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'ballot', 'study_details', url_kwargs=dict(study_id='STUDYID'),
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anchor_attrs={'class': 'btn btn-icon btn-default', 'title': 'Edit Questions'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Edit Questions'}
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)
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add_inv = LinkCol(
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'person_add', 'new_investigator', url_kwargs=dict(study_id='STUDYID'),
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anchor_attrs={'class': 'btn btn-icon btn-accent', 'title': 'Add Investigator'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Add Investigator'}
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)
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add_sponsor = LinkCol(
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'account_balance', 'edit_study_sponsor', url_kwargs=dict(study_id='STUDYID'),
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anchor_attrs={'class': 'btn btn-icon btn-accent', 'title': 'Edit Sponsor(s)'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Edit Sponsor(s)'}
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)
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irb_info = LinkCol(
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'info', 'edit_irb_info', url_kwargs=dict(study_id='STUDYID'),
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anchor_attrs={'class': 'btn btn-icon btn-accent', 'title': 'Edit Info'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Edit Info'}
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)
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STUDYID = Col('Study Id')
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TITLE = Col('Title')
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NETBADGEID = Col('User')
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DATE_MODIFIED = DatetimeCol('Last Update', "medium")
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Q_COMPLETE = BoolCol('Complete?')
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requirements = NestedTableCol('Documents', RequirementsTable)
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investigators = NestedTableCol('Investigators', InvestigatorsTable)
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sponsors = NestedTableCol('Sponsors', SponsorsTable)
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delete = LinkCol(
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'delete', 'del_study', url_kwargs=dict(study_id='STUDYID'),
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anchor_attrs={'class': 'btn btn-icon btn-warn', 'title': 'Delete Study'},
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th_html_attrs={'class': 'mat-icon text-center', 'title': 'Delete Study'}
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)
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